Available Tools

ToolUniverse provides over 600 scientific tools organized into local and remote categories. This overview helps you discover and navigate the available tools for your research needs.

Tool Registry

Local Tools

Local tools are Python classes that run within the ToolUniverse process, providing high performance and seamless integration.

Key Features: - High performance with no network overhead - Automatic discovery and registration - Full access to ToolUniverse features - Easy development and testing

Remote Tools

Remote tools integrate external services, APIs, and specialized systems running on different servers.

Key Features: - Integration with external APIs and services - Scalable computation offloading - Support for different programming languages - Secure isolation of sensitive operations

Tip

Discover Available Tools:

• Tool Listing Tutorial - Browse tools by category and explore the full catalog

• Tool Finder Tutorial - Learn advanced search techniques and filters

• Remote Tools Setup - Set up remote tool integrations

• Tool Loading Tutorial - Load and configure local tools

Overview

• Total Configuration Files: 430

• Total Tools: 2000

Local Tools

Note

Tools running within the ToolUniverse process

Packages Tools

• Bioinformatics Core Tools

• Cheminformatics Tools

• Earth Sciences Tools

• Genomics Tools

• Image Processing Tools

• Machine Learning Tools

• Neuroscience Tools

• Physics Astronomy Tools

• Scientific Computing Tools

• Single Cell Tools

• Structural Biology Tools

• Visualization Tools

Builtin Tools

• Ada Aha Nccn Tools

• Admetai Tools

• Adverse Event Tools

• Agentic Tools

• Allen Brain Tools

• Alliance Genome Tools

• Alphafold Tools

• Alphamissense Tools

• Anaconda Tools

• Arrayexpress Tools

• Artic Tools

• Arxiv Tools

• Bgee Tools

• Bigg Models Tools

• Bindingdb Tools

• Bioconductor Tools

• Biogrid Tools

• Bioimage Archive Tools

• Biomodels Tools

• Bioportal Tools

• Biorxiv Ext Tools

• Biorxiv Tools

• Biosamples Tools

• Biostudies Tools

• Biothings Tools

• Biotools Registry Tools

• Blast Tools

• Bmrb Tools

• Boltz Mcp Loader Tools

• Brenda Tools

• Bvbrc Tools

• Cadd Tools

• Cath Tools

• Cbioportal Tools

• Cdc Tools

• Ceda Tools

• Cellosaurus Tools

• Cellpainting Tools

• Cellxgene Census Tools

• Cellxgene Discovery Tools

• Channelsdb Tools

• Chebi Tools

• Chem Compute Tools

• Chembl Tools

• Chipatlas Tools

• Civic Tools

• Clingen Ar Tools

• Clingen Dosage Api Tools

• Clingen Tools

• Clinical Guidelines Tools

• Clinicaltrials Gov Tools

• Clinvar Tools

• Clue Tools

• Cod Crystal Tools

• Col Tools

• Compact Mode Tools

• Complex Portal Tools

• Compose Tools

• Core Tools

• Cosmic Tools

• Cpic Tools

• Cran Tools

• Crossref Tools

• Ctd Tools

• Dailymed Tools

• Datacite Tools

• Dataone Tools

• Dataset Tools

• Dataverse Tools

• Dbfetch Tools

• Dblp Tools

• Dbpedia Tools

• Dbsnp Tools

• Deepgo Tools

• Depmap Tools

• Dfam Tools

• Dgidb Tools

• Disease Ontology Tools

• Disease Sh Ext Tools

• Disease Target Score Tools

• Diseasesh Tools

• Disgenet Tools

• Disprot Tools

• Dna Tools

• Doaj Tools

• Dose Response Tools

• Drug Discovery Agents

• Drug Synergy Tools

• Dryad Tools

• Ebi Proteins Coordinates Tools

• Ebi Proteins Epitope Tools

• Ebi Proteins Ext Tools

• Ebi Proteins Features Tools

• Ebi Proteins Interactions Tools

• Ebi Search Tools

• Ebi Taxonomy Tools

• Ebird Taxonomy Tools

• Efo Tools

• Elixir Tess Tools

• Embedding Tools

• Emdb Tools

• Emolecules Tools

• Ena Browser Tools

• Ena Portal Tools

• Enamine Tools

• Encode Tools

• Enrichr Tools

• Ensembl Archive Tools

• Ensembl Compara Tools

• Ensembl Info Tools

• Ensembl Ld Tools

• Ensembl Map Tools

• Ensembl Overlap Tools

• Ensembl Phenotype Tools

• Ensembl Regulation Tools

• Ensembl Sequence Tools

• Ensembl Tools

• Ensembl Variation Ext Tools

• Ensembl Vep Tools

• Ensembl Xrefs Tools

• Eol Tools

• Epigenomics Tools

• Epigraphdb Tools

• Eqtl Tools

• Erddap Tools

• Euhealth Tools

• Europe Pmc Tools

• Europepmc Annotations Tools

• Europepmc Citations Tools

• Eurostat Tools

• Eva Tools

• Eve Tools

• Expert Feedback Tools

• Expression Atlas Tools

• Faers Analytics Tools

• Fatcat Tools

• Fda Drug Adverse Event Detail Tools

• Fda Drug Adverse Event Tools

• Fda Drug Labeling Tools

• Fda Orange Book Tools

• Fda Pharmacogenomic Biomarkers Tools

• Figshare Tools

• File Download Tools

• Finder Tools

• Flybase Tools

• Flymine Tools

• Fooddata Central Tools

• Fourdn Tools

• Fpbase Tools

• Gbif Ext Tools

• Gbif Tools

• Gdc Tools

• Gene2Phenotype Tools

• Gene Ontology Tools

• Genenetwork Ext Tools

• Genenetwork Tools

• Genome Nexus Tools

• Geo Tools

• Github Tools

• Glygen Tools

• Gnomad Tools

• Gnps Tools

• Go Api Tools

• Gpcrdb Tools

• Gprofiler Tools

• Gtex Tools

• Gtex V2 Tools

• Gtopdb Tools

• Gwas Tools

• Gxa Tools

• Hal Tools

• Harmonizome Tools

• Hca Tools

• Health Disparities Tools

• Hgnc Tools

• Hmdb Tools

• Hpa Tools

• Hpo Tools

• Huggingface Tools

• Humanbase Tools

• Humanmine Tools

• Icd Tools

• Icite Tools

• Identifiers Org Tools

• Idigbio Tools

• Idmap Tools

• Idr Tools

• Iedb Tools

• Imgt Tools

• Impc Tools

• Inaturalist Tools

• Inspirehep Tools

• Intact Tools

• Interpro Domain Arch Tools

• Interpro Entry Tools

• Interpro Ext Tools

• Interpro Tools

• Interproscan Tools

• Itis Tools

• Jaspar Tools

• Jpl Horizons Tools

• Kegg Brite Tools

• Kegg Ext Tools

• Kegg Tools

• Klifs Tools

• L1000Fwd Tools

• Lipidmaps Tools

• Literature Search Tools

• Litvar Tools

• Lncrna Tools

• Loinc Tools

• Lotus Tools

• Marine Regions Tools

• Markitdown Tools

• Massbank Tools

• Mcp Auto Loader Esm

• Medlineplus Tools

• Medrxiv Tools

• Mesh Tools

• Metabolights Tools

• Metabolomics Workbench Tools

• Metacyc Tools

• Metnorway Tools

• Mgnify Expanded Tools

• Mgnify Tools

• Mibig Tools

• Mirna Tools

• Mobidb Tools

• Modeldb Tools

• Molecule 2D Tools

• Molecule 3D Tools

• Monarch Tools

• Monarch V3 Tools

• Mousemine Tools

• Mpd Tools

• Msigdb Tools

• Mydisease Tools

• Nasa Cmr Tools

• Nasa Donki Tools

• Nasa Eonet Tools

• Nasa Exoplanet Tools

• Nasa Ned Tools

• Nasa Sbdb Tools

• Ncbi Datasets Tools

• Ncbi Gene Tools

• Ncbi Nucleotide Tools

• Ncbi Sra Tools

• Nci Drugdict Tools

• Nci Thesaurus Tools

• Ndex Tools

• Neuromorpho Tools

• Neurovault Tools

• Nextstrain Tools

• Nhanes Tools

• Nominatim Tools

• Nvidia Nim Tools

• Nws Tools

• Obis Tools

• Odphp Tools

• Ols Tools

• Oma Tools

• Omicsdi Tools

• Omim Tools

• Omnipath Tools

• Oncokb Tools

• Open Meteo Airquality Tools

• Open Meteo Climate Tools

• Open Meteo Flood Tools

• Open Meteo Marine Tools

• Open Meteo Tools

• Openaire Tools

• Openalex Tools

• Opencitations Tools

• Openfda Label Tools

• Openfda Tools

• Openfoodfacts Tools

• Openml Tools

• Openneuro Tools

• Opentarget Genetics Tools

• Opentarget Tools

• Opentopodata Tools

• Opentree Tools

• Optimizer Tools

• Orcid Tools

• Orphanet Tools

• Orthodb Tools

• Osf Preprints Tools

• Output Summarization Tools

• Oxo Tools

• Package Discovery Tools

• Paleobiology Tools

• Panelapp Tools

• Panther Tools

• Pathway Commons Tools

• Pdb Redo Tools

• Pdbe Api Tools

• Pdbe Compound Tools

• Pdbe Graph Tools

• Pdbe Kb Tools

• Pdbe Ligands Tools

• Pdbe Search Tools

• Pdbe Sifts Tools

• Pdbe Validation Tools

• Pfam Tools

• Pharmgkb Tools

• Pharmvar Tools

• Pharos Tools

• Plant Reactome Tools

• Pmc Tools

• Pombase Tools

• Powo Tools

• Ppi Tools

• Pride Tools

• Protacdb Tools

• Protein Structure 3D Tools

• Proteins Api Tools

• Proteinsplus Tools

• Proteomexchange Tools

• Pubchem Bioassay Tools

• Pubchem Tools

• Pubchem Tox Tools

• Pubmed Tools

• Pubtator3 Ext Tools

• Pubtator Tools

• Pypi Package Inspector Tools

• Python Executor Tools

• Quickgo Tools

• Rcsb Advanced Search Tools

• Rcsb Chemcomp Tools

• Rcsb Data Tools

• Rcsb Graphql Tools

• Rcsb Pdb Tools

• Rcsb Search Tools

• Reactome Analysis Tools

• Reactome Content Tools

• Reactome Interactors Tools

• Reactome Tools

• Regulomedb Tools

• Remap Tools

• Rfam Tools

• Rhea Tools

• Rnacentral Tools

• Ror Tools

• Rxnorm Tools

• Sabdab Tools

• Sasbdb Tools

• Scanprosite Tools

• Scite Tools

• Screen Tools

• Sdss Tools

• Semantic Scholar Ext Tools

• Semantic Scholar Tools

• Sgd Tools

• Simbad Tools

• Smolagent Tools

• Soilgrids Tools

• Special Tools

• Spliceai Tools

• Stitch Tools

• String Ext Tools

• String Network Tools

• Sunrise Sunset Tools

• Survival Tools

• Swissdock Tools

• Swissmodel Tools

• Synbiohub Tools

• Targetmine Tools

• Tcia Tools

• Therasabdab Tools

• Three D Beacons Tools

• Timer Tools

• Tool Composition Tools

• Tool Discovery Agents

• Txagent Client Tools

• Ucsc Genome Tools

• Umls Tools

• Unichem Tools

• Unified Guideline Tools

• Uniparc Tools

• Uniprot Idmapping Tools

• Uniprot Locations Tools

• Uniprot Proteomes Tools

• Uniprot Ref Tools

• Uniprot Taxonomy Tools

• Uniprot Tools

• Uniref Tools

• Unpaywall Tools

• Url Fetch Tools

• Uscensus Tools

• Usgs Earthquake Tools

• Usgs Water Tools

• Uspto Downloader Tools

• Uspto Tools

• Variant Validator Tools

• Veupathdb Tools

• Waqi Tools

• Web Search Tools

• Wfgy Promptbundle Tools

• Who Gho Tools

• Wikidata Entity Tools

• Wikidata Sparql Tools

• Wikipathways Ext Tools

• Wikipathways Tools

• Wikipedia Ext Tools

• Wikipedia Tools

• Worldbank Tools

• Wormbase Tools

• Worms Tools

• Xml Tools

• Zenodo Tools

• Zfin Tools

Remote Tools

Note

Tools registered in with remote registry

---

• Boltz Tools
• Depmap Tools
• Expert Feedback Tools
• Immune Compass Tools
• Pinnacle Tools
• Transcriptformer Tools
• Uspto Downloader Tools

Tools by Type

ADAStandardsTool (3 tools)

Local Tools:

• ADA_get_standards_section (from Ada Aha Nccn Tools)

• ADA_list_standards_sections (from Ada Aha Nccn Tools)

• ADA_search_standards (from Ada Aha Nccn Tools)

ADMETAITool (9 tools)

Local Tools:

• ADMETAI_predict_BBB_penetrance (from Admetai Tools)

• ADMETAI_predict_CYP_interactions (from Admetai Tools)

• ADMETAI_predict_bioavailability (from Admetai Tools)

• ADMETAI_predict_clearance_distribution (from Admetai Tools)

• ADMETAI_predict_nuclear_receptor_activity (from Admetai Tools)

• ADMETAI_predict_physicochemical_properties (from Admetai Tools)

• ADMETAI_predict_solubility_lipophilicity_hydration (from Admetai Tools)

• ADMETAI_predict_stress_response (from Admetai Tools)

• ADMETAI_predict_toxicity (from Admetai Tools)

AHAACCGuidelineTool (4 tools)

Local Tools:

• ACC_list_guidelines (from Ada Aha Nccn Tools)

• AHA_ACC_get_guideline (from Ada Aha Nccn Tools)

• AHA_ACC_search_guidelines (from Ada Aha Nccn Tools)

• AHA_list_guidelines (from Ada Aha Nccn Tools)

AgenticTool (50 tools)

Local Tools:

• ADMETAnalyzerAgent (from Drug Discovery Agents)

• AdvancedCodeQualityAnalyzer (from Agentic Tools)

• AdverseEventICDMapper (from Adverse Event Tools)

• AdverseEventPredictionQuestionGenerator (from Adverse Event Tools)

• AdverseEventPredictionQuestionGeneratorWithContext (from Adverse Event Tools)

• ArgumentDescriptionOptimizer (from Optimizer Tools)

• ClinicalTrialDesignAgent (from Drug Discovery Agents)

• CodeQualityAnalyzer (from Tool Discovery Agents)

• CompoundDiscoveryAgent (from Drug Discovery Agents)

• DataAnalysisValidityReviewer (from Agentic Tools)

• DescriptionAnalyzer (from Optimizer Tools)

• DescriptionQualityEvaluator (from Optimizer Tools)

• DiseaseAnalyzerAgent (from Drug Discovery Agents)

• DomainExpertValidator (from Agentic Tools)

• DrugInteractionAnalyzerAgent (from Drug Discovery Agents)

• DrugOptimizationAgent (from Drug Discovery Agents)

• EthicalComplianceReviewer (from Agentic Tools)

• ExperimentalDesignScorer (from Agentic Tools)

• HypothesisGenerator (from Agentic Tools)

• IntentAnalyzerAgent (from Literature Search Tools)

• KeywordExtractorAgent (from Literature Search Tools)

• LabelGenerator (from Agentic Tools)

• LiteratureContextReviewer (from Agentic Tools)

• LiteratureSynthesisAgent (from Drug Discovery Agents)

• MedicalLiteratureReviewer (from Agentic Tools)

• MedicalTermNormalizer (from Agentic Tools)

• MethodologyRigorReviewer (from Agentic Tools)

• NoveltySignificanceReviewer (from Agentic Tools)

• OverallSummaryAgent (from Literature Search Tools)

• PackageAnalyzer (from Tool Discovery Agents)

• ProtocolOptimizer (from Agentic Tools)

• QualityCheckerAgent (from Literature Search Tools)

• QuestionRephraser (from Agentic Tools)

• ReferenceInfoAnalyzer (from Tool Discovery Agents)

• ReproducibilityTransparencyReviewer (from Agentic Tools)

• ResultSummarizerAgent (from Literature Search Tools)

• ResultsInterpretationReviewer (from Agentic Tools)

• ScientificTextSummarizer (from Agentic Tools)

• TestCaseGenerator (from Optimizer Tools)

• TestResultsAnalyzer (from Tool Discovery Agents)

• ToolCompatibilityAnalyzer (from Tool Composition Tools)

• ToolMetadataGenerator (from Agentic Tools)

• ToolMetadataStandardizer (from Agentic Tools)

• ToolOutputSummarizer (from Output Summarization Tools)

• ToolQualityEvaluator (from Agentic Tools)

• ToolRelationshipDetector (from Agentic Tools)

• UnifiedToolGenerator (from Tool Discovery Agents)

• WritingPresentationReviewer (from Agentic Tools)

• XMLToolOptimizer (from Tool Discovery Agents)

• call_agentic_human (from Agentic Tools)

AllenBrainTool (4 tools)

Local Tools:

• AllenBrain_get_expression_datasets (from Allen Brain Tools)

• AllenBrain_get_structure (from Allen Brain Tools)

• AllenBrain_search_genes (from Allen Brain Tools)

• AllenBrain_search_structures (from Allen Brain Tools)

AllianceGenomeTool (17 tools)

Local Tools:

• Alliance_get_disease (from Alliance Genome Tools)

• Alliance_get_disease_genes (from Alliance Genome Tools)

• Alliance_get_gene (from Alliance Genome Tools)

• Alliance_get_gene_phenotypes (from Alliance Genome Tools)

• Alliance_search_genes (from Alliance Genome Tools)

• FlyBase_get_gene (from Flybase Tools)

• FlyBase_get_gene_alleles (from Flybase Tools)

• FlyBase_get_gene_disease_models (from Flybase Tools)

• FlyBase_get_gene_expression (from Flybase Tools)

• FlyBase_get_gene_interactions (from Flybase Tools)

• FlyBase_get_gene_orthologs (from Flybase Tools)

• ZFIN_get_allele (from Zfin Tools)

• ZFIN_get_gene (from Zfin Tools)

• ZFIN_get_gene_alleles (from Zfin Tools)

• ZFIN_get_gene_expression (from Zfin Tools)

• ZFIN_get_gene_orthologs (from Zfin Tools)

• ZFIN_get_gene_phenotypes (from Zfin Tools)

AlphaFoldRESTTool (3 tools)

Local Tools:

• alphafold_get_annotations (from Alphafold Tools)

• alphafold_get_prediction (from Alphafold Tools)

• alphafold_get_summary (from Alphafold Tools)

AlphaMissenseTool (3 tools)

Local Tools:

• AlphaMissense_get_protein_scores (from Alphamissense Tools)

• AlphaMissense_get_residue_scores (from Alphamissense Tools)

• AlphaMissense_get_variant_score (from Alphamissense Tools)

