Available Tools

ToolUniverse provides over 600 scientific tools organized into local and remote categories. This overview helps you discover and navigate the available tools for your research needs.

Tool Registry

Local Tools

Local tools are Python classes that run within the ToolUniverse process, providing high performance and seamless integration.

Key Features: - High performance with no network overhead - Automatic discovery and registration - Full access to ToolUniverse features - Easy development and testing

Remote Tools

Remote tools integrate external services, APIs, and specialized systems running on different servers.

Key Features: - Integration with external APIs and services - Scalable computation offloading - Support for different programming languages - Secure isolation of sensitive operations

Tip

Discover Available Tools:

• Tool Listing Tutorial - Browse tools by category and explore the full catalog

• Tool Finder Tutorial - Learn advanced search techniques and filters

• Remote Tools Setup - Set up remote tool integrations

• Tool Loading Tutorial - Load and configure local tools

Overview

• Total Configuration Files: 191

• Total Tools: 1250

Local Tools

Note

Tools running within the ToolUniverse process

Packages Tools

• Bioinformatics Core Tools

• Cheminformatics Tools

• Earth Sciences Tools

• Genomics Tools

• Image Processing Tools

• Machine Learning Tools

• Neuroscience Tools

• Physics Astronomy Tools

• Scientific Computing Tools

• Single Cell Tools

• Structural Biology Tools

• Visualization Tools

Builtin Tools

• Admetai Tools

• Adverse Event Tools

• Agentic Tools

• Alphafold Tools

• Alphamissense Tools

• Arrayexpress Tools

• Arxiv Tools

• Bigg Models Tools

• Bindingdb Tools

• Biomodels Tools

• Biorxiv Tools

• Biostudies Tools

• Biothings Tools

• Blast Tools

• Boltz Mcp Loader Tools

• Brenda Tools

• Cadd Tools

• Cbioportal Tools

• Cdc Tools

• Cellosaurus Tools

• Cellxgene Census Tools

• Chembl Tools

• Chipatlas Tools

• Civic Tools

• Clingen Tools

• Clinical Trials Tools

• Clinicaltrials Gov Tools

• Clinvar Tools

• Compact Mode Tools

• Compose Tools

• Core Tools

• Cosmic Tools

• Crossref Tools

• Dailymed Tools

• Dataset Tools

• Dbfetch Tools

• Dblp Tools

• Dbpedia Tools

• Dbsnp Tools

• Deepgo Tools

• Depmap Tools

• Dgidb Tools

• Disease Target Score Tools

• Disgenet Tools

• Doaj Tools

• Drug Discovery Agents

• Ebi Search Tools

• Efo Tools

• Embedding Tools

• Emdb Tools

• Emolecules Tools

• Ena Browser Tools

• Enamine Tools

• Encode Tools

• Enrichr Tools

• Ensembl Tools

• Euhealth Tools

• Europe Pmc Tools

• Eve Tools

• Expert Feedback Tools

• Fatcat Tools

• Fda Drug Adverse Event Detail Tools

• Fda Drug Adverse Event Tools

• Fda Drug Labeling Tools

• Fda Pharmacogenomic Biomarkers Tools

• File Download Tools

• Finder Tools

• Fourdn Tools

• Gbif Tools

• Gdc Tools

• Gene Ontology Tools

• Geo Tools

• Gnomad Tools

• Gpcrdb Tools

• Gtex Tools

• Gtex V2 Tools

• Gtopdb Tools

• Gwas Tools

• Hal Tools

• Hca Tools

• Health Disparities Tools

• Hmdb Tools

• Hpa Tools

• Humanbase Tools

• Idmap Tools

• Iedb Tools

• Imgt Tools

• Intact Tools

• Interpro Tools

• Interproscan Tools

• Jaspar Tools

• Kegg Tools

• Literature Search Tools

• Markitdown Tools

• Mcp Client Tools Example

• Medlineplus Tools

• Medrxiv Tools

• Metabolights Tools

• Metabolomics Workbench Tools

• Metacyc Tools

• Mgnify Tools

• Molecule 2D Tools

• Molecule 3D Tools

• Monarch Tools

• Mpd Tools

• Ncbi Nucleotide Tools

• Nhanes Tools

• Nvidia Nim Tools

• Obis Tools

• Odphp Tools

• Ols Tools

• Omim Tools

• Oncokb Tools

• Openaire Tools

• Openalex Tools

• Opentarget Tools

• Optimizer Tools

• Orphanet Tools

• Osf Preprints Tools

• Output Summarization Tools

• Package Discovery Tools

• Paleobiology Tools

• Pathway Commons Tools

• Pdbe Api Tools

• Pharmgkb Tools

• Pharos Tools

• Pmc Tools

• Ppi Tools

• Pride Tools

• Protein Structure 3D Tools

• Proteins Api Tools

• Pubchem Tools

• Pubmed Tools

• Pubtator Tools

• Pypi Package Inspector Tools

• Python Executor Tools

• Rcsb Pdb Tools

• Rcsb Search Tools

• Reactome Tools

• Regulomedb Tools

• Remap Tools

• Rfam Tools

• Rnacentral Tools

• Rxnorm Tools

• Sabdab Tools

• Screen Tools

• Semantic Scholar Tools

• Simbad Tools

• Smolagent Tools

• Special Tools

• Spliceai Tools

• Stitch Tools

• Therasabdab Tools

• Tool Composition Tools

• Tool Discovery Agents

• Txagent Client Tools

• Umls Tools

• Unified Guideline Tools

• Uniprot Tools

• Unpaywall Tools

• Url Fetch Tools

• Uspto Downloader Tools

• Uspto Tools

• Web Search Tools

• Who Gho Tools

• Wikidata Sparql Tools

• Wikipathways Tools

• Wikipedia Tools

• Worms Tools

• Xml Tools

• Zenodo Tools

• Zinc Tools

Remote Tools

Note

Tools registered in with remote registry

---

• Boltz Tools
• Depmap Tools
• Expert Feedback Tools
• Immune Compass Tools
• Pinnacle Tools
• Transcriptformer Tools
• Uspto Downloader Tools

Tools by Type

ADMETAITool (9 tools)

Local Tools:

• ADMETAI_predict_BBB_penetrance (from Admetai Tools)

• ADMETAI_predict_CYP_interactions (from Admetai Tools)

• ADMETAI_predict_bioavailability (from Admetai Tools)

• ADMETAI_predict_clearance_distribution (from Admetai Tools)

• ADMETAI_predict_nuclear_receptor_activity (from Admetai Tools)

• ADMETAI_predict_physicochemical_properties (from Admetai Tools)

• ADMETAI_predict_solubility_lipophilicity_hydration (from Admetai Tools)

• ADMETAI_predict_stress_response (from Admetai Tools)

• ADMETAI_predict_toxicity (from Admetai Tools)

AgenticTool (52 tools)

Local Tools:

• ADMETAnalyzerAgent (from Drug Discovery Agents)

• AdvancedCodeQualityAnalyzer (from Agentic Tools)

• AdverseEventICDMapper (from Adverse Event Tools)

• AdverseEventPredictionQuestionGenerator (from Adverse Event Tools)

• AdverseEventPredictionQuestionGeneratorWithContext (from Adverse Event Tools)

• ArgumentDescriptionOptimizer (from Optimizer Tools)

• ClinicalTrialDesignAgent (from Drug Discovery Agents)

• CodeQualityAnalyzer (from Tool Discovery Agents)

• CompoundDiscoveryAgent (from Drug Discovery Agents)

• DataAnalysisValidityReviewer (from Agentic Tools)

• DescriptionAnalyzer (from Optimizer Tools)

• DescriptionAnalyzer (from Agentic Tools)

• DescriptionQualityEvaluator (from Optimizer Tools)

• DescriptionQualityEvaluator (from Agentic Tools)

• DiseaseAnalyzerAgent (from Drug Discovery Agents)

• DomainExpertValidator (from Agentic Tools)

• DrugInteractionAnalyzerAgent (from Drug Discovery Agents)

• DrugOptimizationAgent (from Drug Discovery Agents)

• EthicalComplianceReviewer (from Agentic Tools)

• ExperimentalDesignScorer (from Agentic Tools)

• HypothesisGenerator (from Agentic Tools)

• IntentAnalyzerAgent (from Literature Search Tools)

• KeywordExtractorAgent (from Literature Search Tools)

• LabelGenerator (from Agentic Tools)

• LiteratureContextReviewer (from Agentic Tools)

• LiteratureSynthesisAgent (from Drug Discovery Agents)

• MedicalLiteratureReviewer (from Agentic Tools)

• MedicalTermNormalizer (from Agentic Tools)

• MethodologyRigorReviewer (from Agentic Tools)

• NoveltySignificanceReviewer (from Agentic Tools)

• OverallSummaryAgent (from Literature Search Tools)

• PackageAnalyzer (from Tool Discovery Agents)

• ProtocolOptimizer (from Agentic Tools)

• QualityCheckerAgent (from Literature Search Tools)

• QuestionRephraser (from Agentic Tools)

• ReferenceInfoAnalyzer (from Tool Discovery Agents)

• ReproducibilityTransparencyReviewer (from Agentic Tools)

• ResultSummarizerAgent (from Literature Search Tools)

• ResultsInterpretationReviewer (from Agentic Tools)

• ScientificTextSummarizer (from Agentic Tools)

• TestCaseGenerator (from Optimizer Tools)

• TestResultsAnalyzer (from Tool Discovery Agents)

• ToolCompatibilityAnalyzer (from Tool Composition Tools)

• ToolMetadataGenerator (from Agentic Tools)

• ToolMetadataStandardizer (from Agentic Tools)

• ToolOutputSummarizer (from Output Summarization Tools)

• ToolQualityEvaluator (from Agentic Tools)

• ToolRelationshipDetector (from Agentic Tools)

• UnifiedToolGenerator (from Tool Discovery Agents)

• WritingPresentationReviewer (from Agentic Tools)

• XMLToolOptimizer (from Tool Discovery Agents)

• call_agentic_human (from Agentic Tools)

AlphaFoldRESTTool (3 tools)

Local Tools:

• alphafold_get_annotations (from Alphafold Tools)

• alphafold_get_prediction (from Alphafold Tools)

• alphafold_get_summary (from Alphafold Tools)

AlphaMissenseTool (2 tools)

Local Tools:

• AlphaMissense_get_residue_scores (from Alphamissense Tools)

• AlphaMissense_get_variant_score (from Alphamissense Tools)

ArXivTool (1 tools)

Local Tools:

• ArXiv_search_papers (from Arxiv Tools)

ArrayExpressRESTTool (4 tools)

Local Tools:

• arrayexpress_get_experiment (from Arrayexpress Tools)

• arrayexpress_get_experiment_files (from Arrayexpress Tools)

• arrayexpress_get_experiment_samples (from Arrayexpress Tools)

• arrayexpress_search_experiments (from Arrayexpress Tools)

BRENDATool (4 tools)

Local Tools:

• BRENDA_get_enzyme_info (from Brenda Tools)

• BRENDA_get_inhibitors (from Brenda Tools)

• BRENDA_get_kcat (from Brenda Tools)

• BRENDA_get_km (from Brenda Tools)

BiGGModelsTool (7 tools)

Local Tools:

• BiGG_get_database_version (from Bigg Models Tools)

• BiGG_get_metabolite (from Bigg Models Tools)

• BiGG_get_model (from Bigg Models Tools)

• BiGG_get_model_reactions (from Bigg Models Tools)

• BiGG_get_reaction (from Bigg Models Tools)

• BiGG_list_models (from Bigg Models Tools)

• BiGG_search (from Bigg Models Tools)

BinaryDownloadTool (1 tools)

Local Tools:

• download_binary_file (from File Download Tools)

BindingDBTool (4 tools)

Local Tools:

• BindingDB_get_ligands_by_pdb (from Bindingdb Tools)

• BindingDB_get_ligands_by_uniprot (from Bindingdb Tools)

• BindingDB_get_ligands_by_uniprots (from Bindingdb Tools)