ArXivPDFSnippetsTool (1 tools)

Local Tools:

• ArXiv_get_pdf_snippets (from Arxiv Tools)

ArXivTool (1 tools)

Local Tools:

• ArXiv_search_papers (from Arxiv Tools)

ArrayExpressRESTTool (4 tools)

Local Tools:

• arrayexpress_get_experiment (from Arrayexpress Tools)

• arrayexpress_get_experiment_files (from Arrayexpress Tools)

• arrayexpress_get_experiment_samples (from Arrayexpress Tools)

• arrayexpress_search_experiments (from Arrayexpress Tools)

BRENDATool (4 tools)

Local Tools:

• BRENDA_get_enzyme_info (from Brenda Tools)

• BRENDA_get_inhibitors (from Brenda Tools)

• BRENDA_get_kcat (from Brenda Tools)

• BRENDA_get_km (from Brenda Tools)

BVBRCTool (13 tools)

Local Tools:

• BVBRC_get_genome (from Bvbrc Tools)

• BVBRC_get_protein_structure (from Bvbrc Tools)

• BVBRC_get_taxonomy (from Bvbrc Tools)

• BVBRC_search_amr (from Bvbrc Tools)

• BVBRC_search_epitopes (from Bvbrc Tools)

• BVBRC_search_genome_features (from Bvbrc Tools)

• BVBRC_search_genomes (from Bvbrc Tools)

• BVBRC_search_pathways (from Bvbrc Tools)

• BVBRC_search_protein_structures (from Bvbrc Tools)

• BVBRC_search_specialty_genes (from Bvbrc Tools)

• BVBRC_search_subsystems (from Bvbrc Tools)

• BVBRC_search_surveillance (from Bvbrc Tools)

• BVBRC_search_taxonomy (from Bvbrc Tools)

BaseRESTTool (254 tools)

Local Tools:

• Anaconda_get_package (from Anaconda Tools)

• Anaconda_search_packages (from Anaconda Tools)

• ArtIC_get_artwork (from Artic Tools)

• ArtIC_search_artworks (from Artic Tools)

• BMRB_get_entries_by_pdb_id (from Bmrb Tools)

• BMRB_get_entries_by_uniprot (from Bmrb Tools)

• BMRB_get_entry (from Bmrb Tools)

• BMRB_get_entry_citation (from Bmrb Tools)

• BMRB_search_by_keyword (from Bmrb Tools)

• BioRxiv_list_recent_preprints (from Biorxiv Ext Tools)

• BioTools_get_tool (from Biotools Registry Tools)

• BioTools_search (from Biotools Registry Tools)

• BioTools_search_by_operation (from Biotools Registry Tools)

• BioTools_search_by_topic (from Biotools Registry Tools)

• BioTools_search_by_type (from Biotools Registry Tools)

• Bioconductor_get_package (from Bioconductor Tools)

• Bioconductor_search_packages (from Bioconductor Tools)

• CEDA_search_datasets (from Ceda Tools)

• COD_get_structure (from Cod Crystal Tools)

• COD_search_structures (from Cod Crystal Tools)

• CPIC_get_alleles (from Cpic Tools)

• CPIC_get_drug_info (from Cpic Tools)

• CPIC_get_gene_drug_pairs (from Cpic Tools)

• CPIC_get_gene_info (from Cpic Tools)

• CPIC_get_recommendations (from Cpic Tools)

• CPIC_list_drugs (from Cpic Tools)

• CPIC_list_guidelines (from Cpic Tools)

• CPIC_list_pgx_genes (from Cpic Tools)

• CPIC_search_gene_drug_pairs (from Cpic Tools)

• CRAN_get_package (from Cran Tools)

• CRAN_get_package_versions (from Cran Tools)

• ChannelsDB_get_channels_cofactor (from Channelsdb Tools)

• ChannelsDB_get_channels_pdb (from Channelsdb Tools)

• CoL_get_children (from Col Tools)

• CoL_get_taxon (from Col Tools)

• CoL_search_species (from Col Tools)

• DailyMed_search_drug_classes (from Clinical Guidelines Tools)

• DataCite_get_doi (from Datacite Tools)

• DataCite_search_dois (from Datacite Tools)

• DataONE_search_datasets (from Dataone Tools)

• Dataverse_get_dataset (from Dataverse Tools)

• Dataverse_search_datasets (from Dataverse Tools)

• DiseaseSH_get_covid_historical (from Disease Sh Ext Tools)

• DiseaseSH_get_vaccine_coverage (from Disease Sh Ext Tools)

• DiseaseSh_get_country_stats (from Diseasesh Tools)

• DiseaseSh_get_global_stats (from Diseasesh Tools)

• DiseaseSh_get_historical (from Diseasesh Tools)

• Dryad_get_dataset (from Dryad Tools)

• Dryad_get_dataset_files (from Dryad Tools)

• Dryad_search_datasets (from Dryad Tools)

• ELIXIRTeSS_search_events (from Elixir Tess Tools)

• ELIXIRTeSS_search_materials (from Elixir Tess Tools)

• EPMC_get_citations (from Europepmc Citations Tools)

• EPMC_get_references (from Europepmc Citations Tools)

• ERDDAP_get_dataset_info (from Erddap Tools)

• ERDDAP_search_datasets (from Erddap Tools)

• EVA_get_variants_by_gene (from Eva Tools)

• EVA_get_variants_by_region (from Eva Tools)

• EVA_list_studies (from Eva Tools)

• Eurostat_get_dataset (from Eurostat Tools)

• FPbase_get_protein (from Fpbase Tools)

• FPbase_search_by_spectrum (from Fpbase Tools)

• Figshare_get_article (from Figshare Tools)

• Figshare_search_articles (from Figshare Tools)

• FlyMine_search (from Flymine Tools)

• FlyMine_search_genes (from Flymine Tools)

• G2P_get_gene (from Gene2Phenotype Tools)

• G2P_get_panel (from Gene2Phenotype Tools)

• G2P_get_record (from Gene2Phenotype Tools)

• G2P_search (from Gene2Phenotype Tools)

• GBIF_get_species (from Gbif Ext Tools)

• GBIF_suggest_species (from Gbif Ext Tools)

• GeneNetwork_get_dataset_info (from Genenetwork Ext Tools)

• GeneNetwork_get_sample_data (from Genenetwork Tools)

• GeneNetwork_get_trait_info (from Genenetwork Ext Tools)

• GeneNetwork_list_datasets (from Genenetwork Tools)

• GeneNetwork_list_groups (from Genenetwork Tools)

• GeneNetwork_list_species (from Genenetwork Tools)

• GitHub_get_repository (from Github Tools)

• GitHub_get_user_profile (from Github Tools)

• GitHub_search_repositories (from Github Tools)

• GtoPdb_get_interactions (from Gtopdb Tools)

• GtoPdb_search_ligands (from Gtopdb Tools)

• GtoPdb_search_targets (from Gtopdb Tools)

• HuggingFace_get_model (from Huggingface Tools)

• HuggingFace_search_datasets (from Huggingface Tools)

• HuggingFace_search_models (from Huggingface Tools)

• HumanMine_search (from Humanmine Tools)

• HumanMine_search_genes (from Humanmine Tools)

• HumanMine_search_pathways (from Humanmine Tools)

• IDR_get_study (from Idr Tools)

• IDR_get_study_datasets (from Idr Tools)

• IDR_list_studies (from Idr Tools)

• IdentifiersOrg_get_namespace (from Identifiers Org Tools)

• IdentifiersOrg_list_namespaces (from Identifiers Org Tools)

• IdentifiersOrg_resolve (from Identifiers Org Tools)

• IdentifiersOrg_search_namespaces (from Identifiers Org Tools)

• InspireHEP_search_papers (from Inspirehep Tools)

• JPLHorizons_get_body_data (from Jpl Horizons Tools)

• JPLHorizons_lookup_object (from Jpl Horizons Tools)

• KLIFS_get_kinase (from Klifs Tools)

• KLIFS_get_ligands (from Klifs Tools)

• KLIFS_get_structures (from Klifs Tools)

• KLIFS_get_structures_by_pdb (from Klifs Tools)

• KLIFS_list_kinases (from Klifs Tools)

• LOTUS_get_compound (from Lotus Tools)

• LOTUS_search_by_inchikey (from Lotus Tools)

• LOTUS_search_natural_products (from Lotus Tools)

• LitVar_get_variant_publications (from Litvar Tools)

• LitVar_search_variants (from Litvar Tools)

• MAGICapp_get_guideline (from Clinical Guidelines Tools)

• MAGICapp_get_recommendations (from Clinical Guidelines Tools)

• MAGICapp_get_sections (from Clinical Guidelines Tools)

• MAGICapp_list_guidelines (from Clinical Guidelines Tools)

• MIBiG_get_stats (from Mibig Tools)

• MIBiG_list_clusters (from Mibig Tools)

• MSigDB_get_geneset (from Msigdb Tools)

• MSigDB_get_hallmark_geneset (from Msigdb Tools)

• MarineRegions_get_record (from Marine Regions Tools)

• MarineRegions_search_by_name (from Marine Regions Tools)

• MassBank_search_by_compound (from Massbank Tools)

• MassBank_search_by_formula (from Massbank Tools)

• MetNorway_get_forecast (from Metnorway Tools)

• ModelDB_get_celltype (from Modeldb Tools)

• ModelDB_get_model (from Modeldb Tools)

• ModelDB_get_paper (from Modeldb Tools)

• ModelDB_list_celltypes (from Modeldb Tools)

• ModelDB_list_models (from Modeldb Tools)

• MouseMine_search (from Mousemine Tools)

• MouseMine_search_alleles (from Mousemine Tools)

• MouseMine_search_genes (from Mousemine Tools)

• NASACMR_search_collections (from Nasa Cmr Tools)

• NASACMR_search_granules (from Nasa Cmr Tools)

• NASAEONET_get_categories (from Nasa Eonet Tools)

• NASAEONET_get_events (from Nasa Eonet Tools)

• NASAExoplanet_query_planets (from Nasa Exoplanet Tools)

• NASAExoplanet_query_stars (from Nasa Exoplanet Tools)

• NASANED_lookup_object (from Nasa Ned Tools)

• NASASBDB_close_approaches (from Nasa Sbdb Tools)

• NASASBDB_get_body (from Nasa Sbdb Tools)

• NASA_DONKI_get_coronal_mass_ejections (from Nasa Donki Tools)

• NASA_DONKI_get_geomagnetic_storms (from Nasa Donki Tools)

• NASA_DONKI_get_high_speed_streams (from Nasa Donki Tools)

• NASA_DONKI_get_interplanetary_shocks (from Nasa Donki Tools)

• NASA_DONKI_get_solar_energetic_particles (from Nasa Donki Tools)

• NASA_DONKI_get_solar_flares (from Nasa Donki Tools)

• NCBIGene_get_summary (from Ncbi Gene Tools)

• NCBIGene_search (from Ncbi Gene Tools)

• NCBIProtein_get_summary (from Ncbi Gene Tools)

• NCIDrugDict_get_drug (from Nci Drugdict Tools)

• NCIDrugDict_search (from Nci Drugdict Tools)

• NCI_expand_drugs_by_letter (from Clinical Guidelines Tools)

• NCI_get_drug_by_name (from Clinical Guidelines Tools)

• NCI_search_cancer_resources (from Clinical Guidelines Tools)

• NWS_get_active_alerts (from Nws Tools)

• NWS_get_forecast (from Nws Tools)

• NWS_get_point_metadata (from Nws Tools)

• NeuroVault_get_collection (from Neurovault Tools)

• NeuroVault_get_image (from Neurovault Tools)

• NeuroVault_list_collection_images (from Neurovault Tools)

• NeuroVault_list_collections (from Neurovault Tools)

• Nominatim_geocode (from Nominatim Tools)

• Nominatim_reverse_geocode (from Nominatim Tools)

• OmicsDI_get_dataset (from Omicsdi Tools)

• OmicsDI_get_statistics (from Omicsdi Tools)

• OmicsDI_search_datasets (from Omicsdi Tools)

• OpenCitations_get_citation_count (from Opencitations Tools)

• OpenCitations_get_citations (from Opencitations Tools)

• OpenCitations_get_references (from Opencitations Tools)

• OpenFDA_search_device_510k (from Openfda Tools)

• OpenFDA_search_device_enforcement (from Openfda Tools)

• OpenFDA_search_drug_enforcement (from Openfda Tools)

• OpenFDA_search_drug_events (from Openfda Tools)

• OpenFDA_search_drug_labels (from Openfda Tools)

• OpenFDA_search_drug_ndc (from Openfda Tools)

• OpenFDA_search_food_enforcement (from Openfda Tools)

• OpenFoodFacts_get_product (from Openfoodfacts Tools)

• OpenFoodFacts_search_products (from Openfoodfacts Tools)

• OpenML_get_dataset (from Openml Tools)

• OpenML_search_datasets (from Openml Tools)

• OpenMeteo_geocode_location (from Open Meteo Tools)

• OpenMeteo_get_air_quality (from Open Meteo Tools)

• OpenMeteo_get_air_quality (from Open Meteo Airquality Tools)

• OpenMeteo_get_flood_forecast (from Open Meteo Flood Tools)

• OpenMeteo_get_historical_climate (from Open Meteo Climate Tools)

• OpenMeteo_get_historical_weather (from Open Meteo Tools)

• OpenMeteo_get_marine_forecast (from Open Meteo Marine Tools)

• OpenMeteo_get_weather_forecast (from Open Meteo Tools)

• OpenTopoData_get_elevation (from Opentopodata Tools)

• PDB_REDO_get_structure_quality (from Pdb Redo Tools)

• PDBe_get_bound_molecules (from Pdbe Graph Tools)

• PDBe_get_compound_details (from Pdbe Graph Tools)

• PDBe_get_funpdbe_annotations (from Pdbe Graph Tools)

• PDBe_get_uniprot_mappings (from Pdbe Graph Tools)

• PDBe_get_uniprot_structure_coverage (from Pdbe Graph Tools)

• POWO_get_taxon (from Powo Tools)

• POWO_search_plants (from Powo Tools)

• PanelApp_get_panel (from Panelapp Tools)

• PanelApp_search_genes (from Panelapp Tools)

• PanelApp_search_panels (from Panelapp Tools)

• PharmVar_get_alleles (from Pharmvar Tools)

• PharmVar_list_genes (from Pharmvar Tools)

• PubTator3_get_annotations (from Pubtator3 Ext Tools)

• RCSB_get_chemical_component (from Rcsb Chemcomp Tools)

• ROR_get_organization (from Ror Tools)

• ROR_search_organizations (from Ror Tools)

• SDSS_sql_search (from Sdss Tools)

• STRING_get_interaction_partners (from String Network Tools)

• STRING_get_network (from String Network Tools)

• ScanProsite_scan_protein (from Scanprosite Tools)

• SemanticScholar_get_author (from Semantic Scholar Ext Tools)

• SemanticScholar_get_paper (from Semantic Scholar Ext Tools)

• SemanticScholar_get_recommendations (from Semantic Scholar Ext Tools)

• SemanticScholar_search_authors (from Semantic Scholar Ext Tools)

• SoilGrids_get_properties (from Soilgrids Tools)

• SunriseSunset_get_times (from Sunrise Sunset Tools)

• TCIA_get_body_part_values (from Tcia Tools)

• TCIA_get_modality_values (from Tcia Tools)

• TCIA_get_patient_studies (from Tcia Tools)

• TCIA_get_series (from Tcia Tools)

• TCIA_get_series_metadata (from Tcia Tools)

• TCIA_get_series_size (from Tcia Tools)

• TCIA_list_collections (from Tcia Tools)

• TargetMine_search (from Targetmine Tools)

• TargetMine_search_genes (from Targetmine Tools)

• USCensus_get_population (from Uscensus Tools)

• USGSWater_get_streamflow (from Usgs Water Tools)

• USGSWater_get_water_level (from Usgs Water Tools)

• USGSWater_get_water_temperature (from Usgs Water Tools)

• USGS_get_earthquake_feed (from Usgs Earthquake Tools)

• USGS_query_earthquakes (from Usgs Earthquake Tools)

• UniProt_get_proteome (from Uniprot Proteomes Tools)

• UniProt_search_proteomes (from Uniprot Proteomes Tools)

• VEuPathDB_list_gene_searches (from Veupathdb Tools)

• VEuPathDB_list_organism_searches (from Veupathdb Tools)

• VEuPathDB_list_record_types (from Veupathdb Tools)

• VariantValidator_validate_variant (from Variant Validator Tools)

• WAQI_get_air_quality (from Waqi Tools)

• WHOGHO_get_indicator_data (from Who Gho Tools)

• WHOGHO_search_indicators (from Who Gho Tools)

• Wikidata_get_entity (from Wikidata Entity Tools)

• Wikidata_search_entities (from Wikidata Entity Tools)

• Wikipedia_get_featured_content (from Wikipedia Ext Tools)

• WorldBank_get_country (from Worldbank Tools)

• WorldBank_get_indicator (from Worldbank Tools)

• WorldBank_search_indicators (from Worldbank Tools)

• eBird_get_taxon_groups (from Ebird Taxonomy Tools)

• eBird_get_taxonomy (from Ebird Taxonomy Tools)

• eQTL_get_associations (from Eqtl Tools)

• eQTL_list_datasets (from Eqtl Tools)

• iCite_get_publications (from Icite Tools)

• iCite_search_publications (from Icite Tools)

• iDigBio_search_records (from Idigbio Tools)

• scite_get_tallies (from Scite Tools)

BgeeTool (3 tools)

Local Tools:

• Bgee_get_gene_expression (from Bgee Tools)

• Bgee_list_species (from Bgee Tools)

• Bgee_search_genes (from Bgee Tools)

BiGGModelsTool (7 tools)

Local Tools:

• BiGG_get_database_version (from Bigg Models Tools)

• BiGG_get_metabolite (from Bigg Models Tools)

• BiGG_get_model (from Bigg Models Tools)

• BiGG_get_model_reactions (from Bigg Models Tools)

• BiGG_get_reaction (from Bigg Models Tools)

• BiGG_list_models (from Bigg Models Tools)

• BiGG_search (from Bigg Models Tools)

BinaryDownloadTool (1 tools)

Local Tools:

• download_binary_file (from File Download Tools)

BindingDBTool (4 tools)

Local Tools:

• BindingDB_get_ligands_by_pdb (from Bindingdb Tools)

• BindingDB_get_ligands_by_uniprot (from Bindingdb Tools)

• BindingDB_get_ligands_by_uniprots (from Bindingdb Tools)

• BindingDB_get_targets_by_compound (from Bindingdb Tools)

BioGRIDRESTTool (4 tools)

Local Tools:

• BioGRID_get_chemical_interactions (from Biogrid Tools)

• BioGRID_get_interactions (from Biogrid Tools)

• BioGRID_get_ptms (from Biogrid Tools)

• BioGRID_search_by_pubmed (from Biogrid Tools)