• BindingDB_get_targets_by_compound (from Bindingdb Tools)

BioGRIDRESTTool (1 tools)

Local Tools:

• BioGRID_get_interactions (from Ppi Tools)

BioModelsRESTTool (5 tools)

Local Tools:

• BioModels_download_model (from Biomodels Tools)

• BioModels_get_model (from Biomodels Tools)

• BioModels_list_files (from Biomodels Tools)

• BioModels_search_parameters (from Biomodels Tools)

• biomodels_search (from Biomodels Tools)

BioRxivTool (1 tools)

Local Tools:

• BioRxiv_search_preprints (from Biorxiv Tools)

BioStudiesRESTTool (4 tools)

Local Tools:

• biostudies_get_study (from Biostudies Tools)

• biostudies_get_study_files (from Biostudies Tools)

• biostudies_search (from Biostudies Tools)

• biostudies_search_by_collection (from Biostudies Tools)

CADDTool (3 tools)

Local Tools:

• CADD_get_position_scores (from Cadd Tools)

• CADD_get_range_scores (from Cadd Tools)

• CADD_get_variant_score (from Cadd Tools)

CBioPortalRESTTool (13 tools)

Local Tools:

• cBioPortal_get_cancer_studies (from Cbioportal Tools)

• cBioPortal_get_cancer_types (from Cbioportal Tools)

• cBioPortal_get_clinical_attributes (from Cbioportal Tools)

• cBioPortal_get_clinical_data (from Cbioportal Tools)

• cBioPortal_get_gene_info (from Cbioportal Tools)

• cBioPortal_get_gene_panel_genes (from Cbioportal Tools)

• cBioPortal_get_gene_panels (from Cbioportal Tools)

• cBioPortal_get_genes (from Cbioportal Tools)

• cBioPortal_get_molecular_profiles (from Cbioportal Tools)

• cBioPortal_get_mutations (from Cbioportal Tools)

• cBioPortal_get_patients (from Cbioportal Tools)

• cBioPortal_get_sample_lists (from Cbioportal Tools)

• cBioPortal_get_samples (from Cbioportal Tools)

CDCRESTTool (2 tools)

Local Tools:

• cdc_data_get_dataset (from Cdc Tools)

• cdc_data_search_datasets (from Cdc Tools)

CELLxGENECensusTool (7 tools)

Local Tools:

• CELLxGENE_download_h5ad (from Cellxgene Census Tools)

• CELLxGENE_get_cell_metadata (from Cellxgene Census Tools)

• CELLxGENE_get_census_versions (from Cellxgene Census Tools)

• CELLxGENE_get_embeddings (from Cellxgene Census Tools)

• CELLxGENE_get_expression_data (from Cellxgene Census Tools)

• CELLxGENE_get_gene_metadata (from Cellxgene Census Tools)

• CELLxGENE_get_presence_matrix (from Cellxgene Census Tools)

CIViCTool (12 tools)

Local Tools:

• civic_get_assertion (from Civic Tools)

• civic_get_evidence_item (from Civic Tools)

• civic_get_molecular_profile (from Civic Tools)

• civic_get_variant (from Civic Tools)

• civic_get_variants_by_gene (from Civic Tools)

• civic_search_assertions (from Civic Tools)

• civic_search_diseases (from Civic Tools)

• civic_search_evidence_items (from Civic Tools)

• civic_search_genes (from Civic Tools)

• civic_search_molecular_profiles (from Civic Tools)

• civic_search_therapies (from Civic Tools)

• civic_search_variants (from Civic Tools)

CMAGuidelinesTool (1 tools)

Local Tools:

• CMA_Guidelines_Search (from Unified Guideline Tools)

COSMICTool (2 tools)

Local Tools:

• COSMIC_get_mutations_by_gene (from Cosmic Tools)

• COSMIC_search_mutations (from Cosmic Tools)

CellosaurusGetCellLineInfoTool (1 tools)

Local Tools:

• cellosaurus_get_cell_line_info (from Cellosaurus Tools)

CellosaurusQueryConverterTool (1 tools)

Local Tools:

• cellosaurus_query_converter (from Cellosaurus Tools)

CellosaurusSearchTool (1 tools)

Local Tools:

• cellosaurus_search_cell_lines (from Cellosaurus Tools)

ChEMBLRESTTool (28 tools)

Local Tools:

• ChEMBL_get_activity (from Chembl Tools)

• ChEMBL_get_assay (from Chembl Tools)

• ChEMBL_get_assay_activities (from Chembl Tools)

• ChEMBL_get_compound_record (from Chembl Tools)

• ChEMBL_get_compound_record_activities (from Chembl Tools)

• ChEMBL_get_drug (from Chembl Tools)

• ChEMBL_get_drug_mechanisms (from Chembl Tools)

• ChEMBL_get_molecule (from Chembl Tools)

• ChEMBL_get_molecule_image (from Chembl Tools)

• ChEMBL_get_molecule_targets (from Chembl Tools)

• ChEMBL_get_target (from Chembl Tools)

• ChEMBL_get_target_activities (from Chembl Tools)

• ChEMBL_get_target_assays (from Chembl Tools)

• ChEMBL_search_activities (from Chembl Tools)

• ChEMBL_search_assays (from Chembl Tools)

• ChEMBL_search_atc_classification (from Chembl Tools)

• ChEMBL_search_binding_sites (from Chembl Tools)

• ChEMBL_search_cell_lines (from Chembl Tools)

• ChEMBL_search_compound_structural_alerts (from Chembl Tools)

• ChEMBL_search_documents (from Chembl Tools)

• ChEMBL_search_drugs (from Chembl Tools)

• ChEMBL_search_mechanisms (from Chembl Tools)

• ChEMBL_search_molecules (from Chembl Tools)

• ChEMBL_search_protein_classification (from Chembl Tools)

• ChEMBL_search_similarity (from Chembl Tools)

• ChEMBL_search_substructure (from Chembl Tools)

• ChEMBL_search_targets (from Chembl Tools)

• ChEMBL_search_tissue (from Chembl Tools)

ChEMBLTool (1 tools)

Local Tools:

• ChEMBL_search_similar_molecules (from Chembl Tools)

ChIPAtlasTool (4 tools)

Local Tools:

• ChIPAtlas_enrichment_analysis (from Chipatlas Tools)

• ChIPAtlas_get_experiments (from Chipatlas Tools)

• ChIPAtlas_get_peak_data (from Chipatlas Tools)

• ChIPAtlas_search_datasets (from Chipatlas Tools)

ClinGenTool (8 tools)

Local Tools:

• ClinGen_get_actionability_adult (from Clingen Tools)

• ClinGen_get_actionability_pediatric (from Clingen Tools)

• ClinGen_get_dosage_sensitivity (from Clingen Tools)

• ClinGen_get_gene_validity (from Clingen Tools)

• ClinGen_get_variant_classifications (from Clingen Tools)

• ClinGen_search_actionability (from Clingen Tools)

• ClinGen_search_dosage_sensitivity (from Clingen Tools)

• ClinGen_search_gene_validity (from Clingen Tools)

ClinVarGetClinicalSignificance (1 tools)

Local Tools:

• clinvar_get_clinical_significance (from Clinvar Tools)

ClinVarGetVariantDetails (1 tools)

Local Tools:

• clinvar_get_variant_details (from Clinvar Tools)

ClinVarSearchVariants (1 tools)

Local Tools:

• clinvar_search_variants (from Clinvar Tools)

ClinicalTrialsDetailsTool (9 tools)

Local Tools:

• extract_clinical_trial_adverse_events (from Clinicaltrials Gov Tools)

• extract_clinical_trial_outcomes (from Clinicaltrials Gov Tools)

• get_clinical_trial_conditions_and_interventions (from Clinicaltrials Gov Tools)

• get_clinical_trial_descriptions (from Clinicaltrials Gov Tools)

• get_clinical_trial_eligibility_criteria (from Clinicaltrials Gov Tools)

• get_clinical_trial_locations (from Clinicaltrials Gov Tools)

• get_clinical_trial_outcome_measures (from Clinicaltrials Gov Tools)

• get_clinical_trial_references (from Clinicaltrials Gov Tools)

• get_clinical_trial_status_and_dates (from Clinicaltrials Gov Tools)

ClinicalTrialsGovTool (2 tools)

Local Tools:

• clinical_trials_get_details (from Clinical Trials Tools)

• clinical_trials_search (from Clinical Trials Tools)

ClinicalTrialsSearchTool (1 tools)

Local Tools:

• search_clinical_trials (from Clinicaltrials Gov Tools)

ComposeTool (11 tools)

Local Tools:

• BiomarkerDiscoveryWorkflow (from Compose Tools)

• ComprehensiveDrugDiscoveryPipeline (from Compose Tools)

• DrugSafetyAnalyzer (from Compose Tools)

• LiteratureSearchTool (from Compose Tools)

• MultiAgentLiteratureSearch (from Literature Search Tools)

• OutputSummarizationComposer (from Output Summarization Tools)

• ToolDescriptionOptimizer (from Optimizer Tools)

• ToolDiscover (from Tool Discovery Agents)

• ToolGraphComposer (from Tool Composition Tools)

• ToolGraphGenerationPipeline (from Compose Tools)

• ToolMetadataGenerationPipeline (from Compose Tools)

CoreTool (1 tools)

Local Tools:

• CORE_search_papers (from Core Tools)

CrossrefRESTTool (6 tools)

Local Tools:

• Crossref_get_funder (from Crossref Tools)

• Crossref_get_journal (from Crossref Tools)

• Crossref_get_work (from Crossref Tools)

• Crossref_list_funders (from Crossref Tools)

• Crossref_list_types (from Crossref Tools)

• Crossref_search_works (from Crossref Tools)

DBLPTool (1 tools)

Local Tools:

• DBLP_search_publications (from Dblp Tools)

DBpediaSPARQLTool (1 tools)

Local Tools:

• DBpedia_SPARQL_query (from Dbpedia Tools)

DGIdbTool (4 tools)

Local Tools:

• DGIdb_get_drug_gene_interactions (from Dgidb Tools)

• DGIdb_get_drug_info (from Dgidb Tools)

• DGIdb_get_gene_druggability (from Dgidb Tools)

• DGIdb_get_gene_info (from Dgidb Tools)

DOAJTool (1 tools)

Local Tools:

• DOAJ_search_articles (from Doaj Tools)

DatasetTool (7 tools)

Local Tools:

• dict_search (from Dataset Tools)

• dili_search (from Dataset Tools)

• diqt_search (from Dataset Tools)

• drugbank_full_search (from Dataset Tools)

• drugbank_links_search (from Dataset Tools)

• drugbank_vocab_filter (from Dataset Tools)

• drugbank_vocab_search (from Dataset Tools)

DbfetchRESTTool (4 tools)

Local Tools:

• dbfetch_fetch_batch (from Dbfetch Tools)

• dbfetch_fetch_entry (from Dbfetch Tools)

• dbfetch_list_databases (from Dbfetch Tools)

• dbfetch_list_formats (from Dbfetch Tools)

DeepGOTool (1 tools)

Local Tools:

• DeepGO_predict_function (from Deepgo Tools)

DepMapTool (4 tools)

Local Tools:

• DepMap_get_cell_line (from Depmap Tools)

• DepMap_get_cell_lines (from Depmap Tools)

• DepMap_get_gene_dependencies (from Depmap Tools)

• DepMap_search_cell_lines (from Depmap Tools)

DisGeNETTool (5 tools)

Local Tools:

• DisGeNET_get_disease_genes (from Disgenet Tools)

• DisGeNET_get_gda (from Disgenet Tools)

• DisGeNET_get_vda (from Disgenet Tools)

• DisGeNET_search_disease (from Disgenet Tools)

• DisGeNET_search_gene (from Disgenet Tools)

DiseaseTargetScoreTool (10 tools)

Local Tools:

• cancer_biomarkers_disease_target_score (from Disease Target Score Tools)

• cancer_gene_census_disease_target_score (from Disease Target Score Tools)

• chembl_disease_target_score (from Disease Target Score Tools)

• disease_target_score (from Disease Target Score Tools)

• europepmc_disease_target_score (from Disease Target Score Tools)

• eva_disease_target_score (from Disease Target Score Tools)

• eva_somatic_disease_target_score (from Disease Target Score Tools)

• expression_atlas_disease_target_score (from Disease Target Score Tools)

• genomics_england_disease_target_score (from Disease Target Score Tools)

• reactome_disease_target_score (from Disease Target Score Tools)

DynamicPackageDiscovery (1 tools)

Local Tools:

• dynamic_package_discovery (from Package Discovery Tools)

EBISearchRESTTool (7 tools)

Local Tools:

• ebi_cross_reference_search (from Ebi Search Tools)

• ebi_get_domain_fields (from Ebi Search Tools)

• ebi_get_domain_info (from Ebi Search Tools)

• ebi_get_entry (from Ebi Search Tools)

• ebi_list_domains (from Ebi Search Tools)

• ebi_search_domain (from Ebi Search Tools)

• ebi_search_with_facets (from Ebi Search Tools)

EFOTool (1 tools)

Local Tools:

• OSL_get_efo_id_by_disease_name (from Efo Tools)

EMDBRESTTool (7 tools)

Local Tools:

• EMDB_get_imaging_info (from Emdb Tools)

• EMDB_get_map_info (from Emdb Tools)

• EMDB_get_publications (from Emdb Tools)

• EMDB_get_sample_info (from Emdb Tools)

• EMDB_get_structure (from Emdb Tools)

• EMDB_get_validation (from Emdb Tools)

• EMDB_search_structures (from Emdb Tools)

EMoleculesTool (4 tools)

Local Tools:

• eMolecules_get_compound (from Emolecules Tools)

• eMolecules_get_vendors (from Emolecules Tools)

• eMolecules_search (from Emolecules Tools)

• eMolecules_search_smiles (from Emolecules Tools)

ENABrowserRESTTool (6 tools)

Local Tools:

• ena_get_entry (from Ena Browser Tools)

• ena_get_entry_history (from Ena Browser Tools)

• ena_get_entry_summary (from Ena Browser Tools)

• ena_get_sequence_embl (from Ena Browser Tools)

• ena_get_sequence_fasta (from Ena Browser Tools)

• ena_get_sequence_xml (from Ena Browser Tools)

ENCODEFilesTool (1 tools)

Local Tools:

• ENCODE_list_files (from Encode Tools)

ENCODERESTTool (3 tools)

Local Tools:

• ENCODE_get_biosample (from Encode Tools)

• ENCODE_get_experiment (from Encode Tools)

• ENCODE_get_file (from Encode Tools)

ENCODESearchBiosamplesTool (1 tools)

Local Tools:

• ENCODE_search_biosamples (from Encode Tools)

ENCODESearchTool (1 tools)

Local Tools:

• ENCODE_search_experiments (from Encode Tools)

EVETool (2 tools)

Local Tools:

• EVE_get_gene_info (from Eve Tools)

• EVE_get_variant_score (from Eve Tools)

EmbeddingDatabase (3 tools)

Local Tools:

• embedding_database_add (from Embedding Tools)

• embedding_database_create (from Embedding Tools)

• embedding_database_search (from Embedding Tools)

EmbeddingSync (2 tools)

Local Tools:

• embedding_sync_download (from Embedding Tools)

• embedding_sync_upload (from Embedding Tools)

EnamineTool (4 tools)

Local Tools:

• Enamine_get_compound (from Enamine Tools)

• Enamine_get_libraries (from Enamine Tools)

• Enamine_search_catalog (from Enamine Tools)

• Enamine_search_smiles (from Enamine Tools)

EnrichrTool (1 tools)

Local Tools:

• enrichr_gene_enrichment_analysis (from Enrichr Tools)

EnsemblRESTTool (19 tools)

Local Tools:

• ensembl_get_alignment (from Ensembl Tools)

• ensembl_get_archive (from Ensembl Tools)

• ensembl_get_genetree (from Ensembl Tools)

• ensembl_get_homology (from Ensembl Tools)

• ensembl_get_ontology_ancestors (from Ensembl Tools)

• ensembl_get_ontology_descendants (from Ensembl Tools)

• ensembl_get_ontology_term (from Ensembl Tools)

• ensembl_get_overlap_features (from Ensembl Tools)

• ensembl_get_regulatory_features (from Ensembl Tools)

• ensembl_get_sequence (from Ensembl Tools)

• ensembl_get_species (from Ensembl Tools)

• ensembl_get_taxonomy (from Ensembl Tools)

• ensembl_get_variants (from Ensembl Tools)

• ensembl_get_variation (from Ensembl Tools)

• ensembl_get_variation_phenotypes (from Ensembl Tools)

• ensembl_get_xrefs (from Ensembl Tools)

• ensembl_get_xrefs_by_name (from Ensembl Tools)

• ensembl_lookup_gene (from Ensembl Tools)

• ensembl_vep_region (from Ensembl Tools)

EuHealthDeepDiveTool (1 tools)

Local Tools:

• euhealthinfo_deepdive (from Euhealth Tools)

EuHealthTopicSearchTool (20 tools)

Local Tools:

• euhealthinfo_search_alcohol_tobacco_psychoactive_use (from Euhealth Tools)

• euhealthinfo_search_births (from Euhealth Tools)

• euhealthinfo_search_cancer (from Euhealth Tools)

• euhealthinfo_search_cancer_registry (from Euhealth Tools)

• euhealthinfo_search_causes_of_death (from Euhealth Tools)

• euhealthinfo_search_covid_19 (from Euhealth Tools)

• euhealthinfo_search_deaths (from Euhealth Tools)

• euhealthinfo_search_diabetes_epidemiology_registry (from Euhealth Tools)

• euhealthinfo_search_disability (from Euhealth Tools)

• euhealthinfo_search_healthcare_expenditure (from Euhealth Tools)

• euhealthinfo_search_hospital_in_patient_data (from Euhealth Tools)

• euhealthinfo_search_infectious_diseases (from Euhealth Tools)

• euhealthinfo_search_key_indicators_registries_surveys (from Euhealth Tools)

• euhealthinfo_search_mental_health (from Euhealth Tools)

• euhealthinfo_search_obesity (from Euhealth Tools)

• euhealthinfo_search_population_health_survey (from Euhealth Tools)

• euhealthinfo_search_primary_care_workforce (from Euhealth Tools)

• euhealthinfo_search_surveillance (from Euhealth Tools)

• euhealthinfo_search_surveillance_mortality_rates (from Euhealth Tools)

• euhealthinfo_search_vaccination (from Euhealth Tools)

EuropePMCGuidelinesTool (1 tools)

Local Tools:

• EuropePMC_Guidelines_Search (from Unified Guideline Tools)

EuropePMCRESTTool (2 tools)

Local Tools:

• EuropePMC_get_citations (from Europe Pmc Tools)

• EuropePMC_get_references (from Europe Pmc Tools)

EuropePMCTool (1 tools)

Local Tools:

• EuropePMC_search_articles (from Europe Pmc Tools)

ExecuteTool (1 tools)

Local Tools:

• execute_tool (from Compact Mode Tools)

FDACountAdditiveReactionsTool (6 tools)

Local Tools:

• FAERS_count_additive_administration_routes (from Fda Drug Adverse Event Tools)

• FAERS_count_additive_adverse_reactions (from Fda Drug Adverse Event Tools)

• FAERS_count_additive_event_reports_by_country (from Fda Drug Adverse Event Tools)

• FAERS_count_additive_reaction_outcomes (from Fda Drug Adverse Event Tools)

• FAERS_count_additive_reports_by_reporter_country (from Fda Drug Adverse Event Tools)

• FAERS_count_additive_seriousness_classification (from Fda Drug Adverse Event Tools)

FDADrugAdverseEventDetailTool (5 tools)

Local Tools:

• FAERS_search_adverse_event_reports (from Fda Drug Adverse Event Detail Tools)

• FAERS_search_reports_by_drug_and_indication (from Fda Drug Adverse Event Detail Tools)

• FAERS_search_reports_by_drug_and_outcome (from Fda Drug Adverse Event Detail Tools)

• FAERS_search_reports_by_drug_and_reaction (from Fda Drug Adverse Event Detail Tools)

• FAERS_search_serious_reports_by_drug (from Fda Drug Adverse Event Detail Tools)

FDADrugAdverseEventTool (9 tools)

Local Tools:

• FAERS_count_country_by_drug_event (from Fda Drug Adverse Event Tools)

• FAERS_count_death_related_by_drug (from Fda Drug Adverse Event Tools)

• FAERS_count_drug_routes_by_event (from Fda Drug Adverse Event Tools)

• FAERS_count_drugs_by_drug_event (from Fda Drug Adverse Event Tools)

• FAERS_count_outcomes_by_drug_event (from Fda Drug Adverse Event Tools)

• FAERS_count_patient_age_distribution (from Fda Drug Adverse Event Tools)

• FAERS_count_reactions_by_drug_event (from Fda Drug Adverse Event Tools)

• FAERS_count_reportercountry_by_drug_event (from Fda Drug Adverse Event Tools)

• FAERS_count_seriousness_by_drug_event (from Fda Drug Adverse Event Tools)

FDADrugInteractionDetailTool (1 tools)

Local Tools:

• FAERS_search_reports_by_drug_combination (from Fda Drug Adverse Event Detail Tools)

FDADrugLabel (152 tools)

Local Tools:

• FDA_get_DEA_schedule_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_abuse_dependence_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_abuse_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_accessories_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_active_ingredient_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_adverse_reactions_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_alarms_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_animal_pharmacology_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_assembly_installation_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_boxed_warning_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_brand_name_generic_name (from Fda Drug Labeling Tools)

• FDA_get_carcinogenic_mutagenic_fertility_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_child_safety_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_clinical_pharmacology_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_clinical_studies_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_conditions_info_for_doctor_consult_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_consulting_doctor_pharmacist_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_contact_for_questions_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_contraindications_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_dependence_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_dhcp_letter_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_disposal_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_do_not_use_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_document_id_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_dosage_and_storage_information_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_dosage_forms_and_strengths_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_drug_interactions_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_SPL_ID (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_adverse_reaction (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_conditions_for_doctor_consult (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_dependence_info (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_document_id (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_dosage_info (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_environmental_warning (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_inactive_ingredient (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_labor_and_delivery_info (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_microbiology (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_other_safety_info (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_pharmacodynamics (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_pharmacogenomics (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_precautions (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_pregnancy_or_breastfeeding_info (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_principal_display_panel (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_reference (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_set_id (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_stop_use_info (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_storage_and_handling_info (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_warnings (from Fda Drug Labeling Tools)

• FDA_get_drug_name_from_patient_package_insert (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_abuse_dependence_info (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_abuse_info (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_accessories (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_active_ingredient (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_alarm (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_animal_pharmacology_info (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_application_number_NDC_number (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_assembly_installation_info (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_boxed_warning (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_child_safety_info (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_clinical_pharmacology (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_clinical_studies (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_consulting_doctor_pharmacist_info (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_contraindications (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_controlled_substance_DEA_schedule (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_dhcp_letter_info (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_disposal_info (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_dosage_forms_and_strengths_info (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_drug_interactions (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_effective_time (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_food_safety_warnings (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_general_precautions (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_geriatric_use (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_health_claim (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_indication (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_info_for_nursing_mothers (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_info_for_owner_or_caregiver (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_ingredient (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_instructions_for_use (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_lab_test_interference (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_lab_tests (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_mechanism_of_action (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_medication_guide (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_nonclinical_toxicology_info (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_nonteratogenic_effects (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_overdosage_info (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_pediatric_use (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_pharmacokinetics (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_population_use (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_pregnancy_effects_info (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_residue_warning (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_risk (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_route (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_safe_handling_warning (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_safety_summary (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_spl_indexing_data_elements (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_teratogenic_effects (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_user_safety_warning (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_warnings_and_cautions (from Fda Drug Labeling Tools)