BioImageArchiveTool (3 tools)

Local Tools:

• BioImageArchive_get_study (from Bioimage Archive Tools)

• BioImageArchive_search_bioimages (from Bioimage Archive Tools)

• BioImageArchive_search_studies (from Bioimage Archive Tools)

BioModelsRESTTool (5 tools)

Local Tools:

• BioModels_download_model (from Biomodels Tools)

• BioModels_get_model (from Biomodels Tools)

• BioModels_list_files (from Biomodels Tools)

• BioModels_search_parameters (from Biomodels Tools)

• biomodels_search (from Biomodels Tools)

BioPortalTool (4 tools)

Local Tools:

• BioPortal_annotate_text (from Bioportal Tools)

• BioPortal_get_concept (from Bioportal Tools)

• BioPortal_get_hierarchy (from Bioportal Tools)

• BioPortal_search_ontology_terms (from Bioportal Tools)

BioRxivTool (2 tools)

Local Tools:

• BioRxiv_get_preprint (from Biorxiv Tools)

• MedRxiv_get_preprint (from Medrxiv Tools)

BioSamplesTool (3 tools)

Local Tools:

• BioSamples_get_sample (from Biosamples Tools)

• BioSamples_search (from Biosamples Tools)

• BioSamples_search_by_filter (from Biosamples Tools)

BioStudiesRESTTool (4 tools)

Local Tools:

• biostudies_get_study (from Biostudies Tools)

• biostudies_get_study_files (from Biostudies Tools)

• biostudies_search (from Biostudies Tools)

• biostudies_search_by_collection (from Biostudies Tools)

CADDTool (3 tools)

Local Tools:

• CADD_get_position_scores (from Cadd Tools)

• CADD_get_range_scores (from Cadd Tools)

• CADD_get_variant_score (from Cadd Tools)

CATHTool (2 tools)

Local Tools:

• CATH_get_domain_summary (from Cath Tools)

• CATH_get_superfamily (from Cath Tools)

CBioPortalRESTTool (13 tools)

Local Tools:

• cBioPortal_get_cancer_studies (from Cbioportal Tools)

• cBioPortal_get_cancer_types (from Cbioportal Tools)

• cBioPortal_get_clinical_attributes (from Cbioportal Tools)

• cBioPortal_get_clinical_data (from Cbioportal Tools)

• cBioPortal_get_gene_info (from Cbioportal Tools)

• cBioPortal_get_gene_panel_genes (from Cbioportal Tools)

• cBioPortal_get_gene_panels (from Cbioportal Tools)

• cBioPortal_get_genes (from Cbioportal Tools)

• cBioPortal_get_molecular_profiles (from Cbioportal Tools)

• cBioPortal_get_mutations (from Cbioportal Tools)

• cBioPortal_get_patients (from Cbioportal Tools)

• cBioPortal_get_sample_lists (from Cbioportal Tools)

• cBioPortal_get_samples (from Cbioportal Tools)

CDCRESTTool (2 tools)

Local Tools:

• cdc_data_get_dataset (from Cdc Tools)

• cdc_data_search_datasets (from Cdc Tools)

CELLxGENECensusTool (7 tools)

Local Tools:

• CELLxGENE_download_h5ad (from Cellxgene Census Tools)

• CELLxGENE_get_cell_metadata (from Cellxgene Census Tools)

• CELLxGENE_get_census_versions (from Cellxgene Census Tools)

• CELLxGENE_get_embeddings (from Cellxgene Census Tools)

• CELLxGENE_get_expression_data (from Cellxgene Census Tools)

• CELLxGENE_get_gene_metadata (from Cellxgene Census Tools)

• CELLxGENE_get_presence_matrix (from Cellxgene Census Tools)

CIViCTool (12 tools)

Local Tools:

• civic_get_assertion (from Civic Tools)

• civic_get_evidence_item (from Civic Tools)

• civic_get_molecular_profile (from Civic Tools)

• civic_get_variant (from Civic Tools)

• civic_get_variants_by_gene (from Civic Tools)

• civic_search_assertions (from Civic Tools)

• civic_search_diseases (from Civic Tools)

• civic_search_evidence_items (from Civic Tools)

• civic_search_genes (from Civic Tools)

• civic_search_molecular_profiles (from Civic Tools)

• civic_search_therapies (from Civic Tools)

• civic_search_variants (from Civic Tools)

CMAGuidelinesTool (1 tools)

Local Tools:

• CMA_Guidelines_Search (from Unified Guideline Tools)

COSMICTool (2 tools)

Local Tools:

• COSMIC_get_mutations_by_gene (from Cosmic Tools)

• COSMIC_search_mutations (from Cosmic Tools)

CTDTool (5 tools)

Local Tools:

• CTD_get_chemical_diseases (from Ctd Tools)

• CTD_get_chemical_gene_interactions (from Ctd Tools)

• CTD_get_disease_chemicals (from Ctd Tools)

• CTD_get_gene_chemicals (from Ctd Tools)

• CTD_get_gene_diseases (from Ctd Tools)

CTFPHCListGuidelinesTool (1 tools)

Local Tools:

• CTFPHC_list_guidelines (from Unified Guideline Tools)

CTFPHCSearchGuidelinesTool (1 tools)

Local Tools:

• CTFPHC_search_guidelines (from Unified Guideline Tools)

CellPaintingTool (3 tools)

Local Tools:

• CellPainting_get_screen_plates (from Cellpainting Tools)

• CellPainting_get_well_data (from Cellpainting Tools)

• CellPainting_search_screens (from Cellpainting Tools)

CellosaurusGetCellLineInfoTool (1 tools)

Local Tools:

• cellosaurus_get_cell_line_info (from Cellosaurus Tools)

CellosaurusQueryConverterTool (1 tools)

Local Tools:

• cellosaurus_query_converter (from Cellosaurus Tools)

CellosaurusSearchTool (1 tools)

Local Tools:

• cellosaurus_search_cell_lines (from Cellosaurus Tools)

CellxGeneDiscoveryTool (3 tools)

Local Tools:

• CxGDisc_get_collection (from Cellxgene Discovery Tools)

• CxGDisc_list_collections (from Cellxgene Discovery Tools)

• CxGDisc_search_datasets (from Cellxgene Discovery Tools)

ChEBITool (3 tools)

Local Tools:

• ChEBI_get_compound (from Chebi Tools)

• ChEBI_get_ontology_children (from Chebi Tools)

• ChEBI_search (from Chebi Tools)

ChEMBLRESTTool (28 tools)

Local Tools:

• ChEMBL_get_activity (from Chembl Tools)

• ChEMBL_get_assay (from Chembl Tools)

• ChEMBL_get_assay_activities (from Chembl Tools)

• ChEMBL_get_compound_record (from Chembl Tools)

• ChEMBL_get_compound_record_activities (from Chembl Tools)

• ChEMBL_get_drug (from Chembl Tools)

• ChEMBL_get_drug_mechanisms (from Chembl Tools)

• ChEMBL_get_molecule (from Chembl Tools)

• ChEMBL_get_molecule_image (from Chembl Tools)

• ChEMBL_get_molecule_targets (from Chembl Tools)

• ChEMBL_get_target (from Chembl Tools)

• ChEMBL_get_target_activities (from Chembl Tools)

• ChEMBL_get_target_assays (from Chembl Tools)

• ChEMBL_search_activities (from Chembl Tools)

• ChEMBL_search_assays (from Chembl Tools)

• ChEMBL_search_atc_classification (from Chembl Tools)

• ChEMBL_search_binding_sites (from Chembl Tools)

• ChEMBL_search_cell_lines (from Chembl Tools)

• ChEMBL_search_compound_structural_alerts (from Chembl Tools)

• ChEMBL_search_documents (from Chembl Tools)

• ChEMBL_search_drugs (from Chembl Tools)

• ChEMBL_search_mechanisms (from Chembl Tools)

• ChEMBL_search_molecules (from Chembl Tools)

• ChEMBL_search_protein_classification (from Chembl Tools)

• ChEMBL_search_similarity (from Chembl Tools)

• ChEMBL_search_substructure (from Chembl Tools)

• ChEMBL_search_targets (from Chembl Tools)

• ChEMBL_search_tissue (from Chembl Tools)

ChEMBLTool (1 tools)

Local Tools:

• ChEMBL_search_similar_molecules (from Chembl Tools)

ChIPAtlasTool (4 tools)

Local Tools:

• ChIPAtlas_enrichment_analysis (from Chipatlas Tools)

• ChIPAtlas_get_experiments (from Chipatlas Tools)

• ChIPAtlas_get_peak_data (from Chipatlas Tools)

• ChIPAtlas_search_datasets (from Chipatlas Tools)

ChemComputeTool (1 tools)

Local Tools:

• Chem_sa_score (from Chem Compute Tools)

ClinGenARTool (2 tools)

Local Tools:

• ClinGenAR_get_external_records (from Clingen Ar Tools)

• ClinGenAR_lookup_allele (from Clingen Ar Tools)

ClinGenDosageTool (2 tools)

Local Tools:

• ClinGen_dosage_by_gene (from Clingen Dosage Api Tools)

• ClinGen_dosage_region_search (from Clingen Dosage Api Tools)

ClinGenTool (8 tools)

Local Tools:

• ClinGen_get_actionability_adult (from Clingen Tools)

• ClinGen_get_actionability_pediatric (from Clingen Tools)

• ClinGen_get_dosage_sensitivity (from Clingen Tools)

• ClinGen_get_gene_validity (from Clingen Tools)

• ClinGen_get_variant_classifications (from Clingen Tools)

• ClinGen_search_actionability (from Clingen Tools)

• ClinGen_search_dosage_sensitivity (from Clingen Tools)

• ClinGen_search_gene_validity (from Clingen Tools)

ClinVarGetClinicalSignificance (1 tools)

Local Tools:

• clinvar_get_clinical_significance (from Clinvar Tools)

ClinVarGetVariantDetails (1 tools)

Local Tools:

• clinvar_get_variant_details (from Clinvar Tools)

ClinVarSearchVariants (1 tools)

Local Tools:

• clinvar_search_variants (from Clinvar Tools)

ClinicalTrialsDetailsTool (9 tools)

Local Tools:

• extract_clinical_trial_adverse_events (from Clinicaltrials Gov Tools)

• extract_clinical_trial_outcomes (from Clinicaltrials Gov Tools)

• get_clinical_trial_conditions_and_interventions (from Clinicaltrials Gov Tools)

• get_clinical_trial_descriptions (from Clinicaltrials Gov Tools)

• get_clinical_trial_eligibility_criteria (from Clinicaltrials Gov Tools)

• get_clinical_trial_locations (from Clinicaltrials Gov Tools)

• get_clinical_trial_outcome_measures (from Clinicaltrials Gov Tools)

• get_clinical_trial_references (from Clinicaltrials Gov Tools)

• get_clinical_trial_status_and_dates (from Clinicaltrials Gov Tools)

ClinicalTrialsSearchTool (1 tools)

Local Tools:

• search_clinical_trials (from Clinicaltrials Gov Tools)

ClinicalTrialsTool (6 tools)

Local Tools:

• ClinicalTrials_get_database_stats (from Clinicaltrials Gov Tools)

• ClinicalTrials_get_field_values (from Clinicaltrials Gov Tools)

• ClinicalTrials_get_study (from Clinicaltrials Gov Tools)

• ClinicalTrials_search_by_intervention (from Clinicaltrials Gov Tools)

• ClinicalTrials_search_by_sponsor (from Clinicaltrials Gov Tools)

• ClinicalTrials_search_studies (from Clinicaltrials Gov Tools)

ClueTool (5 tools)

Local Tools:

• CLUE_get_cell_lines (from Clue Tools)

• CLUE_get_gene_expression (from Clue Tools)

• CLUE_get_perturbation (from Clue Tools)

• CLUE_search_compounds (from Clue Tools)

• CLUE_search_signatures (from Clue Tools)

ComplexPortalTool (2 tools)

Local Tools:

• ComplexPortal_get_complex (from Complex Portal Tools)

• ComplexPortal_search_complexes (from Complex Portal Tools)

ComposeTool (11 tools)

Local Tools:

• BiomarkerDiscoveryWorkflow (from Compose Tools)

• ComprehensiveDrugDiscoveryPipeline (from Compose Tools)

• DrugSafetyAnalyzer (from Compose Tools)

• LiteratureSearchTool (from Compose Tools)

• MultiAgentLiteratureSearch (from Literature Search Tools)

• OutputSummarizationComposer (from Output Summarization Tools)

• ToolDescriptionOptimizer (from Optimizer Tools)

• ToolDiscover (from Tool Discovery Agents)

• ToolGraphComposer (from Tool Composition Tools)

• ToolGraphGenerationPipeline (from Compose Tools)

• ToolMetadataGenerationPipeline (from Compose Tools)

CorePDFSnippetsTool (1 tools)

Local Tools:

• CORE_get_fulltext_snippets (from Core Tools)

CoreTool (1 tools)

Local Tools:

• CORE_search_papers (from Core Tools)

CrossrefRESTTool (6 tools)

Local Tools:

• Crossref_get_funder (from Crossref Tools)

• Crossref_get_journal (from Crossref Tools)

• Crossref_get_work (from Crossref Tools)

• Crossref_list_funders (from Crossref Tools)

• Crossref_list_types (from Crossref Tools)

• Crossref_search_works (from Crossref Tools)

DBLPTool (1 tools)

Local Tools:

• DBLP_search_publications (from Dblp Tools)

DBpediaSPARQLTool (1 tools)

Local Tools:

• DBpedia_SPARQL_query (from Dbpedia Tools)

DGIdbTool (4 tools)

Local Tools:

• DGIdb_get_drug_gene_interactions (from Dgidb Tools)

• DGIdb_get_drug_info (from Dgidb Tools)

• DGIdb_get_gene_druggability (from Dgidb Tools)

• DGIdb_get_gene_info (from Dgidb Tools)

DNATool (10 tools)

Local Tools:

• DNA_calculate_gc_content (from Dna Tools)

• DNA_codon_optimize (from Dna Tools)

• DNA_find_orfs (from Dna Tools)

• DNA_find_restriction_sites (from Dna Tools)

• DNA_gibson_design (from Dna Tools)

• DNA_golden_gate_design (from Dna Tools)

• DNA_primer_design (from Dna Tools)

• DNA_reverse_complement (from Dna Tools)

• DNA_translate_sequence (from Dna Tools)

• DNA_virtual_digest (from Dna Tools)

DOAJTool (1 tools)

Local Tools:

• DOAJ_search_articles (from Doaj Tools)

DailyMedSPLParserTool (5 tools)

Local Tools:

• DailyMed_parse_adverse_reactions (from Dailymed Tools)

• DailyMed_parse_clinical_pharmacology (from Dailymed Tools)

• DailyMed_parse_contraindications (from Dailymed Tools)

• DailyMed_parse_dosing (from Dailymed Tools)

• DailyMed_parse_drug_interactions (from Dailymed Tools)

DatasetTool (7 tools)

Local Tools:

• dict_search (from Dataset Tools)

• dili_search (from Dataset Tools)

• diqt_search (from Dataset Tools)

• drugbank_full_search (from Dataset Tools)

• drugbank_links_search (from Dataset Tools)

• drugbank_vocab_filter (from Dataset Tools)

• drugbank_vocab_search (from Dataset Tools)

DbfetchRESTTool (4 tools)

Local Tools:

• dbfetch_fetch_batch (from Dbfetch Tools)

• dbfetch_fetch_entry (from Dbfetch Tools)

• dbfetch_list_databases (from Dbfetch Tools)

• dbfetch_list_formats (from Dbfetch Tools)

DeepGOTool (1 tools)

Local Tools:

• DeepGO_predict_function (from Deepgo Tools)

DepMapTool (5 tools)

Local Tools:

• DepMap_get_cell_line (from Depmap Tools)

• DepMap_get_cell_lines (from Depmap Tools)

• DepMap_get_gene_dependencies (from Depmap Tools)

• DepMap_search_cell_lines (from Depmap Tools)

• DepMap_search_genes (from Depmap Tools)

DfamTool (3 tools)

Local Tools:

• Dfam_get_annotations (from Dfam Tools)

• Dfam_get_family (from Dfam Tools)

• Dfam_search_families (from Dfam Tools)

DisGeNETTool (5 tools)

Local Tools:

• DisGeNET_get_disease_genes (from Disgenet Tools)

• DisGeNET_get_gda (from Disgenet Tools)

• DisGeNET_get_vda (from Disgenet Tools)

• DisGeNET_search_disease (from Disgenet Tools)

• DisGeNET_search_gene (from Disgenet Tools)

DisProtTool (2 tools)

Local Tools:

• DisProt_get_entry (from Disprot Tools)

• DisProt_search (from Disprot Tools)

DiseaseOntologyTool (2 tools)

Local Tools:

• DiseaseOntology_get_parents (from Disease Ontology Tools)

• DiseaseOntology_get_term (from Disease Ontology Tools)

DiseaseTargetScoreTool (10 tools)

Local Tools:

• cancer_biomarkers_disease_target_score (from Disease Target Score Tools)

• cancer_gene_census_disease_target_score (from Disease Target Score Tools)

• chembl_disease_target_score (from Disease Target Score Tools)

• disease_target_score (from Disease Target Score Tools)

• europepmc_disease_target_score (from Disease Target Score Tools)

• eva_disease_target_score (from Disease Target Score Tools)

• eva_somatic_disease_target_score (from Disease Target Score Tools)

• expression_atlas_disease_target_score (from Disease Target Score Tools)

• genomics_england_disease_target_score (from Disease Target Score Tools)

• reactome_disease_target_score (from Disease Target Score Tools)

DoseResponseTool (3 tools)

Local Tools:

• DoseResponse_calculate_ic50 (from Dose Response Tools)

• DoseResponse_compare_potency (from Dose Response Tools)

• DoseResponse_fit_curve (from Dose Response Tools)

DrugSynergyTool (3 tools)

Local Tools:

• DrugSynergy_calculate_bliss (from Drug Synergy Tools)

• DrugSynergy_calculate_hsa (from Drug Synergy Tools)

• DrugSynergy_calculate_zip (from Drug Synergy Tools)

DynamicPackageDiscovery (1 tools)

Local Tools:

• dynamic_package_discovery (from Package Discovery Tools)

EBIProteinsCoordinatesTool (1 tools)

Local Tools:

• EBIProteins_get_coordinate_mapping (from Ebi Proteins Coordinates Tools)

EBIProteinsEpitopeTool (1 tools)

Local Tools:

• EBIProteins_get_epitopes (from Ebi Proteins Epitope Tools)

EBIProteinsExtTool (7 tools)

Local Tools:

• EBIProteins_get_antigen (from Ebi Proteins Ext Tools)

• EBIProteins_get_coordinates (from Ebi Proteins Ext Tools)

• EBIProteins_get_features (from Ebi Proteins Ext Tools)

• EBIProteins_get_mutagenesis (from Ebi Proteins Ext Tools)