• FDA_get_drugs_by_carcinogenic_mutagenic_fertility (from Fda Drug Labeling Tools)

• FDA_get_effective_time_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_environmental_warning_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_general_precautions_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_geriatric_use_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_health_claims_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_inactive_ingredient_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_indications_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_info_for_nursing_mothers_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_info_for_owner_caregiver_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_info_for_patients_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_ingredients_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_instructions_for_use_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_lab_test_interference_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_lab_tests_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_labor_and_delivery_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_manufacturer_name_NDC_number_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_mechanism_of_action_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_medication_guide_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_microbiology_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_nonclinical_toxicology_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_nonteratogenic_effects_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_other_safety_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_overdosage_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_patient_package_insert_from_drug_name (from Fda Drug Labeling Tools)

• FDA_get_pediatric_use_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_pharmacodynamics_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_pharmacogenomics_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_pharmacokinetics_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_population_use_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_precautions_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_pregnancy_effects_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_pregnancy_or_breastfeeding_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_principal_display_panel_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_purpose_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_recent_changes_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_reference_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_risk_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_route_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_safe_handling_warnings_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_safety_summary_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_spl_indexing_data_elements_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_spl_unclassified_section_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_stop_use_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_storage_and_handling_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_teratogenic_effects_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_user_safety_warning_by_drug_names (from Fda Drug Labeling Tools)

• FDA_get_warnings_and_cautions_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_warnings_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_when_using_info (from Fda Drug Labeling Tools)

• FDA_retrieve_device_use_by_drug_name (from Fda Drug Labeling Tools)

• FDA_retrieve_drug_name_by_device_use (from Fda Drug Labeling Tools)

• FDA_retrieve_drug_names_by_patient_medication_info (from Fda Drug Labeling Tools)

• FDA_retrieve_patient_medication_info_by_drug_name (from Fda Drug Labeling Tools)

FDADrugLabelAggregated (1 tools)

Local Tools:

• FDA_get_drug_names_by_indication_aggregated (from Fda Drug Labeling Tools)

FDADrugLabelFieldValueTool (1 tools)

Local Tools:

• FDA_get_drug_label_info_by_field_value (from Fda Drug Labeling Tools)

FDADrugLabelGetDrugGenericNameTool (1 tools)

Local Tools:

• FDA_get_drug_generic_name (from Fda Drug Labeling Tools)

FDADrugLabelStats (1 tools)

Local Tools:

• FDA_get_drug_names_by_indication_stats (from Fda Drug Labeling Tools)

FDAPharmacogenomicBiomarkersTool (1 tools)

Local Tools:

• fda_pharmacogenomic_biomarkers (from Fda Pharmacogenomic Biomarkers Tools)

FatcatScholarTool (1 tools)

Local Tools:

• Fatcat_search_scholar (from Fatcat Tools)

FileDownloadTool (1 tools)

Local Tools:

• download_file (from File Download Tools)

FourDNTool (4 tools)

Local Tools:

• FourDN_get_download_url (from Fourdn Tools)

• FourDN_get_experiment_metadata (from Fourdn Tools)

• FourDN_get_file_metadata (from Fourdn Tools)

• FourDN_search_data (from Fourdn Tools)

GBIFOccurrenceTool (1 tools)

Local Tools:

• GBIF_search_occurrences (from Gbif Tools)

GBIFTool (1 tools)

Local Tools:

• GBIF_search_species (from Gbif Tools)

GDCCNVTool (1 tools)

Local Tools:

• GDC_get_cnv_data (from Gdc Tools)

GDCCasesTool (1 tools)

Local Tools:

• GDC_search_cases (from Gdc Tools)

GDCFilesTool (1 tools)

Local Tools:

• GDC_list_files (from Gdc Tools)

GDCGeneExpressionTool (1 tools)

Local Tools:

• GDC_get_gene_expression (from Gdc Tools)

GDCMutationFrequencyTool (1 tools)

Local Tools:

• GDC_get_mutation_frequency (from Gdc Tools)

GDCProjectsTool (1 tools)

Local Tools:

• GDC_list_projects (from Gdc Tools)

GDCSSMTool (1 tools)

Local Tools:

• GDC_get_ssm_by_gene (from Gdc Tools)

GEOGetDatasetInfo (1 tools)

Local Tools:

• geo_get_dataset_info (from Geo Tools)

GEOGetSampleInfo (1 tools)

Local Tools:

• geo_get_sample_info (from Geo Tools)

GEOSearchDatasets (1 tools)

Local Tools:

• geo_search_datasets (from Geo Tools)

GINGuidelinesTool (1 tools)

Local Tools:

• GIN_Guidelines_Search (from Unified Guideline Tools)

GPCRdbTool (5 tools)

Local Tools:

• GPCRdb_get_ligands (from Gpcrdb Tools)

• GPCRdb_get_mutations (from Gpcrdb Tools)

• GPCRdb_get_protein (from Gpcrdb Tools)

• GPCRdb_get_structures (from Gpcrdb Tools)

• GPCRdb_list_proteins (from Gpcrdb Tools)

GTExEQTLTool (1 tools)

Local Tools:

• GTEx_query_eqtl (from Gtex Tools)

GTExExpressionTool (1 tools)

Local Tools:

• GTEx_get_expression_summary (from Gtex Tools)

GTExV2Tool (10 tools)

Local Tools:

• GTEx_calculate_eqtl (from Gtex V2 Tools)

• GTEx_get_dataset_info (from Gtex V2 Tools)

• GTEx_get_eqtl_genes (from Gtex V2 Tools)

• GTEx_get_gene_expression (from Gtex V2 Tools)

• GTEx_get_median_gene_expression (from Gtex V2 Tools)

• GTEx_get_multi_tissue_eqtls (from Gtex V2 Tools)

• GTEx_get_sample_info (from Gtex V2 Tools)

• GTEx_get_single_tissue_eqtls (from Gtex V2 Tools)

• GTEx_get_tissue_sites (from Gtex V2 Tools)

• GTEx_get_top_expressed_genes (from Gtex V2 Tools)

GWASAssociationByID (1 tools)

Local Tools:

• gwas_get_association_by_id (from Gwas Tools)

GWASAssociationSearch (1 tools)

Local Tools:

• gwas_search_associations (from Gwas Tools)

GWASAssociationsForSNP (1 tools)

Local Tools:

• gwas_get_associations_for_snp (from Gwas Tools)

GWASAssociationsForStudy (1 tools)

Local Tools:

• gwas_get_associations_for_study (from Gwas Tools)

GWASAssociationsForTrait (1 tools)

Local Tools:

• gwas_get_associations_for_trait (from Gwas Tools)

GWASGeneSearch (1 tools)

Local Tools:

• GWAS_search_associations_by_gene (from Gwas Tools)

GWASSNPByID (1 tools)

Local Tools:

• gwas_get_snp_by_id (from Gwas Tools)

GWASSNPSearch (1 tools)

Local Tools:

• gwas_search_snps (from Gwas Tools)

GWASSNPsForGene (1 tools)

Local Tools:

• gwas_get_snps_for_gene (from Gwas Tools)

GWASStudiesForTrait (1 tools)

Local Tools:

• gwas_get_studies_for_trait (from Gwas Tools)

GWASStudyByID (1 tools)

Local Tools:

• gwas_get_study_by_id (from Gwas Tools)

GWASStudySearch (1 tools)

Local Tools:

• gwas_search_studies (from Gwas Tools)

GWASVariantsForTrait (1 tools)

Local Tools:

• gwas_get_variants_for_trait (from Gwas Tools)

GeneOntologyTool (5 tools)

Local Tools:

• GO_get_annotations_for_gene (from Gene Ontology Tools)

• GO_get_genes_for_term (from Gene Ontology Tools)

• GO_get_term_by_id (from Gene Ontology Tools)

• GO_get_term_details (from Gene Ontology Tools)

• GO_search_terms (from Gene Ontology Tools)

GetSPLBySetIDTool (1 tools)

Local Tools:

• DailyMed_get_spl_by_setid (from Dailymed Tools)

GetToolInfo (1 tools)

Local Tools:

• get_tool_info (from Compact Mode Tools)

GrepTools (1 tools)

Local Tools:

• grep_tools (from Compact Mode Tools)

GtoPdbRESTTool (8 tools)

Local Tools:

• GtoPdb_get_disease (from Gtopdb Tools)

• GtoPdb_get_ligand (from Gtopdb Tools)

• GtoPdb_get_target (from Gtopdb Tools)

• GtoPdb_get_target_interactions (from Gtopdb Tools)

• GtoPdb_get_targets (from Gtopdb Tools)

• GtoPdb_list_diseases (from Gtopdb Tools)

• GtoPdb_list_ligands (from Gtopdb Tools)

• GtoPdb_search_interactions (from Gtopdb Tools)

HALTool (1 tools)

Local Tools:

• HAL_search_archive (from Hal Tools)

HCATool (2 tools)

Local Tools:

• hca_get_file_manifest (from Hca Tools)

• hca_search_projects (from Hca Tools)

HMDBTool (3 tools)

Local Tools:

• HMDB_get_diseases (from Hmdb Tools)

• HMDB_get_metabolite (from Hmdb Tools)

• HMDB_search (from Hmdb Tools)

HPAGetBiologicalProcessTool (1 tools)

Local Tools:

• HPA_get_biological_processes_by_gene (from Hpa Tools)

HPAGetCancerPrognosticsTool (1 tools)

Local Tools:

• HPA_get_cancer_prognostics_by_gene (from Hpa Tools)

HPAGetComparativeExpressionTool (1 tools)

Local Tools:

• HPA_get_comparative_expression_by_gene_and_cellline (from Hpa Tools)

HPAGetContextualBiologicalProcessTool (1 tools)

Local Tools:

• HPA_get_contextual_biological_process_analysis (from Hpa Tools)

HPAGetDiseaseExpressionTool (1 tools)

Local Tools:

• HPA_get_disease_expression_by_gene_tissue_disease (from Hpa Tools)

HPAGetGeneJSONTool (1 tools)

Local Tools:

• HPA_get_gene_basic_info_by_ensembl_id (from Hpa Tools)

HPAGetGenePageDetailsTool (1 tools)

Local Tools:

• HPA_get_comprehensive_gene_details_by_ensembl_id (from Hpa Tools)

HPAGetGeneXMLTool (1 tools)

Local Tools:

• HPA_get_gene_tsv_data_by_ensembl_id (from Hpa Tools)

HPAGetProteinInteractionsTool (1 tools)

Local Tools:

• HPA_get_protein_interactions_by_gene (from Hpa Tools)

HPAGetRnaExpressionBySourceTool (1 tools)

Local Tools:

• HPA_get_rna_expression_by_source (from Hpa Tools)

HPAGetRnaExpressionByTissueTool (1 tools)

Local Tools:

• HPA_get_rna_expression_in_specific_tissues (from Hpa Tools)

HPAGetSubcellularLocationTool (1 tools)

Local Tools:

• HPA_get_subcellular_location (from Hpa Tools)

HPASearchGenesTool (1 tools)

Local Tools:

• HPA_search_genes_by_query (from Hpa Tools)

HPASearchTool (1 tools)

Local Tools:

• HPA_generic_search (from Hpa Tools)

HealthDisparitiesTool (2 tools)

Local Tools:

• health_disparities_get_county_rankings_info (from Health Disparities Tools)

• health_disparities_get_svi_info (from Health Disparities Tools)

HumanBaseTool (1 tools)

Local Tools:

• humanbase_ppi_analysis (from Humanbase Tools)

IEDBTool (8 tools)

Local Tools:

• iedb_get_epitope_antigens (from Iedb Tools)

• iedb_get_epitope_mhc (from Iedb Tools)

• iedb_get_epitope_references (from Iedb Tools)

• iedb_search_antigens (from Iedb Tools)

• iedb_search_bcell (from Iedb Tools)

• iedb_search_epitopes (from Iedb Tools)

• iedb_search_mhc (from Iedb Tools)

• iedb_search_references (from Iedb Tools)

IMGTTool (3 tools)

Local Tools:

• IMGT_get_gene_info (from Imgt Tools)

• IMGT_get_sequence (from Imgt Tools)

• IMGT_search_genes (from Imgt Tools)

IntActRESTTool (8 tools)

Local Tools:

• intact_get_complex_details (from Intact Tools)

• intact_get_interaction_details (from Intact Tools)

• intact_get_interaction_network (from Intact Tools)

• intact_get_interactions (from Intact Tools)

• intact_get_interactions_by_complex (from Intact Tools)

• intact_get_interactions_by_organism (from Intact Tools)

• intact_get_interactor (from Intact Tools)

• intact_search_interactions (from Intact Tools)

InterProRESTTool (3 tools)

Local Tools:

• InterPro_get_domain_details (from Interpro Tools)

• InterPro_get_protein_domains (from Interpro Tools)

• InterPro_search_domains (from Interpro Tools)

InterProScanTool (3 tools)

Local Tools:

• InterProScan_get_job_results (from Interproscan Tools)

• InterProScan_get_job_status (from Interproscan Tools)

• InterProScan_scan_sequence (from Interproscan Tools)

JASPARRESTTool (8 tools)

Local Tools:

• JASPAR_get_transcription_factors (from Jaspar Tools)

• jaspar_get_matrix (from Jaspar Tools)

• jaspar_get_matrix_versions (from Jaspar Tools)

• jaspar_list_collections (from Jaspar Tools)

• jaspar_list_releases (from Jaspar Tools)

• jaspar_list_species (from Jaspar Tools)

• jaspar_list_taxa (from Jaspar Tools)

• jaspar_search_matrices (from Jaspar Tools)

KEGGFindGenes (1 tools)

Local Tools:

• kegg_find_genes (from Kegg Tools)

KEGGGetGeneInfo (1 tools)

Local Tools:

• kegg_get_gene_info (from Kegg Tools)

KEGGGetPathwayInfo (1 tools)

Local Tools:

• kegg_get_pathway_info (from Kegg Tools)

KEGGListOrganisms (1 tools)

Local Tools:

• kegg_list_organisms (from Kegg Tools)

KEGGSearchPathway (1 tools)

Local Tools:

• kegg_search_pathway (from Kegg Tools)

ListTools (1 tools)

Local Tools:

• list_tools (from Compact Mode Tools)

MCPAutoLoaderTool (5 tools)

Local Tools:

• mcp_auto_loader_boltz (from Boltz Mcp Loader Tools)

• mcp_auto_loader_expert_feedback (from Expert Feedback Tools)

• mcp_auto_loader_server1 (from Mcp Client Tools Example)

• mcp_auto_loader_txagent (from Txagent Client Tools)

• mcp_auto_loader_uspto_downloader (from Uspto Downloader Tools)

MCPClientTool (1 tools)

Local Tools:

• mcp_client_example (from Mcp Client Tools Example)

MCPProxyTool (2 tools)

Local Tools:

• mcp_mock_calculator (from Mcp Client Tools Example)

• mcp_mock_greeter (from Mcp Client Tools Example)

MGnifyAnalysesTool (1 tools)

Local Tools:

• MGnify_list_analyses (from Mgnify Tools)

MGnifyStudiesTool (1 tools)

Local Tools:

• MGnify_search_studies (from Mgnify Tools)

MPDRESTTool (1 tools)

Local Tools:

• MPD_get_phenotype_data (from Mpd Tools)

MarkItDownTool (1 tools)

Local Tools:

• convert_to_markdown (from Markitdown Tools)

MedRxivTool (1 tools)

Local Tools:

• MedRxiv_search_preprints (from Medrxiv Tools)

MedlinePlusRESTTool (5 tools)

Local Tools:

• MedlinePlus_connect_lookup_by_code (from Medlineplus Tools)

• MedlinePlus_get_genetics_condition_by_name (from Medlineplus Tools)

• MedlinePlus_get_genetics_gene_by_name (from Medlineplus Tools)

• MedlinePlus_get_genetics_index (from Medlineplus Tools)

• MedlinePlus_search_topics_by_keyword (from Medlineplus Tools)

MetaCycTool (4 tools)

Local Tools:

• MetaCyc_get_compound (from Metacyc Tools)

• MetaCyc_get_pathway (from Metacyc Tools)

• MetaCyc_get_reaction (from Metacyc Tools)

• MetaCyc_search_pathways (from Metacyc Tools)

MetaboLightsRESTTool (9 tools)

Local Tools:

• metabolights_get_study (from Metabolights Tools)

• metabolights_get_study_assays (from Metabolights Tools)

• metabolights_get_study_data_files (from Metabolights Tools)

• metabolights_get_study_factors (from Metabolights Tools)

• metabolights_get_study_files (from Metabolights Tools)

• metabolights_get_study_protocols (from Metabolights Tools)

• metabolights_get_study_samples (from Metabolights Tools)

• metabolights_list_studies (from Metabolights Tools)

• metabolights_search_studies (from Metabolights Tools)

MetabolomicsWorkbenchTool (6 tools)

Local Tools:

• MetabolomicsWorkbench_get_compound_by_pubchem_cid (from Metabolomics Workbench Tools)

• MetabolomicsWorkbench_get_refmet_info (from Metabolomics Workbench Tools)

• MetabolomicsWorkbench_get_study (from Metabolomics Workbench Tools)

• MetabolomicsWorkbench_search_by_exact_mass (from Metabolomics Workbench Tools)

• MetabolomicsWorkbench_search_by_mz (from Metabolomics Workbench Tools)

• MetabolomicsWorkbench_search_compound_by_name (from Metabolomics Workbench Tools)

Molecule2DTool (1 tools)

Local Tools:

• visualize_molecule_2d (from Molecule 2D Tools)

Molecule3DTool (1 tools)

Local Tools:

• visualize_molecule_3d (from Molecule 3D Tools)

Monarch (2 tools)

Local Tools:

• get_HPO_ID_by_phenotype (from Monarch Tools)

• get_phenotype_by_HPO_ID (from Monarch Tools)

MonarchDiseasesForMultiplePheno (1 tools)

Local Tools:

• get_joint_associated_diseases_by_HPO_ID_list (from Monarch Tools)

MyChemTool (2 tools)

Local Tools:

• MyChem_get_chemical_annotation (from Biothings Tools)

• MyChem_query_chemicals (from Biothings Tools)

MyGeneTool (3 tools)

Local Tools:

• MyGene_batch_query (from Biothings Tools)

• MyGene_get_gene_annotation (from Biothings Tools)

• MyGene_query_genes (from Biothings Tools)

MyVariantTool (2 tools)

Local Tools:

• MyVariant_get_variant_annotation (from Biothings Tools)

• MyVariant_query_variants (from Biothings Tools)

NCBIBlastTool (2 tools)

Local Tools:

• BLAST_nucleotide_search (from Blast Tools)

• BLAST_protein_search (from Blast Tools)

NCBINucleotideSearchTool (3 tools)

Local Tools:

• NCBI_fetch_accessions (from Ncbi Nucleotide Tools)

• NCBI_get_sequence (from Ncbi Nucleotide Tools)

• NCBI_search_nucleotide (from Ncbi Nucleotide Tools)

NHANESTool (2 tools)

Local Tools:

• nhanes_get_dataset_info (from Nhanes Tools)

• nhanes_search_datasets (from Nhanes Tools)

NICEGuidelineFullTextTool (1 tools)

Local Tools:

• NICE_Guideline_Full_Text (from Unified Guideline Tools)

NICEWebScrapingTool (1 tools)

Local Tools:

• NICE_Clinical_Guidelines_Search (from Unified Guideline Tools)

NvidiaNIMTool (16 tools)

Local Tools:

• NvidiaNIM_alphafold2 (from Nvidia Nim Tools)

• NvidiaNIM_alphafold2_multimer (from Nvidia Nim Tools)

• NvidiaNIM_boltz2 (from Nvidia Nim Tools)

• NvidiaNIM_diffdock (from Nvidia Nim Tools)

• NvidiaNIM_esm2_650m (from Nvidia Nim Tools)

• NvidiaNIM_esmfold (from Nvidia Nim Tools)

• NvidiaNIM_evo2 (from Nvidia Nim Tools)

• NvidiaNIM_genmol (from Nvidia Nim Tools)

• NvidiaNIM_maisi (from Nvidia Nim Tools)

• NvidiaNIM_molmim (from Nvidia Nim Tools)

• NvidiaNIM_msa_search (from Nvidia Nim Tools)

• NvidiaNIM_openfold2 (from Nvidia Nim Tools)

• NvidiaNIM_openfold3 (from Nvidia Nim Tools)

• NvidiaNIM_proteinmpnn (from Nvidia Nim Tools)

• NvidiaNIM_rfdiffusion (from Nvidia Nim Tools)

• NvidiaNIM_vista3d (from Nvidia Nim Tools)

OBISOccurrenceTool (1 tools)

Local Tools:

• OBIS_search_occurrences (from Obis Tools)

OBISTaxaTool (1 tools)

Local Tools:

• OBIS_search_taxa (from Obis Tools)

ODPHPItemList (1 tools)

Local Tools:

• odphp_itemlist (from Odphp Tools)

ODPHPMyHealthfinder (1 tools)

Local Tools:

• odphp_myhealthfinder (from Odphp Tools)

ODPHPOutlinkFetch (1 tools)

Local Tools:

• odphp_outlink_fetch (from Odphp Tools)

ODPHPTopicSearch (1 tools)

Local Tools:

• odphp_topicsearch (from Odphp Tools)

OLSRESTTool (5 tools)

Local Tools:

• ols_get_efo_ontology_info (from Efo Tools)

• ols_get_efo_term (from Efo Tools)

• ols_get_efo_term_children (from Efo Tools)

• ols_list_ontologies (from Efo Tools)

• ols_search_efo_terms (from Efo Tools)

OLSTool (7 tools)

Local Tools:

• ols_find_similar_terms (from Ols Tools)

• ols_get_ontology_info (from Ols Tools)

• ols_get_term_ancestors (from Ols Tools)

• ols_get_term_children (from Ols Tools)

• ols_get_term_info (from Ols Tools)

• ols_search_ontologies (from Ols Tools)

• ols_search_terms (from Ols Tools)

OMIMTool (4 tools)

Local Tools:

• OMIM_get_clinical_synopsis (from Omim Tools)

• OMIM_get_entry (from Omim Tools)

• OMIM_get_gene_map (from Omim Tools)

• OMIM_search (from Omim Tools)

OSFPreprintsTool (1 tools)

Local Tools:

• OSF_search_preprints (from Osf Preprints Tools)

OncoKBTool (5 tools)

Local Tools:

• OncoKB_annotate_copy_number (from Oncokb Tools)

• OncoKB_annotate_variant (from Oncokb Tools)

• OncoKB_get_cancer_genes (from Oncokb Tools)

• OncoKB_get_gene_info (from Oncokb Tools)

• OncoKB_get_levels (from Oncokb Tools)

OpenAIRETool (1 tools)

Local Tools:

• OpenAIRE_search_publications (from Openaire Tools)

OpenAlexGuidelinesTool (1 tools)

Local Tools:

• OpenAlex_Guidelines_Search (from Unified Guideline Tools)

OpenAlexRESTTool (7 tools)

Local Tools:

• openalex_get_author (from Openalex Tools)

• openalex_get_institution (from Openalex Tools)

• openalex_get_work (from Openalex Tools)

• openalex_get_work_by_doi (from Openalex Tools)

• openalex_search_authors (from Openalex Tools)

• openalex_search_institutions (from Openalex Tools)

• openalex_search_works (from Openalex Tools)

OpenAlexTool (1 tools)

Local Tools:

• openalex_literature_search (from Openalex Tools)

OpenTarget (55 tools)

Local Tools:

• OpenTargets_drug_pharmacogenomics_data (from Opentarget Tools)

• OpenTargets_get_approved_indications_by_drug_chemblId (from Opentarget Tools)

• OpenTargets_get_associated_diseases_by_drug_chemblId (from Opentarget Tools)