• EBIProteins_get_proteomics_peptides (from Ebi Proteins Ext Tools)

• EBIProteins_get_proteomics_ptm (from Ebi Proteins Ext Tools)

• EBIProteins_get_variation (from Ebi Proteins Ext Tools)

EBIProteinsFeaturesTool (3 tools)

Local Tools:

• EBIProteins_get_domains_sites (from Ebi Proteins Features Tools)

• EBIProteins_get_molecule_processing (from Ebi Proteins Features Tools)

• EBIProteins_get_structural_features (from Ebi Proteins Features Tools)

EBIProteinsInteractionsTool (2 tools)

Local Tools:

• EBIProteins_get_interaction_details (from Ebi Proteins Interactions Tools)

• EBIProteins_get_interactions (from Ebi Proteins Interactions Tools)

EBISearchRESTTool (7 tools)

Local Tools:

• ebi_cross_reference_search (from Ebi Search Tools)

• ebi_get_domain_fields (from Ebi Search Tools)

• ebi_get_domain_info (from Ebi Search Tools)

• ebi_get_entry (from Ebi Search Tools)

• ebi_list_domains (from Ebi Search Tools)

• ebi_search_domain (from Ebi Search Tools)

• ebi_search_with_facets (from Ebi Search Tools)

EBITaxonomyTool (4 tools)

Local Tools:

• EBITaxonomy_get_by_id (from Ebi Taxonomy Tools)

• EBITaxonomy_get_by_scientific_name (from Ebi Taxonomy Tools)

• EBITaxonomy_search_by_name (from Ebi Taxonomy Tools)

• EBITaxonomy_suggest (from Ebi Taxonomy Tools)

EFOTool (1 tools)

Local Tools:

• OSL_get_efo_id_by_disease_name (from Efo Tools)

EMDBRESTTool (7 tools)

Local Tools:

• EMDB_get_imaging_info (from Emdb Tools)

• EMDB_get_map_info (from Emdb Tools)

• EMDB_get_publications (from Emdb Tools)

• EMDB_get_sample_info (from Emdb Tools)

• EMDB_get_structure (from Emdb Tools)

• EMDB_get_validation (from Emdb Tools)

• EMDB_search_structures (from Emdb Tools)

EMoleculesTool (4 tools)

Local Tools:

• eMolecules_get_compound (from Emolecules Tools)

• eMolecules_get_vendors (from Emolecules Tools)

• eMolecules_search (from Emolecules Tools)

• eMolecules_search_smiles (from Emolecules Tools)

ENABrowserRESTTool (6 tools)

Local Tools:

• ena_get_entry (from Ena Browser Tools)

• ena_get_entry_history (from Ena Browser Tools)

• ena_get_entry_summary (from Ena Browser Tools)

• ena_get_sequence_embl (from Ena Browser Tools)

• ena_get_sequence_fasta (from Ena Browser Tools)

• ena_get_sequence_xml (from Ena Browser Tools)

ENAPortalTool (3 tools)

Local Tools:

• ENAPortal_count_records (from Ena Portal Tools)

• ENAPortal_search_samples (from Ena Portal Tools)

• ENAPortal_search_studies (from Ena Portal Tools)

ENCODEFilesTool (1 tools)

Local Tools:

• ENCODE_list_files (from Encode Tools)

ENCODERESTTool (3 tools)

Local Tools:

• ENCODE_get_biosample (from Encode Tools)

• ENCODE_get_experiment (from Encode Tools)

• ENCODE_get_file (from Encode Tools)

ENCODESearchBiosamplesTool (1 tools)

Local Tools:

• ENCODE_search_biosamples (from Encode Tools)

ENCODESearchTool (1 tools)

Local Tools:

• ENCODE_search_experiments (from Encode Tools)

EOLTool (4 tools)

Local Tools:

• EOL_get_collection (from Eol Tools)

• EOL_get_hierarchy_entry (from Eol Tools)

• EOL_get_page (from Eol Tools)

• EOL_search_species (from Eol Tools)

EVETool (2 tools)

Local Tools:

• EVE_get_gene_info (from Eve Tools)

• EVE_get_variant_score (from Eve Tools)

EmbeddingDatabase (3 tools)

Local Tools:

• embedding_database_add (from Embedding Tools)

• embedding_database_create (from Embedding Tools)

• embedding_database_search (from Embedding Tools)

EmbeddingSync (2 tools)

Local Tools:

• embedding_sync_download (from Embedding Tools)

• embedding_sync_upload (from Embedding Tools)

EnamineTool (4 tools)

Local Tools:

• Enamine_get_compound (from Enamine Tools)

• Enamine_get_libraries (from Enamine Tools)

• Enamine_search_catalog (from Enamine Tools)

• Enamine_search_smiles (from Enamine Tools)

EnrichrTool (1 tools)

Local Tools:

• enrichr_gene_enrichment_analysis (from Enrichr Tools)

EnsemblArchiveTool (2 tools)

Local Tools:

• EnsemblArchive_batch_lookup (from Ensembl Archive Tools)

• EnsemblArchive_get_id_history (from Ensembl Archive Tools)

EnsemblComparaTool (3 tools)

Local Tools:

• EnsemblCompara_get_gene_tree (from Ensembl Compara Tools)

• EnsemblCompara_get_orthologues (from Ensembl Compara Tools)

• EnsemblCompara_get_paralogues (from Ensembl Compara Tools)

EnsemblInfoTool (2 tools)

Local Tools:

• Ensembl_get_assembly_info (from Ensembl Info Tools)

• Ensembl_get_species_info (from Ensembl Info Tools)

EnsemblLDTool (2 tools)

Local Tools:

• EnsemblLD_get_ld_pairwise (from Ensembl Ld Tools)

• EnsemblLD_get_ld_variants (from Ensembl Ld Tools)

EnsemblMapTool (2 tools)

Local Tools:

• EnsemblMap_convert_coordinates (from Ensembl Map Tools)

• EnsemblMap_translate_coordinates (from Ensembl Map Tools)

EnsemblOverlapTool (2 tools)

Local Tools:

• Ensembl_get_gene_overlapping_features (from Ensembl Overlap Tools)

• Ensembl_get_region_features (from Ensembl Overlap Tools)

EnsemblPhenotypeTool (3 tools)

Local Tools:

• EnsemblPheno_get_by_gene (from Ensembl Phenotype Tools)

• EnsemblPheno_get_by_region (from Ensembl Phenotype Tools)

• EnsemblPheno_get_by_variant (from Ensembl Phenotype Tools)

EnsemblRESTTool (21 tools)

Local Tools:

• ensembl_get_alignment (from Ensembl Tools)

• ensembl_get_archive (from Ensembl Tools)

• ensembl_get_genetree (from Ensembl Tools)

• ensembl_get_homology (from Ensembl Tools)

• ensembl_get_ontology_ancestors (from Ensembl Tools)

• ensembl_get_ontology_descendants (from Ensembl Tools)

• ensembl_get_ontology_term (from Ensembl Tools)

• ensembl_get_overlap_features (from Ensembl Tools)

• ensembl_get_regulatory_features (from Ensembl Tools)

• ensembl_get_sequence (from Ensembl Tools)

• ensembl_get_species (from Ensembl Tools)

• ensembl_get_structural_variants (from Ensembl Tools)

• ensembl_get_sv_detail (from Ensembl Tools)

• ensembl_get_taxonomy (from Ensembl Tools)

• ensembl_get_variants (from Ensembl Tools)

• ensembl_get_variation (from Ensembl Tools)

• ensembl_get_variation_phenotypes (from Ensembl Tools)

• ensembl_get_xrefs (from Ensembl Tools)

• ensembl_get_xrefs_by_name (from Ensembl Tools)

• ensembl_lookup_gene (from Ensembl Tools)

• ensembl_vep_region (from Ensembl Tools)

EnsemblRegulationTool (3 tools)

Local Tools:

• EnsemblReg_get_binding_matrix (from Ensembl Regulation Tools)

• EnsemblReg_get_constrained_elements (from Ensembl Regulation Tools)

• EnsemblReg_get_motif_features (from Ensembl Regulation Tools)

EnsemblSequenceTool (2 tools)

Local Tools:

• EnsemblSeq_get_id_sequence (from Ensembl Sequence Tools)

• EnsemblSeq_get_region_sequence (from Ensembl Sequence Tools)

EnsemblVEPTool (3 tools)

Local Tools:

• EnsemblVEP_annotate_hgvs (from Ensembl Vep Tools)

• EnsemblVEP_annotate_rsid (from Ensembl Vep Tools)

• EnsemblVEP_variant_recoder (from Ensembl Vep Tools)

EnsemblVariationExtTool (2 tools)

Local Tools:

• EnsemblVar_get_population_frequencies (from Ensembl Variation Ext Tools)

• EnsemblVar_get_variant_consequences (from Ensembl Variation Ext Tools)

EnsemblXrefsTool (2 tools)

Local Tools:

• Ensembl_get_cross_references (from Ensembl Xrefs Tools)

• Ensembl_lookup_gene_by_symbol (from Ensembl Xrefs Tools)

EpiGraphDBTool (7 tools)

Local Tools:

• EpiGraphDB_get_drugs_for_trait (from Epigraphdb Tools)

• EpiGraphDB_get_gene_drug_associations (from Epigraphdb Tools)

• EpiGraphDB_get_genetic_correlations (from Epigraphdb Tools)

• EpiGraphDB_get_mendelian_randomization (from Epigraphdb Tools)

• EpiGraphDB_map_gwas_to_efo (from Epigraphdb Tools)

• EpiGraphDB_search_gene (from Epigraphdb Tools)

• EpiGraphDB_search_opengwas (from Epigraphdb Tools)

EpigenomicsTool (9 tools)

Local Tools:

• ENCODE_get_chromatin_state (from Epigenomics Tools)

• ENCODE_search_annotations (from Epigenomics Tools)

• ENCODE_search_chromatin_accessibility (from Epigenomics Tools)

• ENCODE_search_histone_experiments (from Epigenomics Tools)

• ENCODE_search_methylation_experiments (from Epigenomics Tools)

• EnsemblReg_get_regulatory_elements (from Epigenomics Tools)

• GEO_get_dataset_details (from Epigenomics Tools)

• GEO_search_chipseq_datasets (from Epigenomics Tools)

• GEO_search_methylation_datasets (from Epigenomics Tools)

EuHealthDeepDiveTool (1 tools)

Local Tools:

• euhealthinfo_deepdive (from Euhealth Tools)

EuHealthTopicSearchTool (20 tools)

Local Tools:

• euhealthinfo_search_alcohol_tobacco_psychoactive_use (from Euhealth Tools)

• euhealthinfo_search_births (from Euhealth Tools)

• euhealthinfo_search_cancer (from Euhealth Tools)

• euhealthinfo_search_cancer_registry (from Euhealth Tools)

• euhealthinfo_search_causes_of_death (from Euhealth Tools)

• euhealthinfo_search_covid_19 (from Euhealth Tools)

• euhealthinfo_search_deaths (from Euhealth Tools)

• euhealthinfo_search_diabetes_epidemiology_registry (from Euhealth Tools)

• euhealthinfo_search_disability (from Euhealth Tools)

• euhealthinfo_search_healthcare_expenditure (from Euhealth Tools)

• euhealthinfo_search_hospital_in_patient_data (from Euhealth Tools)

• euhealthinfo_search_infectious_diseases (from Euhealth Tools)

• euhealthinfo_search_key_indicators_registries_surveys (from Euhealth Tools)

• euhealthinfo_search_mental_health (from Euhealth Tools)

• euhealthinfo_search_obesity (from Euhealth Tools)

• euhealthinfo_search_population_health_survey (from Euhealth Tools)

• euhealthinfo_search_primary_care_workforce (from Euhealth Tools)

• euhealthinfo_search_surveillance (from Euhealth Tools)

• euhealthinfo_search_surveillance_mortality_rates (from Euhealth Tools)

• euhealthinfo_search_vaccination (from Euhealth Tools)

EuroPMCAnnotationsTool (3 tools)

Local Tools:

• EuroPMCAnnot_get_annotations_by_type (from Europepmc Annotations Tools)

• EuroPMCAnnot_get_article_annotations (from Europepmc Annotations Tools)

• EuroPMCAnnot_get_chemicals_from_article (from Europepmc Annotations Tools)

EuropePMCFullTextFetchTool (1 tools)

Local Tools:

• EuropePMC_get_fulltext (from Europe Pmc Tools)

EuropePMCFullTextSnippetsTool (1 tools)

Local Tools:

• EuropePMC_get_fulltext_snippets (from Europe Pmc Tools)

EuropePMCGuidelinesTool (1 tools)

Local Tools:

• EuropePMC_Guidelines_Search (from Unified Guideline Tools)

EuropePMCRESTTool (2 tools)

Local Tools:

• EuropePMC_get_citations (from Europe Pmc Tools)

• EuropePMC_get_references (from Europe Pmc Tools)

EuropePMCTool (1 tools)

Local Tools:

• EuropePMC_search_articles (from Europe Pmc Tools)

ExecuteTool (1 tools)

Local Tools:

• execute_tool (from Compact Mode Tools)

ExpressionAtlasTool (4 tools)

Local Tools:

• ExpressionAtlas_get_baseline (from Expression Atlas Tools)

• ExpressionAtlas_get_experiment (from Expression Atlas Tools)

• ExpressionAtlas_search_differential (from Expression Atlas Tools)

• ExpressionAtlas_search_experiments (from Expression Atlas Tools)

FAERSAnalyticsTool (6 tools)

Local Tools:

• FAERS_analyze_temporal_trends (from Faers Analytics Tools)

• FAERS_calculate_disproportionality (from Faers Analytics Tools)

• FAERS_compare_drugs (from Faers Analytics Tools)

• FAERS_filter_serious_events (from Faers Analytics Tools)

• FAERS_rollup_meddra_hierarchy (from Faers Analytics Tools)

• FAERS_stratify_by_demographics (from Faers Analytics Tools)

FDACountAdditiveReactionsTool (6 tools)

Local Tools:

• FAERS_count_additive_administration_routes (from Fda Drug Adverse Event Tools)

• FAERS_count_additive_adverse_reactions (from Fda Drug Adverse Event Tools)

• FAERS_count_additive_event_reports_by_country (from Fda Drug Adverse Event Tools)

• FAERS_count_additive_reaction_outcomes (from Fda Drug Adverse Event Tools)

• FAERS_count_additive_reports_by_reporter_country (from Fda Drug Adverse Event Tools)

• FAERS_count_additive_seriousness_classification (from Fda Drug Adverse Event Tools)

FDADrugAdverseEventDetailTool (5 tools)

Local Tools:

• FAERS_search_adverse_event_reports (from Fda Drug Adverse Event Detail Tools)

• FAERS_search_reports_by_drug_and_indication (from Fda Drug Adverse Event Detail Tools)

• FAERS_search_reports_by_drug_and_outcome (from Fda Drug Adverse Event Detail Tools)

• FAERS_search_reports_by_drug_and_reaction (from Fda Drug Adverse Event Detail Tools)

• FAERS_search_serious_reports_by_drug (from Fda Drug Adverse Event Detail Tools)

FDADrugAdverseEventTool (9 tools)

Local Tools:

• FAERS_count_country_by_drug_event (from Fda Drug Adverse Event Tools)

• FAERS_count_death_related_by_drug (from Fda Drug Adverse Event Tools)

• FAERS_count_drug_routes_by_event (from Fda Drug Adverse Event Tools)

• FAERS_count_drugs_by_drug_event (from Fda Drug Adverse Event Tools)

• FAERS_count_outcomes_by_drug_event (from Fda Drug Adverse Event Tools)

• FAERS_count_patient_age_distribution (from Fda Drug Adverse Event Tools)

• FAERS_count_reactions_by_drug_event (from Fda Drug Adverse Event Tools)

• FAERS_count_reportercountry_by_drug_event (from Fda Drug Adverse Event Tools)

• FAERS_count_seriousness_by_drug_event (from Fda Drug Adverse Event Tools)

FDADrugInteractionDetailTool (1 tools)

Local Tools:

• FAERS_search_reports_by_drug_combination (from Fda Drug Adverse Event Detail Tools)

FDADrugLabel (152 tools)

Local Tools:

• FDA_get_DEA_schedule_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_abuse_dependence_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_abuse_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_accessories_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_active_ingredient_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_adverse_reactions_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_alarms_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_animal_pharmacology_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_assembly_installation_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_boxed_warning_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_brand_name_generic_name (from Fda Drug Labeling Tools)

• FDA_get_carcinogenic_mutagenic_fertility_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_child_safety_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_clinical_pharmacology_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_clinical_studies_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_conditions_info_for_doctor_consult_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_consulting_doctor_pharmacist_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_contact_for_questions_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_contraindications_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_dependence_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_dhcp_letter_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_disposal_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_do_not_use_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_document_id_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_dosage_and_storage_information_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_dosage_forms_and_strengths_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_drug_interactions_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_SPL_ID (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_adverse_reaction (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_conditions_for_doctor_consult (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_dependence_info (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_document_id (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_dosage_info (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_environmental_warning (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_inactive_ingredient (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_labor_and_delivery_info (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_microbiology (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_other_safety_info (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_pharmacodynamics (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_pharmacogenomics (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_precautions (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_pregnancy_or_breastfeeding_info (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_principal_display_panel (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_reference (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_set_id (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_stop_use_info (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_storage_and_handling_info (from Fda Drug Labeling Tools)

• FDA_get_drug_name_by_warnings (from Fda Drug Labeling Tools)

• FDA_get_drug_name_from_patient_package_insert (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_abuse_dependence_info (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_abuse_info (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_accessories (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_active_ingredient (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_alarm (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_animal_pharmacology_info (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_application_number_NDC_number (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_assembly_installation_info (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_boxed_warning (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_child_safety_info (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_clinical_pharmacology (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_clinical_studies (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_consulting_doctor_pharmacist_info (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_contraindications (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_controlled_substance_DEA_schedule (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_dhcp_letter_info (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_disposal_info (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_dosage_forms_and_strengths_info (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_drug_interactions (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_effective_time (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_food_safety_warnings (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_general_precautions (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_geriatric_use (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_health_claim (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_indication (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_info_for_nursing_mothers (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_info_for_owner_or_caregiver (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_ingredient (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_instructions_for_use (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_lab_test_interference (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_lab_tests (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_mechanism_of_action (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_medication_guide (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_nonclinical_toxicology_info (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_nonteratogenic_effects (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_overdosage_info (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_pediatric_use (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_pharmacokinetics (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_population_use (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_pregnancy_effects_info (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_residue_warning (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_risk (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_route (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_safe_handling_warning (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_safety_summary (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_spl_indexing_data_elements (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_teratogenic_effects (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_user_safety_warning (from Fda Drug Labeling Tools)

• FDA_get_drug_names_by_warnings_and_cautions (from Fda Drug Labeling Tools)

• FDA_get_drugs_by_carcinogenic_mutagenic_fertility (from Fda Drug Labeling Tools)