• OpenTargets_get_associated_drugs_by_disease_efoId (from Opentarget Tools)

• OpenTargets_get_associated_drugs_by_target_ensemblID (from Opentarget Tools)

• OpenTargets_get_associated_phenotypes_by_disease_efoId (from Opentarget Tools)

• OpenTargets_get_associated_targets_by_disease_efoId (from Opentarget Tools)

• OpenTargets_get_associated_targets_by_drug_chemblId (from Opentarget Tools)

• OpenTargets_get_biological_mouse_models_by_ensemblID (from Opentarget Tools)

• OpenTargets_get_chemical_probes_by_target_ensemblID (from Opentarget Tools)

• OpenTargets_get_disease_ancestors_parents_by_efoId (from Opentarget Tools)

• OpenTargets_get_disease_descendants_children_by_efoId (from Opentarget Tools)

• OpenTargets_get_disease_description_by_efoId (from Opentarget Tools)

• OpenTargets_get_disease_id_description_by_name (from Opentarget Tools)

• OpenTargets_get_disease_ids_by_efoId (from Idmap Tools)

• OpenTargets_get_disease_ids_by_name (from Idmap Tools)

• OpenTargets_get_disease_locations_by_efoId (from Opentarget Tools)

• OpenTargets_get_disease_synonyms_by_efoId (from Opentarget Tools)

• OpenTargets_get_disease_therapeutic_areas_by_efoId (from Opentarget Tools)

• OpenTargets_get_diseases_phenotypes_by_target_ensembl (from Opentarget Tools)

• OpenTargets_get_drug_adverse_events_by_chemblId (from Opentarget Tools)

• OpenTargets_get_drug_approval_status_by_chemblId (from Opentarget Tools)

• OpenTargets_get_drug_blackbox_status_by_chembl_ID (from Opentarget Tools)

• OpenTargets_get_drug_description_by_chemblId (from Opentarget Tools)

• OpenTargets_get_drug_indications_by_chemblId (from Opentarget Tools)

• OpenTargets_get_drug_mechanisms_of_action_by_chemblId (from Opentarget Tools)

• OpenTargets_get_drug_names_by_chemblId (from Opentarget Tools)

• OpenTargets_get_drug_synonyms_by_chemblId (from Opentarget Tools)

• OpenTargets_get_drug_trade_names_by_chemblId (from Opentarget Tools)

• OpenTargets_get_drug_warnings_by_chemblId (from Opentarget Tools)

• OpenTargets_get_gene_ontology_terms_by_goID (from Opentarget Tools)

• OpenTargets_get_known_drugs_by_drug_chemblId (from Opentarget Tools)

• OpenTargets_get_parent_child_molecules_by_chembl_ID (from Opentarget Tools)

• OpenTargets_get_publications_by_disease_efoId (from Opentarget Tools)

• OpenTargets_get_publications_by_drug_chemblId (from Opentarget Tools)

• OpenTargets_get_publications_by_target_ensemblID (from Opentarget Tools)

• OpenTargets_get_similar_entities_by_disease_efoId (from Opentarget Tools)

• OpenTargets_get_similar_entities_by_drug_chemblId (from Opentarget Tools)

• OpenTargets_get_similar_entities_by_target_ensemblID (from Opentarget Tools)

• OpenTargets_get_target_classes_by_ensemblID (from Opentarget Tools)

• OpenTargets_get_target_constraint_info_by_ensemblID (from Opentarget Tools)

• OpenTargets_get_target_enabling_packages_by_ensemblID (from Opentarget Tools)

• OpenTargets_get_target_gene_ontology_by_ensemblID (from Opentarget Tools)

• OpenTargets_get_target_genomic_location_by_ensemblID (from Opentarget Tools)

• OpenTargets_get_target_homologues_by_ensemblID (from Opentarget Tools)

• OpenTargets_get_target_id_description_by_name (from Opentarget Tools)

• OpenTargets_get_target_interactions_by_ensemblID (from Opentarget Tools)

• OpenTargets_get_target_safety_profile_by_ensemblID (from Opentarget Tools)

• OpenTargets_get_target_subcell_locations_by_ensembl_ID (from Opentarget Tools)

• OpenTargets_get_target_synonyms_by_ensemblID (from Opentarget Tools)

• OpenTargets_get_target_tractability_by_ensemblID (from Opentarget Tools)

• OpenTargets_map_any_disease_id_to_all_other_ids (from Idmap Tools)

• OpenTargets_multi_entity_search_by_query_string (from Opentarget Tools)

• OpenTargets_search_category_counts_by_query_string (from Opentarget Tools)

• OpenTargets_target_disease_evidence (from Opentarget Tools)

OpentargetToolDrugNameMatch (2 tools)

Local Tools:

• OpenTargets_get_drug_chembId_by_generic_name (from Opentarget Tools)

• OpenTargets_get_drug_id_description_by_name (from Opentarget Tools)

OrphanetTool (5 tools)

Local Tools:

• Orphanet_get_classification (from Orphanet Tools)

• Orphanet_get_disease (from Orphanet Tools)

• Orphanet_get_genes (from Orphanet Tools)

• Orphanet_search_by_name (from Orphanet Tools)

• Orphanet_search_diseases (from Orphanet Tools)

PDBeAPIRESTTool (10 tools)

Local Tools:

• pdbe_get_entry_assemblies (from Pdbe Api Tools)

• pdbe_get_entry_experiment (from Pdbe Api Tools)

• pdbe_get_entry_molecules (from Pdbe Api Tools)

• pdbe_get_entry_observed_residues_ratio (from Pdbe Api Tools)

• pdbe_get_entry_publications (from Pdbe Api Tools)

• pdbe_get_entry_quality (from Pdbe Api Tools)

• pdbe_get_entry_related_publications (from Pdbe Api Tools)

• pdbe_get_entry_secondary_structure (from Pdbe Api Tools)

• pdbe_get_entry_status (from Pdbe Api Tools)

• pdbe_get_entry_summary (from Pdbe Api Tools)

PMCTool (1 tools)

Local Tools:

• PMC_search_papers (from Pmc Tools)

PRIDERESTTool (3 tools)

Local Tools:

• PRIDE_get_project (from Pride Tools)

• PRIDE_get_project_files (from Pride Tools)

• PRIDE_search_proteomics (from Pride Tools)

PackageTool (163 tools)

Local Tools:

• get_albumentations_info (from Image Processing Tools)

• get_altair_info (from Visualization Tools)

• get_anndata_info (from Single Cell Tools)

• get_arboreto_info (from Genomics Tools)

• get_arxiv_info (from Bioinformatics Core Tools)

• get_ase_info (from Structural Biology Tools)

• get_astropy_info (from Physics Astronomy Tools)

• get_biopandas_info (from Structural Biology Tools)

• get_biopython_info (from Bioinformatics Core Tools)

• get_bioservices_info (from Bioinformatics Core Tools)

• get_biotite_info (from Bioinformatics Core Tools)

• get_bokeh_info (from Visualization Tools)

• get_brian2_info (from Neuroscience Tools)

• get_cartopy_info (from Earth Sciences Tools)

• get_catboost_info (from Machine Learning Tools)

• get_cellpose_info (from Visualization Tools)

• get_cellrank_info (from Single Cell Tools)

• get_cellxgene_census_info (from Genomics Tools)

• get_cftime_info (from Earth Sciences Tools)

• get_chembl_webresource_client_info (from Cheminformatics Tools)

• get_clair3_info (from Genomics Tools)

• get_cobra_info (from Cheminformatics Tools)

• get_cobrapy_info (from Machine Learning Tools)

• get_cooler_info (from Scientific Computing Tools)

• get_cryosparc_tools_info (from Bioinformatics Core Tools)

• get_cupy_info (from Scientific Computing Tools)

• get_cyvcf2_info (from Genomics Tools)

• get_dask_info (from Scientific Computing Tools)

• get_datamol_info (from Cheminformatics Tools)

• get_datashader_info (from Visualization Tools)

• get_deepchem_info (from Cheminformatics Tools)

• get_deeppurpose_info (from Machine Learning Tools)

• get_deeptools_info (from Genomics Tools)

• get_deepxde_info (from Machine Learning Tools)

• get_dendropy_info (from Bioinformatics Core Tools)

• get_descriptastorus_info (from Structural Biology Tools)

• get_diffdock_info (from Structural Biology Tools)

• get_dscribe_info (from Cheminformatics Tools)

• get_elephant_info (from Neuroscience Tools)

• get_episcanpy_info (from Single Cell Tools)

• get_ete3_info (from Bioinformatics Core Tools)

• get_faiss_info (from Machine Learning Tools)

• get_fanc_info (from Bioinformatics Core Tools)

• get_flask_info (from Bioinformatics Core Tools)

• get_flowio_info (from Bioinformatics Core Tools)

• get_flowkit_info (from Bioinformatics Core Tools)

• get_flowutils_info (from Scientific Computing Tools)

• get_freesasa_info (from Structural Biology Tools)

• get_galpy_info (from Physics Astronomy Tools)

• get_geopandas_info (from Earth Sciences Tools)

• get_gget_info (from Bioinformatics Core Tools)

• get_googlesearch_python_info (from Bioinformatics Core Tools)

• get_gseapy_info (from Genomics Tools)

• get_h5py_info (from Scientific Computing Tools)

• get_harmony_pytorch_info (from Machine Learning Tools)

• get_hmmlearn_info (from Machine Learning Tools)

• get_holoviews_info (from Visualization Tools)

• get_htmd_info (from Structural Biology Tools)

• get_igraph_info (from Visualization Tools)

• get_imageio_info (from Image Processing Tools)

• get_imbalanced_learn_info (from Machine Learning Tools)

• get_jcvi_info (from Genomics Tools)

• get_joblib_info (from Scientific Computing Tools)

• get_khmer_info (from Bioinformatics Core Tools)

• get_kipoiseq_info (from Genomics Tools)

• get_lifelines_info (from Bioinformatics Core Tools)

• get_lightgbm_info (from Machine Learning Tools)

• get_loompy_info (from Bioinformatics Core Tools)

• get_mageck_info (from Bioinformatics Core Tools)

• get_matplotlib_info (from Visualization Tools)

• get_mdanalysis_info (from Structural Biology Tools)

• get_mdtraj_info (from Structural Biology Tools)

• get_mne_info (from Neuroscience Tools)

• get_molfeat_info (from Cheminformatics Tools)

• get_molvs_info (from Cheminformatics Tools)

• get_mordred_info (from Cheminformatics Tools)

• get_msprime_info (from Bioinformatics Core Tools)

• get_mudata_info (from Single Cell Tools)

• get_neo_info (from Neuroscience Tools)

• get_netcdf4_info (from Earth Sciences Tools)

• get_networkx_info (from Bioinformatics Core Tools)

• get_nglview_info (from Structural Biology Tools)

• get_nilearn_info (from Neuroscience Tools)

• get_numba_info (from Bioinformatics Core Tools)

• get_numpy_info (from Scientific Computing Tools)

• get_openbabel_info (from Cheminformatics Tools)

• get_openchem_info (from Cheminformatics Tools)

• get_opencv_info (from Visualization Tools)

• get_openmm_info (from Structural Biology Tools)

• get_optlang_info (from Scientific Computing Tools)

• get_optuna_info (from Machine Learning Tools)

• get_palantir_info (from Single Cell Tools)

• get_pandas_info (from Scientific Computing Tools)

• get_patsy_info (from Scientific Computing Tools)

• get_pdbfixer_info (from Bioinformatics Core Tools)

• get_pillow_info (from Image Processing Tools)

• get_plantcv_info (from Visualization Tools)

• get_plip_info (from Bioinformatics Core Tools)

• get_plotly_info (from Visualization Tools)

• get_poliastro_info (from Bioinformatics Core Tools)

• get_poretools_info (from Genomics Tools)

• get_prody_info (from Bioinformatics Core Tools)

• get_pubchempy_info (from Cheminformatics Tools)

• get_pybedtools_info (from Genomics Tools)

• get_pybigwig_info (from Bioinformatics Core Tools)

• get_pydeseq2_info (from Genomics Tools)

• get_pyensembl_info (from Genomics Tools)

• get_pyephem_info (from Physics Astronomy Tools)

• get_pyfaidx_info (from Genomics Tools)

• get_pyfasta_info (from Genomics Tools)

• get_pykalman_info (from Bioinformatics Core Tools)

• get_pyliftover_info (from Genomics Tools)

• get_pymassspec_info (from Bioinformatics Core Tools)

• get_pymed_info (from Bioinformatics Core Tools)

• get_pymzml_info (from Machine Learning Tools)

• get_pypdf2_info (from Bioinformatics Core Tools)

• get_pyranges_info (from Genomics Tools)

• get_pyrosetta_info (from Structural Biology Tools)

• get_pysam_info (from Genomics Tools)

• get_pyscenic_info (from Single Cell Tools)

• get_pyscf_info (from Structural Biology Tools)

• get_pyscreener_info (from Bioinformatics Core Tools)

• get_pytdc_info (from Bioinformatics Core Tools)

• get_python_libsbml_info (from Machine Learning Tools)

• get_pytorch_info (from Machine Learning Tools)

• get_pyvcf_info (from Genomics Tools)

• get_pyvis_info (from Visualization Tools)

• get_qutip_info (from Physics Astronomy Tools)

• get_rasterio_info (from Earth Sciences Tools)

• get_rdkit_info (from Cheminformatics Tools)

• get_reportlab_info (from Genomics Tools)

• get_requests_info (from Bioinformatics Core Tools)

• get_ruptures_info (from Bioinformatics Core Tools)

• get_scanorama_info (from Single Cell Tools)

• get_scanpy_info (from Single Cell Tools)

• get_schnetpack_info (from Machine Learning Tools)

• get_scholarly_info (from Bioinformatics Core Tools)

• get_scikit_bio_info (from Bioinformatics Core Tools)

• get_scikit_image_info (from Visualization Tools)

• get_scikit_learn_info (from Machine Learning Tools)

• get_scipy_info (from Scientific Computing Tools)

• get_scrublet_info (from Single Cell Tools)

• get_scvelo_info (from Single Cell Tools)

• get_scvi_tools_info (from Single Cell Tools)

• get_seaborn_info (from Visualization Tools)

• get_skopt_info (from Machine Learning Tools)

• get_souporcell_info (from Single Cell Tools)

• get_statsmodels_info (from Machine Learning Tools)

• get_sunpy_info (from Physics Astronomy Tools)

• get_sympy_info (from Scientific Computing Tools)

• get_tiledb_info (from Scientific Computing Tools)

• get_tiledbsoma_info (from Single Cell Tools)

• get_torch_geometric_info (from Machine Learning Tools)

• get_tqdm_info (from Scientific Computing Tools)

• get_trackpy_info (from Bioinformatics Core Tools)

• get_tskit_info (from Bioinformatics Core Tools)

• get_umap_learn_info (from Machine Learning Tools)

• get_velocyto_info (from Single Cell Tools)

• get_viennarna_info (from Genomics Tools)

• get_xarray_info (from Scientific Computing Tools)

• get_xesmf_info (from Earth Sciences Tools)

• get_xgboost_info (from Machine Learning Tools)

• get_zarr_info (from Scientific Computing Tools)

PaleobiologyRESTTool (1 tools)

Local Tools:

• Paleobiology_get_fossils (from Paleobiology Tools)

PathwayCommonsTool (2 tools)

Local Tools:

• pc_get_interactions (from Pathway Commons Tools)

• pc_search_pathways (from Pathway Commons Tools)

PharmGKBTool (7 tools)

Local Tools:

• PharmGKB_get_clinical_annotations (from Pharmgkb Tools)

• PharmGKB_get_dosing_guidelines (from Pharmgkb Tools)

• PharmGKB_get_drug_details (from Pharmgkb Tools)

• PharmGKB_get_gene_details (from Pharmgkb Tools)

• PharmGKB_search_drugs (from Pharmgkb Tools)

• PharmGKB_search_genes (from Pharmgkb Tools)

• PharmGKB_search_variants (from Pharmgkb Tools)

PharosTool (4 tools)

Local Tools:

• Pharos_get_disease_targets (from Pharos Tools)

• Pharos_get_target (from Pharos Tools)

• Pharos_get_tdl_summary (from Pharos Tools)

• Pharos_search_targets (from Pharos Tools)

ProteinStructure3DTool (1 tools)

Local Tools:

• visualize_protein_structure_3d (from Protein Structure 3D Tools)

ProteinsAPIRESTTool (10 tools)

Local Tools:

• proteins_api_get_comments (from Proteins Api Tools)

• proteins_api_get_epitopes (from Proteins Api Tools)

• proteins_api_get_features (from Proteins Api Tools)

• proteins_api_get_genome_mappings (from Proteins Api Tools)

• proteins_api_get_protein (from Proteins Api Tools)

• proteins_api_get_proteomics (from Proteins Api Tools)

• proteins_api_get_publications (from Proteins Api Tools)

• proteins_api_get_variants (from Proteins Api Tools)

• proteins_api_get_xrefs (from Proteins Api Tools)

• proteins_api_search (from Proteins Api Tools)

PubChemRESTTool (18 tools)

Local Tools:

• PubChem_get_CID_by_SMILES (from Pubchem Tools)

• PubChem_get_CID_by_compound_name (from Pubchem Tools)

• PubChem_get_assay_active_compounds (from Pubchem Tools)

• PubChem_get_assay_description (from Pubchem Tools)

• PubChem_get_assay_dose_response (from Pubchem Tools)

• PubChem_get_assay_summary (from Pubchem Tools)

• PubChem_get_assay_targets (from Pubchem Tools)

• PubChem_get_assays_for_compound_active (from Pubchem Tools)

• PubChem_get_associated_patents_by_CID (from Pubchem Tools)

• PubChem_get_compound_2D_image_by_CID (from Pubchem Tools)

• PubChem_get_compound_bioactivity (from Pubchem Tools)

• PubChem_get_compound_properties_by_CID (from Pubchem Tools)

• PubChem_get_compound_synonyms_by_CID (from Pubchem Tools)

• PubChem_get_compound_xrefs_by_CID (from Pubchem Tools)

• PubChem_search_assays_by_target_gene (from Pubchem Tools)

• PubChem_search_assays_by_type (from Pubchem Tools)

• PubChem_search_compounds_by_similarity (from Pubchem Tools)

• PubChem_search_compounds_by_substructure (from Pubchem Tools)

PubMedGuidelinesTool (1 tools)

Local Tools:

• PubMed_Guidelines_Search (from Unified Guideline Tools)

PubMedRESTTool (5 tools)

Local Tools:

• PubMed_get_article (from Pubmed Tools)

• PubMed_get_cited_by (from Pubmed Tools)

• PubMed_get_links (from Pubmed Tools)

• PubMed_get_related (from Pubmed Tools)

• PubMed_search_articles (from Pubmed Tools)

PubTatorTool (2 tools)

Local Tools:

• PubTator3_EntityAutocomplete (from Pubtator Tools)

• PubTator3_LiteratureSearch (from Pubtator Tools)

PyPIPackageInspector (1 tools)

Local Tools:

• PyPIPackageInspector (from Pypi Package Inspector Tools)

PythonCodeExecutor (1 tools)

Local Tools:

• python_code_executor (from Python Executor Tools)

PythonScriptRunner (1 tools)

Local Tools:

• python_script_runner (from Python Executor Tools)

RCSBSearchTool (1 tools)

Local Tools:

• PDB_search_similar_structures (from Rcsb Search Tools)

RCSBTool (39 tools)

Local Tools:

• get_assembly_info_by_pdb_id (from Rcsb Pdb Tools)

• get_assembly_summary (from Rcsb Pdb Tools)

• get_binding_affinity_by_pdb_id (from Rcsb Pdb Tools)

• get_chem_comp_audit_info (from Rcsb Pdb Tools)

• get_chem_comp_charge_and_ambiguity (from Rcsb Pdb Tools)

• get_citation_info_by_pdb_id (from Rcsb Pdb Tools)

• get_core_refinement_statistics (from Rcsb Pdb Tools)

• get_crystal_growth_conditions_by_pdb_id (from Rcsb Pdb Tools)

• get_crystallization_ph_by_pdb_id (from Rcsb Pdb Tools)

• get_crystallographic_properties_by_pdb_id (from Rcsb Pdb Tools)

• get_ec_number_by_entity_id (from Rcsb Pdb Tools)

• get_em_3d_fitting_and_reconstruction_details (from Rcsb Pdb Tools)

• get_emdb_ids_by_pdb_id (from Rcsb Pdb Tools)

• get_gene_name_by_entity_id (from Rcsb Pdb Tools)

• get_host_organism_by_pdb_id (from Rcsb Pdb Tools)

• get_ligand_bond_count_by_pdb_id (from Rcsb Pdb Tools)

• get_ligand_smiles_by_chem_comp_id (from Rcsb Pdb Tools)

• get_mutation_annotations_by_pdb_id (from Rcsb Pdb Tools)

• get_oligosaccharide_descriptors_by_entity_id (from Rcsb Pdb Tools)

• get_polymer_entity_annotations (from Rcsb Pdb Tools)

• get_polymer_entity_count_by_pdb_id (from Rcsb Pdb Tools)

• get_polymer_entity_ids_by_pdb_id (from Rcsb Pdb Tools)

• get_polymer_entity_type_by_entity_id (from Rcsb Pdb Tools)

• get_polymer_molecular_weight_by_entity_id (from Rcsb Pdb Tools)

• get_protein_classification_by_pdb_id (from Rcsb Pdb Tools)

• get_protein_metadata_by_pdb_id (from Rcsb Pdb Tools)

• get_refinement_resolution_by_pdb_id (from Rcsb Pdb Tools)

• get_release_deposit_dates_by_pdb_id (from Rcsb Pdb Tools)

• get_sequence_by_pdb_id (from Rcsb Pdb Tools)

• get_sequence_lengths_by_pdb_id (from Rcsb Pdb Tools)

• get_sequence_positional_features_by_instance_id (from Rcsb Pdb Tools)

• get_source_organism_by_pdb_id (from Rcsb Pdb Tools)

• get_space_group_by_pdb_id (from Rcsb Pdb Tools)

• get_structure_determination_software_by_pdb_id (from Rcsb Pdb Tools)

• get_structure_title_by_pdb_id (from Rcsb Pdb Tools)

• get_structure_validation_metrics_by_pdb_id (from Rcsb Pdb Tools)

• get_target_cofactor_info (from Rcsb Pdb Tools)

• get_taxonomy_by_pdb_id (from Rcsb Pdb Tools)

• get_uniprot_accession_by_entity_id (from Rcsb Pdb Tools)

RNAcentralGetTool (1 tools)

Local Tools:

• RNAcentral_get_by_accession (from Rnacentral Tools)

RNAcentralSearchTool (1 tools)

Local Tools:

• RNAcentral_search (from Rnacentral Tools)

ReMapRESTTool (1 tools)

Local Tools:

• ReMap_get_transcription_factor_binding (from Remap Tools)

ReactomeRESTTool (20 tools)

Local Tools:

• Reactome_get_complex (from Reactome Tools)

• Reactome_get_database_version (from Reactome Tools)

• Reactome_get_diseases (from Reactome Tools)

• Reactome_get_entity_compartment (from Reactome Tools)

• Reactome_get_entity_events (from Reactome Tools)

• Reactome_get_event_ancestors (from Reactome Tools)

• Reactome_get_events_hierarchy (from Reactome Tools)

• Reactome_get_interactor (from Reactome Tools)

• Reactome_get_participant_reference_entities (from Reactome Tools)

• Reactome_get_participants (from Reactome Tools)

• Reactome_get_pathway (from Reactome Tools)

• Reactome_get_pathway_hierarchy (from Reactome Tools)

• Reactome_get_pathway_reactions (from Reactome Tools)