• FDA_get_effective_time_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_environmental_warning_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_general_precautions_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_geriatric_use_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_health_claims_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_inactive_ingredient_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_indications_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_info_for_nursing_mothers_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_info_for_owner_caregiver_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_info_for_patients_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_ingredients_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_instructions_for_use_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_lab_test_interference_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_lab_tests_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_labor_and_delivery_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_manufacturer_name_NDC_number_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_mechanism_of_action_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_medication_guide_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_microbiology_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_nonclinical_toxicology_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_nonteratogenic_effects_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_other_safety_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_overdosage_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_patient_package_insert_from_drug_name (from Fda Drug Labeling Tools)

• FDA_get_pediatric_use_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_pharmacodynamics_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_pharmacogenomics_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_pharmacokinetics_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_population_use_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_precautions_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_pregnancy_effects_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_pregnancy_or_breastfeeding_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_principal_display_panel_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_purpose_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_recent_changes_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_reference_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_risk_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_route_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_safe_handling_warnings_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_safety_summary_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_spl_indexing_data_elements_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_spl_unclassified_section_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_stop_use_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_storage_and_handling_info_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_teratogenic_effects_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_user_safety_warning_by_drug_names (from Fda Drug Labeling Tools)

• FDA_get_warnings_and_cautions_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_warnings_by_drug_name (from Fda Drug Labeling Tools)

• FDA_get_when_using_info (from Fda Drug Labeling Tools)

• FDA_retrieve_device_use_by_drug_name (from Fda Drug Labeling Tools)

• FDA_retrieve_drug_name_by_device_use (from Fda Drug Labeling Tools)

• FDA_retrieve_drug_names_by_patient_medication_info (from Fda Drug Labeling Tools)

• FDA_retrieve_patient_medication_info_by_drug_name (from Fda Drug Labeling Tools)

FDADrugLabelAggregated (1 tools)

Local Tools:

• FDA_get_drug_names_by_indication_aggregated (from Fda Drug Labeling Tools)

FDADrugLabelFieldValueTool (1 tools)

Local Tools:

• FDA_get_drug_label_info_by_field_value (from Fda Drug Labeling Tools)

FDADrugLabelGetDrugGenericNameTool (1 tools)

Local Tools:

• FDA_get_drug_generic_name (from Fda Drug Labeling Tools)

FDADrugLabelStats (1 tools)

Local Tools:

• FDA_get_drug_names_by_indication_stats (from Fda Drug Labeling Tools)

FDALabelTool (3 tools)

Local Tools:

• FDA_get_drug_label (from Openfda Label Tools)

• FDA_list_drug_classes (from Openfda Label Tools)

• FDA_search_drug_labels (from Openfda Label Tools)

FDAOrangeBookTool (6 tools)

Local Tools:

• FDA_OrangeBook_check_generic_availability (from Fda Orange Book Tools)

• FDA_OrangeBook_get_approval_history (from Fda Orange Book Tools)

• FDA_OrangeBook_get_exclusivity (from Fda Orange Book Tools)

• FDA_OrangeBook_get_patent_info (from Fda Orange Book Tools)

• FDA_OrangeBook_get_te_code (from Fda Orange Book Tools)

• FDA_OrangeBook_search_drug (from Fda Orange Book Tools)

FDAPharmacogenomicBiomarkersTool (1 tools)

Local Tools:

• fda_pharmacogenomic_biomarkers (from Fda Pharmacogenomic Biomarkers Tools)

FatcatScholarTool (1 tools)

Local Tools:

• Fatcat_search_scholar (from Fatcat Tools)

FileDownloadTool (1 tools)

Local Tools:

• download_file (from File Download Tools)

FoodDataCentralTool (2 tools)

Local Tools:

• FoodDataCentral_get_food (from Fooddata Central Tools)

• FoodDataCentral_search_foods (from Fooddata Central Tools)

FourDNTool (4 tools)

Local Tools:

• FourDN_get_download_url (from Fourdn Tools)

• FourDN_get_experiment_metadata (from Fourdn Tools)

• FourDN_get_file_metadata (from Fourdn Tools)

• FourDN_search_data (from Fourdn Tools)

GBIFOccurrenceTool (1 tools)

Local Tools:

• GBIF_search_occurrences (from Gbif Tools)

GBIFTool (1 tools)

Local Tools:

• GBIF_search_species (from Gbif Tools)

GDCCNVTool (1 tools)

Local Tools:

• GDC_get_cnv_data (from Gdc Tools)

GDCCasesTool (1 tools)

Local Tools:

• GDC_search_cases (from Gdc Tools)

GDCFilesTool (1 tools)

Local Tools:

• GDC_list_files (from Gdc Tools)

GDCGeneExpressionTool (1 tools)

Local Tools:

• GDC_get_gene_expression (from Gdc Tools)

GDCMutationFrequencyTool (1 tools)

Local Tools:

• GDC_get_mutation_frequency (from Gdc Tools)

GDCProjectsTool (1 tools)

Local Tools:

• GDC_list_projects (from Gdc Tools)

GDCSSMTool (1 tools)

Local Tools:

• GDC_get_ssm_by_gene (from Gdc Tools)

GEOGetDatasetInfo (1 tools)

Local Tools:

• geo_get_dataset_info (from Geo Tools)

GEOGetSampleInfo (1 tools)

Local Tools:

• geo_get_sample_info (from Geo Tools)

GEOSearchDatasets (1 tools)

Local Tools:

• geo_search_datasets (from Geo Tools)

GINGuidelinesTool (1 tools)

Local Tools:

• GIN_Guidelines_Search (from Unified Guideline Tools)

GNPSTool (2 tools)

Local Tools:

• GNPS_compare_spectra (from Gnps Tools)

• GNPS_get_spectrum (from Gnps Tools)

GOAPITool (3 tools)

Local Tools:

• GOAPI_get_gene_functions (from Go Api Tools)

• GOAPI_get_genes_by_function (from Go Api Tools)

• GOAPI_get_term (from Go Api Tools)

GPCRdbTool (5 tools)

Local Tools:

• GPCRdb_get_ligands (from Gpcrdb Tools)

• GPCRdb_get_mutations (from Gpcrdb Tools)

• GPCRdb_get_protein (from Gpcrdb Tools)

• GPCRdb_get_structures (from Gpcrdb Tools)

• GPCRdb_list_proteins (from Gpcrdb Tools)

GProfilerTool (4 tools)

Local Tools:

• gProfiler_annotate_snps (from Gprofiler Tools)

• gProfiler_convert_ids (from Gprofiler Tools)

• gProfiler_enrichment (from Gprofiler Tools)

• gProfiler_find_orthologs (from Gprofiler Tools)

GTExEQTLTool (1 tools)

Local Tools:

• GTEx_query_eqtl (from Gtex Tools)

GTExExpressionTool (1 tools)

Local Tools:

• GTEx_get_expression_summary (from Gtex Tools)

GTExV2Tool (10 tools)

Local Tools:

• GTEx_calculate_eqtl (from Gtex V2 Tools)

• GTEx_get_dataset_info (from Gtex V2 Tools)

• GTEx_get_eqtl_genes (from Gtex V2 Tools)

• GTEx_get_gene_expression (from Gtex V2 Tools)

• GTEx_get_median_gene_expression (from Gtex V2 Tools)

• GTEx_get_multi_tissue_eqtls (from Gtex V2 Tools)

• GTEx_get_sample_info (from Gtex V2 Tools)

• GTEx_get_single_tissue_eqtls (from Gtex V2 Tools)

• GTEx_get_tissue_sites (from Gtex V2 Tools)

• GTEx_get_top_expressed_genes (from Gtex V2 Tools)

GWASAssociationByID (1 tools)

Local Tools:

• gwas_get_association_by_id (from Gwas Tools)

GWASAssociationSearch (1 tools)

Local Tools:

• gwas_search_associations (from Gwas Tools)

GWASAssociationsForSNP (1 tools)

Local Tools:

• gwas_get_associations_for_snp (from Gwas Tools)

GWASAssociationsForStudy (1 tools)

Local Tools:

• gwas_get_associations_for_study (from Gwas Tools)

GWASAssociationsForTrait (1 tools)

Local Tools:

• gwas_get_associations_for_trait (from Gwas Tools)

GWASGeneSearch (1 tools)

Local Tools:

• GWAS_search_associations_by_gene (from Gwas Tools)

GWASSNPByID (1 tools)

Local Tools:

• gwas_get_snp_by_id (from Gwas Tools)

GWASSNPSearch (1 tools)

Local Tools:

• gwas_search_snps (from Gwas Tools)

GWASSNPsForGene (1 tools)

Local Tools:

• gwas_get_snps_for_gene (from Gwas Tools)

GWASStudiesForTrait (1 tools)

Local Tools:

• gwas_get_studies_for_trait (from Gwas Tools)

GWASStudyByID (1 tools)

Local Tools:

• gwas_get_study_by_id (from Gwas Tools)

GWASStudySearch (1 tools)

Local Tools:

• gwas_search_studies (from Gwas Tools)

GWASVariantsForTrait (1 tools)

Local Tools:

• gwas_get_variants_for_trait (from Gwas Tools)

GeneOntologyTool (5 tools)

Local Tools:

• GO_get_annotations_for_gene (from Gene Ontology Tools)

• GO_get_genes_for_term (from Gene Ontology Tools)

• GO_get_term_by_id (from Gene Ontology Tools)

• GO_get_term_details (from Gene Ontology Tools)

• GO_search_terms (from Gene Ontology Tools)

GenomeNexusTool (4 tools)

Local Tools:

• GenomeNexus_annotate_mutation (from Genome Nexus Tools)

• GenomeNexus_annotate_variant (from Genome Nexus Tools)

• GenomeNexus_get_cancer_hotspots (from Genome Nexus Tools)

• GenomeNexus_get_canonical_transcript (from Genome Nexus Tools)

GetSPLBySetIDTool (1 tools)

Local Tools:

• DailyMed_get_spl_by_setid (from Dailymed Tools)

GetToolInfo (1 tools)

Local Tools:

• get_tool_info (from Compact Mode Tools)

GlyGenTool (5 tools)

Local Tools:

• GlyGen_get_glycan (from Glygen Tools)

• GlyGen_get_glycoprotein (from Glygen Tools)

• GlyGen_get_site (from Glygen Tools)

• GlyGen_search_glycans (from Glygen Tools)

• GlyGen_search_glycoproteins (from Glygen Tools)

GrepTools (1 tools)

Local Tools:

• grep_tools (from Compact Mode Tools)

GxATool (3 tools)

Local Tools:

• GxA_get_experiment_expression (from Gxa Tools)

• GxA_get_experiment_info (from Gxa Tools)

• GxA_list_experiments (from Gxa Tools)

HALTool (1 tools)

Local Tools:

• HAL_search_archive (from Hal Tools)

HCATool (2 tools)

Local Tools:

• hca_get_file_manifest (from Hca Tools)

• hca_search_projects (from Hca Tools)

HGNCTool (4 tools)

Local Tools:

• HGNC_fetch_gene_by_id (from Hgnc Tools)

• HGNC_fetch_gene_by_symbol (from Hgnc Tools)

• HGNC_search_by_location (from Hgnc Tools)

• HGNC_search_genes (from Hgnc Tools)

HMDBTool (3 tools)

Local Tools:

• HMDB_get_diseases (from Hmdb Tools)

• HMDB_get_metabolite (from Hmdb Tools)

• HMDB_search (from Hmdb Tools)

HPAGetBiologicalProcessTool (1 tools)

Local Tools:

• HPA_get_biological_processes_by_gene (from Hpa Tools)

HPAGetCancerPrognosticsTool (1 tools)

Local Tools:

• HPA_get_cancer_prognostics_by_gene (from Hpa Tools)

HPAGetComparativeExpressionTool (1 tools)

Local Tools:

• HPA_get_comparative_expression_by_gene_and_cellline (from Hpa Tools)

HPAGetContextualBiologicalProcessTool (1 tools)

Local Tools:

• HPA_get_contextual_biological_process_analysis (from Hpa Tools)

HPAGetDiseaseExpressionTool (1 tools)

Local Tools:

• HPA_get_disease_expression_by_gene_tissue_disease (from Hpa Tools)

HPAGetGeneJSONTool (1 tools)

Local Tools:

• HPA_get_gene_basic_info_by_ensembl_id (from Hpa Tools)

HPAGetGenePageDetailsTool (1 tools)

Local Tools:

• HPA_get_comprehensive_gene_details_by_ensembl_id (from Hpa Tools)

HPAGetGeneXMLTool (1 tools)

Local Tools:

• HPA_get_gene_tsv_data_by_ensembl_id (from Hpa Tools)

HPAGetProteinInteractionsTool (1 tools)

Local Tools:

• HPA_get_protein_interactions_by_gene (from Hpa Tools)

HPAGetRnaExpressionBySourceTool (1 tools)

Local Tools:

• HPA_get_rna_expression_by_source (from Hpa Tools)

HPAGetRnaExpressionByTissueTool (1 tools)

Local Tools:

• HPA_get_rna_expression_in_specific_tissues (from Hpa Tools)

HPAGetSubcellularLocationTool (1 tools)

Local Tools:

• HPA_get_subcellular_location (from Hpa Tools)

HPASearchGenesTool (1 tools)

Local Tools:

• HPA_search_genes_by_query (from Hpa Tools)

HPASearchTool (1 tools)

Local Tools:

• HPA_generic_search (from Hpa Tools)

HPOTool (3 tools)

Local Tools:

• HPO_get_term (from Hpo Tools)

• HPO_get_term_hierarchy (from Hpo Tools)

• HPO_search_terms (from Hpo Tools)

HarmonizomeTool (2 tools)

Local Tools:

• Harmonizome_get_gene (from Harmonizome Tools)

• Harmonizome_list_datasets (from Harmonizome Tools)

HealthDisparitiesTool (2 tools)

Local Tools:

• health_disparities_get_county_rankings_info (from Health Disparities Tools)

• health_disparities_get_svi_info (from Health Disparities Tools)

HumanBaseTool (1 tools)

Local Tools:

• humanbase_ppi_analysis (from Humanbase Tools)

ICD10Tool (2 tools)

Local Tools:

• ICD10_get_code_info (from Icd Tools)

• ICD10_search_codes (from Icd Tools)

ICDTool (3 tools)

Local Tools:

• ICD11_browse_hierarchy (from Icd Tools)

• ICD11_get_entity (from Icd Tools)

• ICD11_search_diseases (from Icd Tools)

IEDBTool (8 tools)

Local Tools:

• iedb_get_epitope_antigens (from Iedb Tools)

• iedb_get_epitope_mhc (from Iedb Tools)

• iedb_get_epitope_references (from Iedb Tools)

• iedb_search_antigens (from Iedb Tools)

• iedb_search_bcell (from Iedb Tools)

• iedb_search_epitopes (from Iedb Tools)

• iedb_search_mhc (from Iedb Tools)

• iedb_search_references (from Iedb Tools)

IMGTTool (3 tools)

Local Tools:

• IMGT_get_gene_info (from Imgt Tools)

• IMGT_get_sequence (from Imgt Tools)

• IMGT_search_genes (from Imgt Tools)

IMPCTool (4 tools)

Local Tools:

• IMPC_get_gene_phenotype_hits (from Impc Tools)

• IMPC_get_gene_summary (from Impc Tools)

• IMPC_get_phenotypes_by_gene (from Impc Tools)

• IMPC_search_genes (from Impc Tools)

INaturalistTool (4 tools)

Local Tools:

• iNaturalist_get_species_counts (from Inaturalist Tools)

• iNaturalist_get_taxon (from Inaturalist Tools)

• iNaturalist_search_observations (from Inaturalist Tools)

• iNaturalist_search_taxa (from Inaturalist Tools)

ITISTool (4 tools)

Local Tools:

• ITIS_get_full_record (from Itis Tools)

• ITIS_get_hierarchy (from Itis Tools)

• ITIS_search_by_common_name (from Itis Tools)

• ITIS_search_by_scientific_name (from Itis Tools)

IntActRESTTool (8 tools)

Local Tools:

• intact_get_complex_details (from Intact Tools)

• intact_get_interaction_details (from Intact Tools)

• intact_get_interaction_network (from Intact Tools)

• intact_get_interactions (from Intact Tools)

• intact_get_interactions_by_complex (from Intact Tools)

• intact_get_interactions_by_organism (from Intact Tools)

• intact_get_interactor (from Intact Tools)

• intact_search_interactions (from Intact Tools)

InterProDomainArchTool (3 tools)

Local Tools:

• InterPro_get_clan_members (from Interpro Domain Arch Tools)

• InterPro_get_protein_domain_architecture (from Interpro Domain Arch Tools)

• InterPro_get_structures_for_domain (from Interpro Domain Arch Tools)

InterProEntryTool (2 tools)

Local Tools:

• InterPro_get_entries_for_protein (from Interpro Entry Tools)

• InterPro_search_entries (from Interpro Entry Tools)

InterProExtTool (1 tools)

Local Tools:

• InterPro_get_proteins_by_domain (from Interpro Ext Tools)

InterProRESTTool (3 tools)

Local Tools:

• InterPro_get_domain_details (from Interpro Tools)

• InterPro_get_protein_domains (from Interpro Tools)

• InterPro_search_domains (from Interpro Tools)

InterProScanTool (3 tools)

Local Tools:

• InterProScan_get_job_results (from Interproscan Tools)

• InterProScan_get_job_status (from Interproscan Tools)

• InterProScan_scan_sequence (from Interproscan Tools)

JASPARRESTTool (8 tools)

Local Tools:

• JASPAR_get_transcription_factors (from Jaspar Tools)

• jaspar_get_matrix (from Jaspar Tools)

• jaspar_get_matrix_versions (from Jaspar Tools)

• jaspar_list_collections (from Jaspar Tools)

• jaspar_list_releases (from Jaspar Tools)

• jaspar_list_species (from Jaspar Tools)

• jaspar_list_taxa (from Jaspar Tools)

• jaspar_search_matrices (from Jaspar Tools)

KEGGExtTool (5 tools)

Local Tools:

• KEGG_get_brite_hierarchy (from Kegg Brite Tools)

• KEGG_get_compound (from Kegg Ext Tools)

• KEGG_get_gene_pathways (from Kegg Ext Tools)

• KEGG_get_pathway_genes (from Kegg Ext Tools)

• KEGG_list_brite_hierarchies (from Kegg Brite Tools)

KEGGFindGenes (1 tools)

Local Tools:

• kegg_find_genes (from Kegg Tools)

KEGGGetGeneInfo (1 tools)

Local Tools:

• kegg_get_gene_info (from Kegg Tools)

KEGGGetPathwayInfo (1 tools)

Local Tools:

• kegg_get_pathway_info (from Kegg Tools)

KEGGListOrganisms (1 tools)

Local Tools:

• kegg_list_organisms (from Kegg Tools)

KEGGSearchPathway (1 tools)

Local Tools:

• kegg_search_pathway (from Kegg Tools)

L1000FWDTool (1 tools)

Local Tools:

• L1000FWD_sig_search (from L1000Fwd Tools)

LOINCTool (4 tools)

Local Tools:

• LOINC_get_answer_list (from Loinc Tools)

• LOINC_get_code_details (from Loinc Tools)

• LOINC_search_forms (from Loinc Tools)

• LOINC_search_tests (from Loinc Tools)

LipidMapsTool (3 tools)

Local Tools:

• LipidMaps_get_compound_by_id (from Lipidmaps Tools)

• LipidMaps_search_by_formula (from Lipidmaps Tools)

• LipidMaps_search_by_name (from Lipidmaps Tools)

ListTools (1 tools)

Local Tools:

• list_tools (from Compact Mode Tools)

MCPAutoLoaderTool (5 tools)

Local Tools:

• mcp_auto_loader_boltz (from Boltz Mcp Loader Tools)

• mcp_auto_loader_esm (from Mcp Auto Loader Esm)

• mcp_auto_loader_expert_feedback (from Expert Feedback Tools)

• mcp_auto_loader_txagent (from Txagent Client Tools)

• mcp_auto_loader_uspto_downloader (from Uspto Downloader Tools)

MGnifyAnalysesTool (1 tools)

Local Tools:

• MGnify_list_analyses (from Mgnify Tools)

MGnifyExpandedTool (4 tools)

Local Tools:

• MGnify_get_genome (from Mgnify Expanded Tools)

• MGnify_get_study_detail (from Mgnify Expanded Tools)

• MGnify_list_biomes (from Mgnify Expanded Tools)

• MGnify_search_genomes (from Mgnify Expanded Tools)

MGnifyStudiesTool (1 tools)

Local Tools:

• MGnify_search_studies (from Mgnify Tools)

MPDRESTTool (1 tools)

Local Tools:

• MPD_get_phenotype_data (from Mpd Tools)

MarkItDownTool (1 tools)

Local Tools:

• convert_to_markdown (from Markitdown Tools)

MeSHTool (3 tools)

Local Tools:

• MeSH_get_descriptor (from Mesh Tools)

• MeSH_search_descriptors (from Mesh Tools)

• MeSH_search_terms (from Mesh Tools)

MedlinePlusRESTTool (5 tools)

Local Tools:

• MedlinePlus_connect_lookup_by_code (from Medlineplus Tools)

• MedlinePlus_get_genetics_condition_by_name (from Medlineplus Tools)

• MedlinePlus_get_genetics_gene_by_name (from Medlineplus Tools)

• MedlinePlus_get_genetics_index (from Medlineplus Tools)

• MedlinePlus_search_topics_by_keyword (from Medlineplus Tools)

MetaCycTool (4 tools)

Local Tools:

• MetaCyc_get_compound (from Metacyc Tools)

• MetaCyc_get_pathway (from Metacyc Tools)

• MetaCyc_get_reaction (from Metacyc Tools)

• MetaCyc_search_pathways (from Metacyc Tools)

MetaboLightsRESTTool (9 tools)

Local Tools:

• metabolights_get_study (from Metabolights Tools)

• metabolights_get_study_assays (from Metabolights Tools)

• metabolights_get_study_data_files (from Metabolights Tools)

• metabolights_get_study_factors (from Metabolights Tools)

• metabolights_get_study_files (from Metabolights Tools)

• metabolights_get_study_protocols (from Metabolights Tools)

• metabolights_get_study_samples (from Metabolights Tools)

• metabolights_list_studies (from Metabolights Tools)

• metabolights_search_studies (from Metabolights Tools)

MetabolomicsWorkbenchTool (6 tools)

Local Tools:

• MetabolomicsWorkbench_get_compound_by_pubchem_cid (from Metabolomics Workbench Tools)

• MetabolomicsWorkbench_get_refmet_info (from Metabolomics Workbench Tools)

• MetabolomicsWorkbench_get_study (from Metabolomics Workbench Tools)

• MetabolomicsWorkbench_search_by_exact_mass (from Metabolomics Workbench Tools)

• MetabolomicsWorkbench_search_by_mz (from Metabolomics Workbench Tools)

• MetabolomicsWorkbench_search_compound_by_name (from Metabolomics Workbench Tools)

MobiDBTool (2 tools)

Local Tools:

• MobiDB_get_consensus (from Mobidb Tools)

• MobiDB_get_protein (from Mobidb Tools)

Molecule2DTool (1 tools)

Local Tools:

• visualize_molecule_2d (from Molecule 2D Tools)

Molecule3DTool (1 tools)

Local Tools:

• visualize_molecule_3d (from Molecule 3D Tools)

Monarch (5 tools)

Local Tools:

• Monarch_get_gene_diseases (from Monarch Tools)

• Monarch_get_gene_phenotypes (from Monarch Tools)

• Monarch_search_gene (from Monarch Tools)

• get_HPO_ID_by_phenotype (from Monarch Tools)

• get_phenotype_by_HPO_ID (from Monarch Tools)

MonarchDiseasesForMultiplePheno (1 tools)

Local Tools:

• get_joint_associated_diseases_by_HPO_ID_list (from Monarch Tools)

MonarchV3Tool (3 tools)

Local Tools:

• MonarchV3_get_associations (from Monarch V3 Tools)

• MonarchV3_get_entity (from Monarch V3 Tools)

• MonarchV3_search (from Monarch V3 Tools)

MyChemTool (2 tools)

Local Tools:

• MyChem_get_chemical_annotation (from Biothings Tools)

• MyChem_query_chemicals (from Biothings Tools)

MyDiseaseTool (2 tools)

Local Tools:

• MyDisease_get_disease (from Mydisease Tools)

• MyDisease_search_diseases (from Mydisease Tools)

MyGeneTool (3 tools)

Local Tools:

• MyGene_batch_query (from Biothings Tools)

• MyGene_get_gene_annotation (from Biothings Tools)

• MyGene_query_genes (from Biothings Tools)

MyVariantTool (2 tools)

Local Tools:

• MyVariant_get_variant_annotation (from Biothings Tools)

• MyVariant_query_variants (from Biothings Tools)

NCBIBlastTool (2 tools)

Local Tools:

• BLAST_nucleotide_search (from Blast Tools)

• BLAST_protein_search (from Blast Tools)

NCBIDatasetsTool (5 tools)

Local Tools:

• NCBIDatasets_get_gene (from Ncbi Datasets Tools)

• NCBIDatasets_get_gene_by_symbol (from Ncbi Datasets Tools)

• NCBIDatasets_get_orthologs (from Ncbi Datasets Tools)

• NCBIDatasets_get_taxonomy (from Ncbi Datasets Tools)

• NCBIDatasets_suggest_taxonomy (from Ncbi Datasets Tools)

NCBINucleotideSearchTool (3 tools)

Local Tools:

• NCBI_fetch_accessions (from Ncbi Nucleotide Tools)

• NCBI_get_sequence (from Ncbi Nucleotide Tools)

• NCBI_search_nucleotide (from Ncbi Nucleotide Tools)

NCBISRATool (4 tools)

Local Tools:

• NCBI_SRA_get_download_urls (from Ncbi Sra Tools)

• NCBI_SRA_get_run_info (from Ncbi Sra Tools)

• NCBI_SRA_link_to_biosample (from Ncbi Sra Tools)

• NCBI_SRA_search_runs (from Ncbi Sra Tools)

NCCNGuidelineTool (3 tools)

Local Tools:

• NCCN_get_patient_guideline (from Ada Aha Nccn Tools)

• NCCN_list_patient_guidelines (from Ada Aha Nccn Tools)

• NCCN_search_guidelines (from Ada Aha Nccn Tools)

NCIThesaurusTool (3 tools)

Local Tools:

• NCIThesaurus_get_children (from Nci Thesaurus Tools)

• NCIThesaurus_get_concept (from Nci Thesaurus Tools)

• NCIThesaurus_search (from Nci Thesaurus Tools)

NDExTool (3 tools)

Local Tools:

• NDEx_get_network (from Ndex Tools)

• NDEx_get_network_summary (from Ndex Tools)

• NDEx_search_networks (from Ndex Tools)

NHANESTool (2 tools)

Local Tools:

• nhanes_get_dataset_info (from Nhanes Tools)

• nhanes_search_datasets (from Nhanes Tools)

NICEGuidelineFullTextTool (1 tools)

Local Tools:

• NICE_Guideline_Full_Text (from Unified Guideline Tools)

NICEWebScrapingTool (1 tools)

Local Tools:

• NICE_Clinical_Guidelines_Search (from Unified Guideline Tools)

NeuroMorphoTool (4 tools)

Local Tools:

• NeuroMorpho_get_field_values (from Neuromorpho Tools)

• NeuroMorpho_get_morphometry (from Neuromorpho Tools)

• NeuroMorpho_get_neuron (from Neuromorpho Tools)

• NeuroMorpho_search_neurons (from Neuromorpho Tools)

NextstrainTool (2 tools)

Local Tools:

• Nextstrain_get_dataset (from Nextstrain Tools)

• Nextstrain_list_datasets (from Nextstrain Tools)

NvidiaNIMTool (16 tools)

Local Tools:

• NvidiaNIM_alphafold2 (from Nvidia Nim Tools)

• NvidiaNIM_alphafold2_multimer (from Nvidia Nim Tools)

• NvidiaNIM_boltz2 (from Nvidia Nim Tools)

• NvidiaNIM_diffdock (from Nvidia Nim Tools)

• NvidiaNIM_esm2_650m (from Nvidia Nim Tools)

• NvidiaNIM_esmfold (from Nvidia Nim Tools)

• NvidiaNIM_evo2 (from Nvidia Nim Tools)

• NvidiaNIM_genmol (from Nvidia Nim Tools)

• NvidiaNIM_maisi (from Nvidia Nim Tools)

• NvidiaNIM_molmim (from Nvidia Nim Tools)

• NvidiaNIM_msa_search (from Nvidia Nim Tools)

• NvidiaNIM_openfold2 (from Nvidia Nim Tools)

• NvidiaNIM_openfold3 (from Nvidia Nim Tools)

• NvidiaNIM_proteinmpnn (from Nvidia Nim Tools)

• NvidiaNIM_rfdiffusion (from Nvidia Nim Tools)

• NvidiaNIM_vista3d (from Nvidia Nim Tools)

OBISOccurrenceTool (1 tools)

Local Tools:

• OBIS_search_occurrences (from Obis Tools)

OBISTaxaTool (1 tools)

Local Tools:

• OBIS_search_taxa (from Obis Tools)

ODPHPItemList (1 tools)

Local Tools:

• odphp_itemlist (from Odphp Tools)

ODPHPMyHealthfinder (1 tools)

Local Tools:

• odphp_myhealthfinder (from Odphp Tools)

ODPHPOutlinkFetch (1 tools)

Local Tools:

• odphp_outlink_fetch (from Odphp Tools)

ODPHPTopicSearch (1 tools)

Local Tools:

• odphp_topicsearch (from Odphp Tools)

OLSRESTTool (5 tools)

Local Tools:

• ols_get_efo_ontology_info (from Efo Tools)

• ols_get_efo_term (from Efo Tools)

• ols_get_efo_term_children (from Efo Tools)

• ols_list_ontologies (from Efo Tools)

• ols_search_efo_terms (from Efo Tools)

OLSTool (7 tools)

Local Tools:

• ols_find_similar_terms (from Ols Tools)

• ols_get_ontology_info (from Ols Tools)

• ols_get_term_ancestors (from Ols Tools)

• ols_get_term_children (from Ols Tools)

• ols_get_term_info (from Ols Tools)

• ols_search_ontologies (from Ols Tools)

• ols_search_terms (from Ols Tools)

OMATool (4 tools)

Local Tools:

• OMA_get_group (from Oma Tools)

• OMA_get_hog (from Oma Tools)

• OMA_get_orthologs (from Oma Tools)

• OMA_get_protein (from Oma Tools)

OMIMTool (4 tools)

Local Tools:

• OMIM_get_clinical_synopsis (from Omim Tools)

• OMIM_get_entry (from Omim Tools)

• OMIM_get_gene_map (from Omim Tools)

• OMIM_search (from Omim Tools)

ORCIDTool (4 tools)

Local Tools:

• ORCID_get_employments (from Orcid Tools)

• ORCID_get_profile (from Orcid Tools)

• ORCID_get_works (from Orcid Tools)

• ORCID_search_researchers (from Orcid Tools)

OSFPreprintsTool (1 tools)

Local Tools:

• OSF_search_preprints (from Osf Preprints Tools)

OmniPathTool (8 tools)

Local Tools:

• OmniPath_get_cell_communication_annotations (from Omnipath Tools)

• OmniPath_get_complexes (from Omnipath Tools)

• OmniPath_get_dorothea_regulon (from Omnipath Tools)

• OmniPath_get_enzyme_substrate (from Omnipath Tools)

• OmniPath_get_intercell_roles (from Omnipath Tools)

• OmniPath_get_ligand_receptor_interactions (from Omnipath Tools)

• OmniPath_get_signaling_interactions (from Omnipath Tools)

• OmniPath_get_tf_target_interactions (from Omnipath Tools)

OncoKBTool (5 tools)

Local Tools:

• OncoKB_annotate_copy_number (from Oncokb Tools)

• OncoKB_annotate_variant (from Oncokb Tools)

• OncoKB_get_cancer_genes (from Oncokb Tools)

• OncoKB_get_gene_info (from Oncokb Tools)

• OncoKB_get_levels (from Oncokb Tools)

OpenAIRETool (1 tools)

Local Tools:

• OpenAIRE_search_publications (from Openaire Tools)

OpenAlexGuidelinesTool (1 tools)

Local Tools:

• OpenAlex_Guidelines_Search (from Unified Guideline Tools)

OpenAlexRESTTool (7 tools)

Local Tools:

• openalex_get_author (from Openalex Tools)

• openalex_get_institution (from Openalex Tools)

• openalex_get_work (from Openalex Tools)

• openalex_get_work_by_doi (from Openalex Tools)

• openalex_search_authors (from Openalex Tools)

• openalex_search_institutions (from Openalex Tools)

• openalex_search_works (from Openalex Tools)

OpenAlexTool (1 tools)

Local Tools:

• openalex_literature_search (from Openalex Tools)

OpenNeuroTool (4 tools)

Local Tools:

• OpenNeuro_get_dataset (from Openneuro Tools)

• OpenNeuro_get_dataset_snapshots (from Openneuro Tools)

• OpenNeuro_list_datasets (from Openneuro Tools)

• OpenNeuro_search_by_modality (from Openneuro Tools)

OpenTarget (62 tools)

Local Tools:

• OpenTargets_drug_pharmacogenomics_data (from Opentarget Tools)

• OpenTargets_get_approved_indications_by_drug_chemblId (from Opentarget Tools)

• OpenTargets_get_associated_diseases_by_drug_chemblId (from Opentarget Tools)

• OpenTargets_get_associated_drugs_by_disease_efoId (from Opentarget Tools)

• OpenTargets_get_associated_drugs_by_target_ensemblID (from Opentarget Tools)

• OpenTargets_get_associated_phenotypes_by_disease_efoId (from Opentarget Tools)

• OpenTargets_get_associated_targets_by_disease_efoId (from Opentarget Tools)

• OpenTargets_get_associated_targets_by_drug_chemblId (from Opentarget Tools)

• OpenTargets_get_biological_mouse_models_by_ensemblID (from Opentarget Tools)

• OpenTargets_get_chemical_probes_by_target_ensemblID (from Opentarget Tools)

• OpenTargets_get_credible_set_detail (from Opentarget Genetics Tools)

• OpenTargets_get_disease_ancestors_parents_by_efoId (from Opentarget Tools)

• OpenTargets_get_disease_descendants_children_by_efoId (from Opentarget Tools)

• OpenTargets_get_disease_description_by_efoId (from Opentarget Tools)

• OpenTargets_get_disease_id_description_by_name (from Opentarget Tools)

• OpenTargets_get_disease_ids_by_efoId (from Idmap Tools)

• OpenTargets_get_disease_ids_by_name (from Idmap Tools)

• OpenTargets_get_disease_locations_by_efoId (from Opentarget Tools)

• OpenTargets_get_disease_synonyms_by_efoId (from Opentarget Tools)

• OpenTargets_get_disease_therapeutic_areas_by_efoId (from Opentarget Tools)

• OpenTargets_get_diseases_phenotypes_by_target_ensembl (from Opentarget Tools)

• OpenTargets_get_drug_adverse_events_by_chemblId (from Opentarget Tools)

• OpenTargets_get_drug_approval_status_by_chemblId (from Opentarget Tools)

• OpenTargets_get_drug_blackbox_status_by_chembl_ID (from Opentarget Tools)

• OpenTargets_get_drug_description_by_chemblId (from Opentarget Tools)

• OpenTargets_get_drug_indications_by_chemblId (from Opentarget Tools)

• OpenTargets_get_drug_mechanisms_of_action_by_chemblId (from Opentarget Tools)

• OpenTargets_get_drug_names_by_chemblId (from Opentarget Tools)

• OpenTargets_get_drug_synonyms_by_chemblId (from Opentarget Tools)

• OpenTargets_get_drug_trade_names_by_chemblId (from Opentarget Tools)

• OpenTargets_get_drug_warnings_by_chemblId (from Opentarget Tools)

• OpenTargets_get_evidence_by_datasource (from Opentarget Tools)

• OpenTargets_get_gene_ontology_terms_by_goID (from Opentarget Tools)

• OpenTargets_get_gwas_study (from Opentarget Genetics Tools)

• OpenTargets_get_known_drugs_by_drug_chemblId (from Opentarget Tools)

• OpenTargets_get_parent_child_molecules_by_chembl_ID (from Opentarget Tools)

• OpenTargets_get_publications_by_disease_efoId (from Opentarget Tools)

• OpenTargets_get_publications_by_drug_chemblId (from Opentarget Tools)

• OpenTargets_get_publications_by_target_ensemblID (from Opentarget Tools)

• OpenTargets_get_similar_entities_by_disease_efoId (from Opentarget Tools)

• OpenTargets_get_similar_entities_by_drug_chemblId (from Opentarget Tools)

• OpenTargets_get_similar_entities_by_target_ensemblID (from Opentarget Tools)

• OpenTargets_get_study_credible_sets (from Opentarget Genetics Tools)

• OpenTargets_get_target_classes_by_ensemblID (from Opentarget Tools)

• OpenTargets_get_target_constraint_info_by_ensemblID (from Opentarget Tools)

• OpenTargets_get_target_enabling_packages_by_ensemblID (from Opentarget Tools)

• OpenTargets_get_target_gene_ontology_by_ensemblID (from Opentarget Tools)

• OpenTargets_get_target_genomic_location_by_ensemblID (from Opentarget Tools)

• OpenTargets_get_target_homologues_by_ensemblID (from Opentarget Tools)

• OpenTargets_get_target_id_description_by_name (from Opentarget Tools)