• Reactome_get_pathways_low_entity (from Reactome Tools)

• Reactome_get_reaction (from Reactome Tools)

• Reactome_list_species (from Reactome Tools)

• Reactome_list_top_pathways (from Reactome Tools)

• Reactome_map_uniprot_to_pathways (from Reactome Tools)

• Reactome_map_uniprot_to_reactions (from Reactome Tools)

• Reactome_query_by_ids (from Reactome Tools)

RegulomeDBRESTTool (1 tools)

Local Tools:

• RegulomeDB_query_variant (from Regulomedb Tools)

RemoteTool (14 tools)

Remote Tools:

• boltz2_docking (from Boltz Tools)

• compute_depmap24q2_gene_correlations (from Depmap Tools)

• consult_human_expert (from Expert Feedback Tools)

• get_abstract_from_patent_app_number (from Uspto Downloader Tools)

• get_claims_from_patent_app_number (from Uspto Downloader Tools)

• get_expert_response (from Expert Feedback Tools)

• get_expert_status (from Expert Feedback Tools)

• get_full_text_from_patent_app_number (from Uspto Downloader Tools)

• list_pending_expert_requests (from Expert Feedback Tools)

• mcp_auto_loader_human_expert (from Expert Feedback Tools)

• run_compass_prediction (from Immune Compass Tools)

• run_pinnacle_ppi_retrieval (from Pinnacle Tools)

• run_transcriptformer_embedding_retrieval (from Transcriptformer Tools)

• submit_expert_response (from Expert Feedback Tools)

RfamTool (9 tools)

Local Tools:

• Rfam_accession_to_id (from Rfam Tools)

• Rfam_get_alignment (from Rfam Tools)

• Rfam_get_covariance_model (from Rfam Tools)

• Rfam_get_family (from Rfam Tools)

• Rfam_get_sequence_regions (from Rfam Tools)

• Rfam_get_structure_mapping (from Rfam Tools)

• Rfam_get_tree_data (from Rfam Tools)

• Rfam_id_to_accession (from Rfam Tools)

• Rfam_search_sequence (from Rfam Tools)

RxNormTool (1 tools)

Local Tools:

• RxNorm_get_drug_names (from Rxnorm Tools)

SAbDabTool (3 tools)

Local Tools:

• SAbDab_get_structure (from Sabdab Tools)

• SAbDab_get_summary (from Sabdab Tools)

• SAbDab_search_structures (from Sabdab Tools)

SCREENRESTTool (1 tools)

Local Tools:

• SCREEN_get_regulatory_elements (from Screen Tools)

SIMBADAdvancedTool (1 tools)

Local Tools:

• SIMBAD_advanced_query (from Simbad Tools)

SIMBADTool (1 tools)

Local Tools:

• SIMBAD_query_object (from Simbad Tools)

STITCHTool (3 tools)

Local Tools:

• STITCH_get_chemical_protein_interactions (from Stitch Tools)

• STITCH_get_interaction_partners (from Stitch Tools)

• STITCH_resolve_identifier (from Stitch Tools)

STRINGRESTTool (1 tools)

Local Tools:

• STRING_get_protein_interactions (from Ppi Tools)

SearchSPLTool (1 tools)

Local Tools:

• DailyMed_search_spls (from Dailymed Tools)

SemanticScholarTool (1 tools)

Local Tools:

• SemanticScholar_search_papers (from Semantic Scholar Tools)

SmolAgentTool (2 tools)

Local Tools:

• advanced_literature_search_agent (from Smolagent Tools)

• open_deep_research_agent (from Smolagent Tools)

SpecialTool (2 tools)

Local Tools:

• CallAgent (from Special Tools)

• Finish (from Special Tools)

SpliceAITool (3 tools)

Local Tools:

• SpliceAI_get_max_delta (from Spliceai Tools)

• SpliceAI_predict_pangolin (from Spliceai Tools)

• SpliceAI_predict_splice (from Spliceai Tools)

TRIPDatabaseTool (1 tools)

Local Tools:

• TRIP_Database_Guidelines_Search (from Unified Guideline Tools)

TextDownloadTool (1 tools)

Local Tools:

• download_text_content (from File Download Tools)

TheraSAbDabTool (3 tools)

Local Tools:

• TheraSAbDab_get_all_therapeutics (from Therasabdab Tools)

• TheraSAbDab_search_by_target (from Therasabdab Tools)

• TheraSAbDab_search_therapeutics (from Therasabdab Tools)

ToolFinderEmbedding (2 tools)

Local Tools:

• Tool_Finder (from Finder Tools)

• Tool_RAG (from Finder Tools)

ToolFinderKeyword (1 tools)

Local Tools:

• Tool_Finder_Keyword (from Finder Tools)

ToolFinderLLM (1 tools)

Local Tools:

• Tool_Finder_LLM (from Finder Tools)

UMLSRESTTool (5 tools)

Local Tools:

• icd_search_codes (from Umls Tools)

• loinc_search_codes (from Umls Tools)

• snomed_search_concepts (from Umls Tools)

• umls_get_concept_details (from Umls Tools)

• umls_search_concepts (from Umls Tools)

URLHTMLTagTool (1 tools)

Local Tools:

• get_webpage_title (from Url Fetch Tools)

URLToPDFTextTool (1 tools)

Local Tools:

• get_webpage_text_from_url (from Url Fetch Tools)

USPTOOpenDataPortalTool (6 tools)

Local Tools:

• get_associated_documents_metadata (from Uspto Tools)

• get_patent_application_metadata (from Uspto Tools)

• get_patent_continuity_data (from Uspto Tools)

• get_patent_foreign_priority_data (from Uspto Tools)

• get_patent_overview_by_text_query (from Uspto Tools)

• get_patent_term_adjustment_data (from Uspto Tools)

UniProtRESTTool (17 tools)

Local Tools:

• UniProt_get_alternative_names_by_accession (from Uniprot Tools)

• UniProt_get_disease_variants_by_accession (from Uniprot Tools)

• UniProt_get_entry_by_accession (from Uniprot Tools)

• UniProt_get_function_by_accession (from Uniprot Tools)

• UniProt_get_isoform_ids_by_accession (from Uniprot Tools)

• UniProt_get_organism_by_accession (from Uniprot Tools)

• UniProt_get_proteome (from Uniprot Tools)

• UniProt_get_ptm_processing_by_accession (from Uniprot Tools)

• UniProt_get_recommended_name_by_accession (from Uniprot Tools)

• UniProt_get_sequence_by_accession (from Uniprot Tools)

• UniProt_get_subcellular_location_by_accession (from Uniprot Tools)

• UniProt_get_uniparc_entry (from Uniprot Tools)

• UniProt_get_uniref_cluster (from Uniprot Tools)

• UniProt_id_mapping (from Uniprot Tools)

• UniProt_search (from Uniprot Tools)

• UniProt_search_uniparc (from Uniprot Tools)

• UniProt_search_uniref (from Uniprot Tools)

UnpaywallTool (1 tools)

Local Tools:

• Unpaywall_check_oa_status (from Unpaywall Tools)

WHOGHOQueryTool (1 tools)

Local Tools:

• who_gho_query_health_data (from Who Gho Tools)

WHOGHORESTTool (1 tools)

Local Tools:

• who_gho_get_data (from Who Gho Tools)

WHOGuidelineFullTextTool (1 tools)

Local Tools:

• WHO_Guideline_Full_Text (from Unified Guideline Tools)

WHOGuidelinesTool (1 tools)

Local Tools:

• WHO_Guidelines_Search (from Unified Guideline Tools)

WebAPIDocumentationSearchTool (1 tools)

Local Tools:

• web_api_documentation_search (from Web Search Tools)

WebSearchTool (1 tools)

Local Tools:

• web_search (from Web Search Tools)

WikiPathwaysGetTool (1 tools)

Local Tools:

• WikiPathways_get_pathway (from Wikipathways Tools)

WikiPathwaysSearchTool (1 tools)

Local Tools:

• WikiPathways_search (from Wikipathways Tools)

WikidataSPARQLTool (1 tools)

Local Tools:

• Wikidata_SPARQL_query (from Wikidata Sparql Tools)

WikipediaContentTool (1 tools)

Local Tools:

• Wikipedia_get_content (from Wikipedia Tools)

WikipediaSearchTool (1 tools)

Local Tools:

• Wikipedia_search (from Wikipedia Tools)

WikipediaSummaryTool (1 tools)

Local Tools:

• Wikipedia_get_summary (from Wikipedia Tools)

WoRMSRESTTool (1 tools)

Local Tools:

• WoRMS_search_species (from Worms Tools)

XMLTool (19 tools)

Local Tools:

• drugbank_filter_drugs_by_name (from Xml Tools)

• drugbank_get_drug_basic_info_by_drug_name_or_id (from Xml Tools)

• drugbank_get_drug_chemistry_by_drug_name_or_drugbank_id (from Xml Tools)

• drugbank_get_drug_desc_pharmacology_by_moa (from Xml Tools)

• drugbank_get_drug_interactions_by_drug_name_or_id (from Xml Tools)

• drugbank_get_drug_name_and_description_by_indication (from Xml Tools)

• drugbank_get_drug_name_and_description_by_pathway_name (from Xml Tools)

• drugbank_get_drug_name_and_description_by_target_name (from Xml Tools)

• drugbank_get_drug_products_by_name_or_drugbank_id (from Xml Tools)

• drugbank_get_drug_references_by_drug_name_or_id (from Xml Tools)

• drugbank_get_indications_by_drug_name_or_drugbank_id (from Xml Tools)

• drugbank_get_pathways_reactions_by_drug_or_id (from Xml Tools)

• drugbank_get_pharmacology_by_drug_name_or_drugbank_id (from Xml Tools)

• drugbank_get_safety_by_drug_name_or_drugbank_id (from Xml Tools)

• drugbank_get_targets_by_drug_name_or_drugbank_id (from Xml Tools)

• mesh_get_subjects_by_pharmacological_action (from Xml Tools)

• mesh_get_subjects_by_subject_id (from Xml Tools)

• mesh_get_subjects_by_subject_name (from Xml Tools)

• mesh_get_subjects_by_subject_scope_or_definition (from Xml Tools)

ZINCTool (4 tools)

Local Tools:

• ZINC_get_catalogs (from Zinc Tools)

• ZINC_get_substance (from Zinc Tools)

• ZINC_search_by_name (from Zinc Tools)

• ZINC_search_by_smiles (from Zinc Tools)

ZenodoRESTTool (5 tools)

Local Tools:

• Zenodo_get_license (from Zenodo Tools)

• Zenodo_get_record (from Zenodo Tools)

• Zenodo_get_record_files (from Zenodo Tools)

• Zenodo_list_licenses (from Zenodo Tools)

• Zenodo_search_records (from Zenodo Tools)

dbSNPGetFrequencies (1 tools)

Local Tools:

• dbsnp_get_frequencies (from Dbsnp Tools)

dbSNPGetVariantByRsID (1 tools)

Local Tools:

• dbsnp_get_variant_by_rsid (from Dbsnp Tools)

dbSNPSearchByGene (1 tools)

Local Tools:

• dbsnp_search_by_gene (from Dbsnp Tools)

gnomADGetGeneConstraints (1 tools)

Local Tools:

• gnomad_get_gene_constraints (from Gnomad Tools)

gnomADGraphQLQueryTool (6 tools)

Local Tools:

• gnomad_get_gene (from Gnomad Tools)

• gnomad_get_region (from Gnomad Tools)

• gnomad_get_transcript (from Gnomad Tools)

• gnomad_get_variant (from Gnomad Tools)

• gnomad_search_genes (from Gnomad Tools)

• gnomad_search_variants (from Gnomad Tools)

Quick Tool Search

Use your browser’s search function (Ctrl+F / Cmd+F) to quickly find:

• Tool Name: Search for the exact tool name

• File Path: Search for filename.json to find all tools in that file

• Tool Type: Search for specific tool types like “AgenticTool”, “OpenTarget”, etc.

Note

Each configuration file has its own dedicated page with detailed tool information and collapsible sections.