• OpenTargets_get_target_interactions_by_ensemblID (from Opentarget Tools)

• OpenTargets_get_target_safety_profile_by_ensemblID (from Opentarget Tools)

• OpenTargets_get_target_subcell_locations_by_ensembl_ID (from Opentarget Tools)

• OpenTargets_get_target_synonyms_by_ensemblID (from Opentarget Tools)

• OpenTargets_get_target_tractability_by_ensemblID (from Opentarget Tools)

• OpenTargets_get_variant_credible_sets (from Opentarget Genetics Tools)

• OpenTargets_get_variant_info (from Opentarget Genetics Tools)

• OpenTargets_map_any_disease_id_to_all_other_ids (from Idmap Tools)

• OpenTargets_multi_entity_search_by_query_string (from Opentarget Tools)

• OpenTargets_search_category_counts_by_query_string (from Opentarget Tools)

• OpenTargets_search_gwas_studies_by_disease (from Opentarget Genetics Tools)

• OpenTargets_target_disease_evidence (from Opentarget Tools)

OpenTreeTool (4 tools)

Local Tools:

• OpenTree_get_induced_subtree (from Opentree Tools)

• OpenTree_get_mrca (from Opentree Tools)

• OpenTree_get_taxon (from Opentree Tools)

• OpenTree_match_names (from Opentree Tools)

OpentargetToolDrugNameMatch (2 tools)

Local Tools:

• OpenTargets_get_drug_chembId_by_generic_name (from Opentarget Tools)

• OpenTargets_get_drug_id_description_by_name (from Opentarget Tools)

OrphanetTool (5 tools)

Local Tools:

• Orphanet_get_classification (from Orphanet Tools)

• Orphanet_get_disease (from Orphanet Tools)

• Orphanet_get_genes (from Orphanet Tools)

• Orphanet_search_by_name (from Orphanet Tools)

• Orphanet_search_diseases (from Orphanet Tools)

OrthoDBTool (3 tools)

Local Tools:

• OrthoDB_get_group_details (from Orthodb Tools)

• OrthoDB_get_orthologs (from Orthodb Tools)

• OrthoDB_search_groups (from Orthodb Tools)

OxOTool (2 tools)

Local Tools:

• OxO_get_ontology_mappings (from Oxo Tools)

• OxO_search_ontology_mappings (from Oxo Tools)

PANTHERTool (3 tools)

Local Tools:

• PANTHER_enrichment (from Panther Tools)

• PANTHER_gene_info (from Panther Tools)

• PANTHER_ortholog (from Panther Tools)

PDBECompoundTool (2 tools)

Local Tools:

• PDBe_get_compound_structures (from Pdbe Compound Tools)

• PDBe_get_compound_summary (from Pdbe Compound Tools)

PDBeAPIRESTTool (10 tools)

Local Tools:

• pdbe_get_entry_assemblies (from Pdbe Api Tools)

• pdbe_get_entry_experiment (from Pdbe Api Tools)

• pdbe_get_entry_molecules (from Pdbe Api Tools)

• pdbe_get_entry_observed_residues_ratio (from Pdbe Api Tools)

• pdbe_get_entry_publications (from Pdbe Api Tools)

• pdbe_get_entry_quality (from Pdbe Api Tools)

• pdbe_get_entry_related_publications (from Pdbe Api Tools)

• pdbe_get_entry_secondary_structure (from Pdbe Api Tools)

• pdbe_get_entry_status (from Pdbe Api Tools)

• pdbe_get_entry_summary (from Pdbe Api Tools)

PDBeLigandsTool (2 tools)

Local Tools:

• PDBe_get_residue_listing (from Pdbe Ligands Tools)

• PDBe_get_structure_ligands (from Pdbe Ligands Tools)

PDBeSIFTSTool (3 tools)

Local Tools:

• PDBeSIFTS_get_all_structures (from Pdbe Sifts Tools)

• PDBeSIFTS_get_best_structures (from Pdbe Sifts Tools)

• PDBeSIFTS_get_pdb_to_uniprot (from Pdbe Sifts Tools)

PDBeSearchTool (3 tools)

Local Tools:

• PDBeSearch_get_compound (from Pdbe Search Tools)

• PDBeSearch_search_by_organism (from Pdbe Search Tools)

• PDBeSearch_search_structures (from Pdbe Search Tools)

PDBeValidationTool (2 tools)

Local Tools:

• PDBeValidation_get_outlier_residues (from Pdbe Validation Tools)

• PDBeValidation_get_quality_scores (from Pdbe Validation Tools)

PDBe_KB_Tool (4 tools)

Local Tools:

• PDBe_KB_get_interface_residues (from Pdbe Kb Tools)

• PDBe_KB_get_ligand_sites (from Pdbe Kb Tools)

• PDBe_KB_get_summary_stats (from Pdbe Kb Tools)

• PDBe_KB_get_superposition_clusters (from Pdbe Kb Tools)

PMCTool (1 tools)

Local Tools:

• PMC_search_papers (from Pmc Tools)

PRIDERESTTool (3 tools)

Local Tools:

• PRIDE_get_project (from Pride Tools)

• PRIDE_get_project_files (from Pride Tools)

• PRIDE_search_proteomics (from Pride Tools)

PackageTool (163 tools)

Local Tools:

• get_albumentations_info (from Image Processing Tools)

• get_altair_info (from Visualization Tools)

• get_anndata_info (from Single Cell Tools)

• get_arboreto_info (from Genomics Tools)

• get_arxiv_info (from Bioinformatics Core Tools)

• get_ase_info (from Structural Biology Tools)

• get_astropy_info (from Physics Astronomy Tools)

• get_biopandas_info (from Structural Biology Tools)

• get_biopython_info (from Bioinformatics Core Tools)

• get_bioservices_info (from Bioinformatics Core Tools)

• get_biotite_info (from Bioinformatics Core Tools)

• get_bokeh_info (from Visualization Tools)

• get_brian2_info (from Neuroscience Tools)

• get_cartopy_info (from Earth Sciences Tools)

• get_catboost_info (from Machine Learning Tools)

• get_cellpose_info (from Visualization Tools)

• get_cellrank_info (from Single Cell Tools)

• get_cellxgene_census_info (from Genomics Tools)

• get_cftime_info (from Earth Sciences Tools)

• get_chembl_webresource_client_info (from Cheminformatics Tools)

• get_clair3_info (from Genomics Tools)

• get_cobra_info (from Cheminformatics Tools)

• get_cobrapy_info (from Machine Learning Tools)

• get_cooler_info (from Scientific Computing Tools)

• get_cryosparc_tools_info (from Bioinformatics Core Tools)

• get_cupy_info (from Scientific Computing Tools)

• get_cyvcf2_info (from Genomics Tools)

• get_dask_info (from Scientific Computing Tools)

• get_datamol_info (from Cheminformatics Tools)

• get_datashader_info (from Visualization Tools)

• get_deepchem_info (from Cheminformatics Tools)

• get_deeppurpose_info (from Machine Learning Tools)

• get_deeptools_info (from Genomics Tools)

• get_deepxde_info (from Machine Learning Tools)

• get_dendropy_info (from Bioinformatics Core Tools)

• get_descriptastorus_info (from Structural Biology Tools)

• get_diffdock_info (from Structural Biology Tools)

• get_dscribe_info (from Cheminformatics Tools)

• get_elephant_info (from Neuroscience Tools)

• get_episcanpy_info (from Single Cell Tools)

• get_ete3_info (from Bioinformatics Core Tools)

• get_faiss_info (from Machine Learning Tools)

• get_fanc_info (from Bioinformatics Core Tools)

• get_flask_info (from Bioinformatics Core Tools)

• get_flowio_info (from Bioinformatics Core Tools)

• get_flowkit_info (from Bioinformatics Core Tools)

• get_flowutils_info (from Scientific Computing Tools)

• get_freesasa_info (from Structural Biology Tools)

• get_galpy_info (from Physics Astronomy Tools)

• get_geopandas_info (from Earth Sciences Tools)

• get_gget_info (from Bioinformatics Core Tools)

• get_googlesearch_python_info (from Bioinformatics Core Tools)

• get_gseapy_info (from Genomics Tools)

• get_h5py_info (from Scientific Computing Tools)

• get_harmony_pytorch_info (from Machine Learning Tools)

• get_hmmlearn_info (from Machine Learning Tools)

• get_holoviews_info (from Visualization Tools)

• get_htmd_info (from Structural Biology Tools)

• get_igraph_info (from Visualization Tools)

• get_imageio_info (from Image Processing Tools)

• get_imbalanced_learn_info (from Machine Learning Tools)

• get_jcvi_info (from Genomics Tools)

• get_joblib_info (from Scientific Computing Tools)

• get_khmer_info (from Bioinformatics Core Tools)

• get_kipoiseq_info (from Genomics Tools)

• get_lifelines_info (from Bioinformatics Core Tools)

• get_lightgbm_info (from Machine Learning Tools)

• get_loompy_info (from Bioinformatics Core Tools)

• get_mageck_info (from Bioinformatics Core Tools)

• get_matplotlib_info (from Visualization Tools)

• get_mdanalysis_info (from Structural Biology Tools)

• get_mdtraj_info (from Structural Biology Tools)

• get_mne_info (from Neuroscience Tools)

• get_molfeat_info (from Cheminformatics Tools)

• get_molvs_info (from Cheminformatics Tools)

• get_mordred_info (from Cheminformatics Tools)

• get_msprime_info (from Bioinformatics Core Tools)

• get_mudata_info (from Single Cell Tools)

• get_neo_info (from Neuroscience Tools)

• get_netcdf4_info (from Earth Sciences Tools)

• get_networkx_info (from Bioinformatics Core Tools)

• get_nglview_info (from Structural Biology Tools)

• get_nilearn_info (from Neuroscience Tools)

• get_numba_info (from Bioinformatics Core Tools)

• get_numpy_info (from Scientific Computing Tools)

• get_openbabel_info (from Cheminformatics Tools)

• get_openchem_info (from Cheminformatics Tools)

• get_opencv_info (from Visualization Tools)

• get_openmm_info (from Structural Biology Tools)

• get_optlang_info (from Scientific Computing Tools)

• get_optuna_info (from Machine Learning Tools)

• get_palantir_info (from Single Cell Tools)

• get_pandas_info (from Scientific Computing Tools)

• get_patsy_info (from Scientific Computing Tools)

• get_pdbfixer_info (from Bioinformatics Core Tools)

• get_pillow_info (from Image Processing Tools)

• get_plantcv_info (from Visualization Tools)

• get_plip_info (from Bioinformatics Core Tools)

• get_plotly_info (from Visualization Tools)

• get_poliastro_info (from Bioinformatics Core Tools)

• get_poretools_info (from Genomics Tools)

• get_prody_info (from Bioinformatics Core Tools)

• get_pubchempy_info (from Cheminformatics Tools)

• get_pybedtools_info (from Genomics Tools)

• get_pybigwig_info (from Bioinformatics Core Tools)

• get_pydeseq2_info (from Genomics Tools)

• get_pyensembl_info (from Genomics Tools)

• get_pyephem_info (from Physics Astronomy Tools)

• get_pyfaidx_info (from Genomics Tools)

• get_pyfasta_info (from Genomics Tools)

• get_pykalman_info (from Bioinformatics Core Tools)

• get_pyliftover_info (from Genomics Tools)

• get_pymassspec_info (from Bioinformatics Core Tools)

• get_pymed_info (from Bioinformatics Core Tools)

• get_pymzml_info (from Machine Learning Tools)

• get_pypdf2_info (from Bioinformatics Core Tools)

• get_pyranges_info (from Genomics Tools)

• get_pyrosetta_info (from Structural Biology Tools)

• get_pysam_info (from Genomics Tools)

• get_pyscenic_info (from Single Cell Tools)

• get_pyscf_info (from Structural Biology Tools)

• get_pyscreener_info (from Bioinformatics Core Tools)

• get_pytdc_info (from Bioinformatics Core Tools)

• get_python_libsbml_info (from Machine Learning Tools)

• get_pytorch_info (from Machine Learning Tools)

• get_pyvcf_info (from Genomics Tools)

• get_pyvis_info (from Visualization Tools)

• get_qutip_info (from Physics Astronomy Tools)

• get_rasterio_info (from Earth Sciences Tools)

• get_rdkit_info (from Cheminformatics Tools)

• get_reportlab_info (from Genomics Tools)

• get_requests_info (from Bioinformatics Core Tools)

• get_ruptures_info (from Bioinformatics Core Tools)

• get_scanorama_info (from Single Cell Tools)

• get_scanpy_info (from Single Cell Tools)

• get_schnetpack_info (from Machine Learning Tools)

• get_scholarly_info (from Bioinformatics Core Tools)

• get_scikit_bio_info (from Bioinformatics Core Tools)

• get_scikit_image_info (from Visualization Tools)

• get_scikit_learn_info (from Machine Learning Tools)

• get_scipy_info (from Scientific Computing Tools)

• get_scrublet_info (from Single Cell Tools)

• get_scvelo_info (from Single Cell Tools)

• get_scvi_tools_info (from Single Cell Tools)

• get_seaborn_info (from Visualization Tools)

• get_skopt_info (from Machine Learning Tools)

• get_souporcell_info (from Single Cell Tools)

• get_statsmodels_info (from Machine Learning Tools)

• get_sunpy_info (from Physics Astronomy Tools)

• get_sympy_info (from Scientific Computing Tools)

• get_tiledb_info (from Scientific Computing Tools)

• get_tiledbsoma_info (from Single Cell Tools)

• get_torch_geometric_info (from Machine Learning Tools)

• get_tqdm_info (from Scientific Computing Tools)

• get_trackpy_info (from Bioinformatics Core Tools)

• get_tskit_info (from Bioinformatics Core Tools)

• get_umap_learn_info (from Machine Learning Tools)

• get_velocyto_info (from Single Cell Tools)

• get_viennarna_info (from Genomics Tools)

• get_xarray_info (from Scientific Computing Tools)

• get_xesmf_info (from Earth Sciences Tools)

• get_xgboost_info (from Machine Learning Tools)

• get_zarr_info (from Scientific Computing Tools)

PaleobiologyRESTTool (1 tools)

Local Tools:

• Paleobiology_get_fossils (from Paleobiology Tools)

PathwayCommonsTool (2 tools)

Local Tools:

• pc_get_interactions (from Pathway Commons Tools)

• pc_search_pathways (from Pathway Commons Tools)

PfamTool (6 tools)

Local Tools:

• Pfam_get_family_detail (from Pfam Tools)

• Pfam_get_family_proteins (from Pfam Tools)

• Pfam_get_family_proteomes (from Pfam Tools)

• Pfam_get_protein_annotations (from Pfam Tools)

• Pfam_search_clans (from Pfam Tools)

• Pfam_search_families (from Pfam Tools)

PharmGKBTool (7 tools)

Local Tools:

• PharmGKB_get_clinical_annotations (from Pharmgkb Tools)

• PharmGKB_get_dosing_guidelines (from Pharmgkb Tools)

• PharmGKB_get_drug_details (from Pharmgkb Tools)

• PharmGKB_get_gene_details (from Pharmgkb Tools)

• PharmGKB_search_drugs (from Pharmgkb Tools)

• PharmGKB_search_genes (from Pharmgkb Tools)

• PharmGKB_search_variants (from Pharmgkb Tools)

PharosTool (4 tools)

Local Tools:

• Pharos_get_disease_targets (from Pharos Tools)

• Pharos_get_target (from Pharos Tools)

• Pharos_get_tdl_summary (from Pharos Tools)

• Pharos_search_targets (from Pharos Tools)

PlantReactomeTool (3 tools)

Local Tools:

• PlantReactome_get_pathway (from Plant Reactome Tools)

• PlantReactome_list_species (from Plant Reactome Tools)

• PlantReactome_search_pathways (from Plant Reactome Tools)

PomBaseTool (3 tools)

Local Tools:

• PomBase_get_gene (from Pombase Tools)

• PomBase_get_gene_phenotypes (from Pombase Tools)

• PomBase_search_genes (from Pombase Tools)

ProtacDBTool (3 tools)

Local Tools:

• ProtacDB_get_protac (from Protacdb Tools)

• ProtacDB_search_protacs (from Protacdb Tools)

• ProtacDB_search_targets (from Protacdb Tools)

ProteinStructure3DTool (1 tools)

Local Tools:

• visualize_protein_structure_3d (from Protein Structure 3D Tools)

ProteinsAPIRESTTool (10 tools)

Local Tools:

• proteins_api_get_comments (from Proteins Api Tools)

• proteins_api_get_epitopes (from Proteins Api Tools)

• proteins_api_get_features (from Proteins Api Tools)

• proteins_api_get_genome_mappings (from Proteins Api Tools)

• proteins_api_get_protein (from Proteins Api Tools)

• proteins_api_get_proteomics (from Proteins Api Tools)

• proteins_api_get_publications (from Proteins Api Tools)

• proteins_api_get_variants (from Proteins Api Tools)

• proteins_api_get_xrefs (from Proteins Api Tools)

• proteins_api_search (from Proteins Api Tools)

ProteinsPlusRESTTool (5 tools)

Local Tools:

• ProteinsPlus_analyze_binding_site_similarity (from Proteinsplus Tools)

• ProteinsPlus_generate_interaction_diagram (from Proteinsplus Tools)

• ProteinsPlus_predict_binding_sites (from Proteinsplus Tools)

• ProteinsPlus_predict_binding_sites_v3 (from Proteinsplus Tools)

• ProteinsPlus_profile_structure_quality (from Proteinsplus Tools)

ProteomeXchangeTool (2 tools)

Local Tools:

• ProteomeXchange_get_dataset (from Proteomexchange Tools)

• ProteomeXchange_search_datasets (from Proteomexchange Tools)

PubChemBioAssayTool (3 tools)

Local Tools:

• PubChemBioAssay_get_assay (from Pubchem Bioassay Tools)

• PubChemBioAssay_get_assay_summary (from Pubchem Bioassay Tools)

• PubChemBioAssay_search_by_gene (from Pubchem Bioassay Tools)

PubChemRESTTool (18 tools)

Local Tools:

• PubChem_get_CID_by_SMILES (from Pubchem Tools)

• PubChem_get_CID_by_compound_name (from Pubchem Tools)

• PubChem_get_assay_active_compounds (from Pubchem Tools)

• PubChem_get_assay_description (from Pubchem Tools)

• PubChem_get_assay_dose_response (from Pubchem Tools)

• PubChem_get_assay_summary (from Pubchem Tools)

• PubChem_get_assay_targets (from Pubchem Tools)

• PubChem_get_assays_for_compound_active (from Pubchem Tools)

• PubChem_get_associated_patents_by_CID (from Pubchem Tools)

• PubChem_get_compound_2D_image_by_CID (from Pubchem Tools)

• PubChem_get_compound_bioactivity (from Pubchem Tools)

• PubChem_get_compound_properties_by_CID (from Pubchem Tools)

• PubChem_get_compound_synonyms_by_CID (from Pubchem Tools)

• PubChem_get_compound_xrefs_by_CID (from Pubchem Tools)

• PubChem_search_assays_by_target_gene (from Pubchem Tools)

• PubChem_search_assays_by_type (from Pubchem Tools)

• PubChem_search_compounds_by_similarity (from Pubchem Tools)

• PubChem_search_compounds_by_substructure (from Pubchem Tools)

PubChemToxTool (6 tools)

Local Tools:

• PubChemTox_get_acute_effects (from Pubchem Tox Tools)

• PubChemTox_get_carcinogen_classification (from Pubchem Tox Tools)

• PubChemTox_get_ghs_classification (from Pubchem Tox Tools)

• PubChemTox_get_target_organs (from Pubchem Tox Tools)

• PubChemTox_get_toxicity_summary (from Pubchem Tox Tools)

• PubChemTox_get_toxicity_values (from Pubchem Tox Tools)

PubMedGuidelinesTool (1 tools)

Local Tools:

• PubMed_Guidelines_Search (from Unified Guideline Tools)

PubMedRESTTool (5 tools)

Local Tools:

• PubMed_get_article (from Pubmed Tools)

• PubMed_get_cited_by (from Pubmed Tools)

• PubMed_get_links (from Pubmed Tools)

• PubMed_get_related (from Pubmed Tools)

• PubMed_search_articles (from Pubmed Tools)

PubTatorTool (2 tools)

Local Tools:

• PubTator3_EntityAutocomplete (from Pubtator Tools)

• PubTator3_LiteratureSearch (from Pubtator Tools)

PyPIPackageInspector (1 tools)

Local Tools:

• PyPIPackageInspector (from Pypi Package Inspector Tools)

PythonCodeExecutor (1 tools)

Local Tools:

• python_code_executor (from Python Executor Tools)

PythonScriptRunner (1 tools)

Local Tools:

• python_script_runner (from Python Executor Tools)

QuickGOTool (4 tools)

Local Tools:

• QuickGO_annotations_by_gene (from Quickgo Tools)

• QuickGO_annotations_by_goterm (from Quickgo Tools)

• QuickGO_get_term_children (from Quickgo Tools)

• QuickGO_get_term_detail (from Quickgo Tools)

RCSBAdvancedSearchTool (2 tools)

Local Tools:

• RCSBAdvSearch_search_by_motif (from Rcsb Advanced Search Tools)

• RCSBAdvSearch_search_structures (from Rcsb Advanced Search Tools)

RCSBDataTool (3 tools)

Local Tools:

• RCSBData_get_assembly (from Rcsb Data Tools)

• RCSBData_get_entry (from Rcsb Data Tools)

• RCSBData_get_nonpolymer_entity (from Rcsb Data Tools)

RCSBGraphQLTool (3 tools)

Local Tools:

• RCSBGraphQL_get_ligand_info (from Rcsb Graphql Tools)

• RCSBGraphQL_get_polymer_entity (from Rcsb Graphql Tools)

• RCSBGraphQL_get_structure_summary (from Rcsb Graphql Tools)

RCSBSearchTool (1 tools)

Local Tools:

• PDB_search_similar_structures (from Rcsb Search Tools)

RCSBTool (39 tools)

Local Tools:

• get_assembly_info_by_pdb_id (from Rcsb Pdb Tools)

• get_assembly_summary (from Rcsb Pdb Tools)

• get_binding_affinity_by_pdb_id (from Rcsb Pdb Tools)

• get_chem_comp_audit_info (from Rcsb Pdb Tools)

• get_chem_comp_charge_and_ambiguity (from Rcsb Pdb Tools)

• get_citation_info_by_pdb_id (from Rcsb Pdb Tools)

• get_core_refinement_statistics (from Rcsb Pdb Tools)

• get_crystal_growth_conditions_by_pdb_id (from Rcsb Pdb Tools)

• get_crystallization_ph_by_pdb_id (from Rcsb Pdb Tools)

• get_crystallographic_properties_by_pdb_id (from Rcsb Pdb Tools)

• get_ec_number_by_entity_id (from Rcsb Pdb Tools)

• get_em_3d_fitting_and_reconstruction_details (from Rcsb Pdb Tools)

• get_emdb_ids_by_pdb_id (from Rcsb Pdb Tools)

• get_gene_name_by_entity_id (from Rcsb Pdb Tools)

• get_host_organism_by_pdb_id (from Rcsb Pdb Tools)

• get_ligand_bond_count_by_pdb_id (from Rcsb Pdb Tools)

• get_ligand_smiles_by_chem_comp_id (from Rcsb Pdb Tools)

• get_mutation_annotations_by_pdb_id (from Rcsb Pdb Tools)

• get_oligosaccharide_descriptors_by_entity_id (from Rcsb Pdb Tools)

• get_polymer_entity_annotations (from Rcsb Pdb Tools)

• get_polymer_entity_count_by_pdb_id (from Rcsb Pdb Tools)

• get_polymer_entity_ids_by_pdb_id (from Rcsb Pdb Tools)

• get_polymer_entity_type_by_entity_id (from Rcsb Pdb Tools)

• get_polymer_molecular_weight_by_entity_id (from Rcsb Pdb Tools)

• get_protein_classification_by_pdb_id (from Rcsb Pdb Tools)

• get_protein_metadata_by_pdb_id (from Rcsb Pdb Tools)

• get_refinement_resolution_by_pdb_id (from Rcsb Pdb Tools)

• get_release_deposit_dates_by_pdb_id (from Rcsb Pdb Tools)

• get_sequence_by_pdb_id (from Rcsb Pdb Tools)

• get_sequence_lengths_by_pdb_id (from Rcsb Pdb Tools)

• get_sequence_positional_features_by_instance_id (from Rcsb Pdb Tools)

• get_source_organism_by_pdb_id (from Rcsb Pdb Tools)

• get_space_group_by_pdb_id (from Rcsb Pdb Tools)

• get_structure_determination_software_by_pdb_id (from Rcsb Pdb Tools)

• get_structure_title_by_pdb_id (from Rcsb Pdb Tools)

• get_structure_validation_metrics_by_pdb_id (from Rcsb Pdb Tools)

• get_target_cofactor_info (from Rcsb Pdb Tools)

• get_taxonomy_by_pdb_id (from Rcsb Pdb Tools)

• get_uniprot_accession_by_entity_id (from Rcsb Pdb Tools)

RNAcentralGetTool (1 tools)

Local Tools:

• RNAcentral_get_by_accession (from Rnacentral Tools)

RNAcentralSearchTool (1 tools)

Local Tools:

• RNAcentral_search (from Rnacentral Tools)

ReMapRESTTool (1 tools)

Local Tools:

• ReMap_get_transcription_factor_binding (from Remap Tools)

ReactomeAnalysisTool (3 tools)

Local Tools:

• ReactomeAnalysis_pathway_enrichment (from Reactome Analysis Tools)

• ReactomeAnalysis_species_comparison (from Reactome Analysis Tools)

• ReactomeAnalysis_token_result (from Reactome Analysis Tools)

ReactomeContentTool (3 tools)

Local Tools:

• ReactomeContent_get_contained_events (from Reactome Content Tools)

• ReactomeContent_get_enhanced_pathway (from Reactome Content Tools)

• ReactomeContent_search (from Reactome Content Tools)

ReactomeInteractorsTool (3 tools)

Local Tools:

• ReactomeInteractors_get_entity_pathways (from Reactome Interactors Tools)

• ReactomeInteractors_get_protein_interactors (from Reactome Interactors Tools)

• ReactomeInteractors_search_entity (from Reactome Interactors Tools)

ReactomeRESTTool (20 tools)

Local Tools:

• Reactome_get_complex (from Reactome Tools)

• Reactome_get_database_version (from Reactome Tools)

• Reactome_get_diseases (from Reactome Tools)

• Reactome_get_entity_compartment (from Reactome Tools)

• Reactome_get_entity_events (from Reactome Tools)

• Reactome_get_event_ancestors (from Reactome Tools)

• Reactome_get_events_hierarchy (from Reactome Tools)

• Reactome_get_interactor (from Reactome Tools)

• Reactome_get_participant_reference_entities (from Reactome Tools)

• Reactome_get_participants (from Reactome Tools)

• Reactome_get_pathway (from Reactome Tools)

• Reactome_get_pathway_hierarchy (from Reactome Tools)

• Reactome_get_pathway_reactions (from Reactome Tools)

• Reactome_get_pathways_low_entity (from Reactome Tools)

• Reactome_get_reaction (from Reactome Tools)

• Reactome_list_species (from Reactome Tools)

• Reactome_list_top_pathways (from Reactome Tools)

• Reactome_map_uniprot_to_pathways (from Reactome Tools)

• Reactome_map_uniprot_to_reactions (from Reactome Tools)

• Reactome_query_by_ids (from Reactome Tools)

RegulomeDBRESTTool (1 tools)

Local Tools:

• RegulomeDB_query_variant (from Regulomedb Tools)

RemoteTool (14 tools)

Remote Tools:

• boltz2_docking (from Boltz Tools)

• compute_depmap24q2_gene_correlations (from Depmap Tools)

• consult_human_expert (from Expert Feedback Tools)

• get_abstract_from_patent_app_number (from Uspto Downloader Tools)

• get_claims_from_patent_app_number (from Uspto Downloader Tools)

• get_expert_response (from Expert Feedback Tools)

• get_expert_status (from Expert Feedback Tools)

• get_full_text_from_patent_app_number (from Uspto Downloader Tools)

• list_pending_expert_requests (from Expert Feedback Tools)

• mcp_auto_loader_human_expert (from Expert Feedback Tools)

• run_compass_prediction (from Immune Compass Tools)

• run_pinnacle_ppi_retrieval (from Pinnacle Tools)

• run_transcriptformer_embedding_retrieval (from Transcriptformer Tools)

• submit_expert_response (from Expert Feedback Tools)

RfamTool (9 tools)

Local Tools:

• Rfam_accession_to_id (from Rfam Tools)

• Rfam_get_alignment (from Rfam Tools)

• Rfam_get_covariance_model (from Rfam Tools)

• Rfam_get_family (from Rfam Tools)

• Rfam_get_sequence_regions (from Rfam Tools)

• Rfam_get_structure_mapping (from Rfam Tools)

• Rfam_get_tree_data (from Rfam Tools)

• Rfam_id_to_accession (from Rfam Tools)

• Rfam_search_sequence (from Rfam Tools)

RheaTool (3 tools)

Local Tools:

• Rhea_search_by_chebi (from Rhea Tools)

• Rhea_search_by_ec (from Rhea Tools)

• Rhea_search_reactions (from Rhea Tools)

RxNormTool (1 tools)

Local Tools:

• RxNorm_get_drug_names (from Rxnorm Tools)

SASBDBRESTTool (4 tools)

Local Tools:

• SASBDB_get_entries_by_tag (from Sasbdb Tools)

• SASBDB_get_entries_by_uniprot (from Sasbdb Tools)

• SASBDB_get_entry (from Sasbdb Tools)

• SASBDB_list_instruments (from Sasbdb Tools)

SASBDBSearchTool (1 tools)

Local Tools:

• SASBDB_search_entries (from Sasbdb Tools)

SAbDabTool (3 tools)

Local Tools:

• SAbDab_get_structure (from Sabdab Tools)

• SAbDab_get_summary (from Sabdab Tools)

• SAbDab_search_structures (from Sabdab Tools)

SCREENRESTTool (1 tools)

Local Tools:

• SCREEN_get_regulatory_elements (from Screen Tools)

SGDTool (5 tools)

Local Tools:

• SGD_get_gene (from Sgd Tools)

• SGD_get_go_annotations (from Sgd Tools)

• SGD_get_interactions (from Sgd Tools)

• SGD_get_phenotypes (from Sgd Tools)

• SGD_search (from Sgd Tools)

SIGNListGuidelinesTool (1 tools)

Local Tools:

• SIGN_list_guidelines (from Unified Guideline Tools)

SIGNSearchGuidelinesTool (1 tools)

Local Tools:

• SIGN_search_guidelines (from Unified Guideline Tools)

SIMBADAdvancedTool (1 tools)

Local Tools:

• SIMBAD_advanced_query (from Simbad Tools)

SIMBADTool (1 tools)

Local Tools:

• SIMBAD_query_object (from Simbad Tools)

STITCHTool (3 tools)

Local Tools:

• STITCH_get_chemical_protein_interactions (from Stitch Tools)

• STITCH_get_interaction_partners (from Stitch Tools)

• STITCH_resolve_identifier (from Stitch Tools)

STRINGExtTool (2 tools)

Local Tools:

• STRING_get_enrichment (from String Ext Tools)

• STRING_get_functional_annotations (from String Ext Tools)

STRINGRESTTool (4 tools)

Local Tools:

• STRING_functional_enrichment (from Ppi Tools)

• STRING_get_protein_interactions (from Ppi Tools)

• STRING_map_identifiers (from Ppi Tools)

• STRING_ppi_enrichment (from Ppi Tools)

SearchSPLTool (1 tools)

Local Tools:

• DailyMed_search_spls (from Dailymed Tools)

SemanticScholarPDFSnippetsTool (1 tools)

Local Tools:

• SemanticScholar_get_pdf_snippets (from Semantic Scholar Tools)

SemanticScholarTool (1 tools)

Local Tools:

• SemanticScholar_search_papers (from Semantic Scholar Tools)

SmolAgentTool (2 tools)

Local Tools:

• advanced_literature_search_agent (from Smolagent Tools)

• open_deep_research_agent (from Smolagent Tools)

SpecialTool (2 tools)

Local Tools:

• CallAgent (from Special Tools)

• Finish (from Special Tools)

SpliceAITool (3 tools)

Local Tools:

• SpliceAI_get_max_delta (from Spliceai Tools)

• SpliceAI_predict_pangolin (from Spliceai Tools)

• SpliceAI_predict_splice (from Spliceai Tools)

SurvivalTool (3 tools)

Local Tools:

• Survival_cox_regression (from Survival Tools)

• Survival_kaplan_meier (from Survival Tools)

• Survival_log_rank_test (from Survival Tools)

SwissDockTool (3 tools)

Local Tools:

• SwissDock_check_job_status (from Swissdock Tools)

• SwissDock_dock_ligand (from Swissdock Tools)

• SwissDock_retrieve_results (from Swissdock Tools)

SwissModelTool (2 tools)

Local Tools:

• SwissModel_get_models (from Swissmodel Tools)

• SwissModel_get_summary (from Swissmodel Tools)

SynBioHubTool (3 tools)

Local Tools:

• SynBioHub_get_collections (from Synbiohub Tools)

• SynBioHub_get_part (from Synbiohub Tools)

• SynBioHub_search_parts (from Synbiohub Tools)

TIMERTool (3 tools)

Local Tools:

• TIMER2_gene_correlation (from Timer Tools)

• TIMER2_immune_estimation (from Timer Tools)

• TIMER2_survival_association (from Timer Tools)

TRIPDatabaseTool (1 tools)

Local Tools:

• TRIP_Database_Guidelines_Search (from Unified Guideline Tools)

TextDownloadTool (1 tools)

Local Tools:

• download_text_content (from File Download Tools)

TheraSAbDabTool (3 tools)

Local Tools:

• TheraSAbDab_get_all_therapeutics (from Therasabdab Tools)

• TheraSAbDab_search_by_target (from Therasabdab Tools)

• TheraSAbDab_search_therapeutics (from Therasabdab Tools)

ThreeDBeaconsTool (2 tools)

Local Tools:

• ThreeDBeacons_get_structure_summary (from Three D Beacons Tools)

• ThreeDBeacons_get_structures (from Three D Beacons Tools)

ToolFinderEmbedding (2 tools)

Local Tools:

• Tool_Finder (from Finder Tools)

• Tool_RAG (from Finder Tools)

ToolFinderKeyword (1 tools)

Local Tools:

• Tool_Finder_Keyword (from Finder Tools)

ToolFinderLLM (1 tools)

Local Tools:

• Tool_Finder_LLM (from Finder Tools)

UCSCEpigenomicsTool (3 tools)

Local Tools:

• UCSC_get_cpg_islands (from Epigenomics Tools)

• UCSC_get_encode_cCREs (from Epigenomics Tools)

• UCSC_get_tf_binding_clusters (from Epigenomics Tools)

UCSCGenomeTool (3 tools)

Local Tools:

• UCSC_get_sequence (from Ucsc Genome Tools)

• UCSC_get_track (from Ucsc Genome Tools)

• UCSC_search (from Ucsc Genome Tools)

UMLSRESTTool (5 tools)

Local Tools:

• icd_search_codes (from Umls Tools)

• loinc_search_codes (from Umls Tools)

• snomed_search_concepts (from Umls Tools)

• umls_get_concept_details (from Umls Tools)

• umls_search_concepts (from Umls Tools)

URLHTMLTagTool (1 tools)

Local Tools:

• get_webpage_title (from Url Fetch Tools)

URLToPDFTextTool (1 tools)

Local Tools:

• get_webpage_text_from_url (from Url Fetch Tools)

USPTOOpenDataPortalTool (6 tools)

Local Tools:

• get_associated_documents_metadata (from Uspto Tools)

• get_patent_application_metadata (from Uspto Tools)

• get_patent_continuity_data (from Uspto Tools)

• get_patent_foreign_priority_data (from Uspto Tools)

• get_patent_overview_by_text_query (from Uspto Tools)

• get_patent_term_adjustment_data (from Uspto Tools)

UniChemTool (2 tools)

Local Tools:

• UniChem_list_sources (from Unichem Tools)

• UniChem_search_compound (from Unichem Tools)

UniParcTool (2 tools)

Local Tools:

• UniParc_get_entry (from Uniparc Tools)

• UniParc_search (from Uniparc Tools)

UniProtIDMappingTool (4 tools)

Local Tools:

• UniProtIDMap_convert_ids (from Uniprot Idmapping Tools)

• UniProtIDMap_gene_to_uniprot (from Uniprot Idmapping Tools)

• UniProtIDMap_list_databases (from Uniprot Idmapping Tools)

• UniProtIDMap_to_pdb (from Uniprot Idmapping Tools)

UniProtLocationsTool (2 tools)

Local Tools:

• UniProtLocations_get_location (from Uniprot Locations Tools)

• UniProtLocations_search (from Uniprot Locations Tools)

UniProtRESTTool (17 tools)

Local Tools:

• UniProt_get_alternative_names_by_accession (from Uniprot Tools)

• UniProt_get_disease_variants_by_accession (from Uniprot Tools)

• UniProt_get_entry_by_accession (from Uniprot Tools)

• UniProt_get_function_by_accession (from Uniprot Tools)

• UniProt_get_isoform_ids_by_accession (from Uniprot Tools)

• UniProt_get_organism_by_accession (from Uniprot Tools)

• UniProt_get_proteome (from Uniprot Tools)

• UniProt_get_ptm_processing_by_accession (from Uniprot Tools)

• UniProt_get_recommended_name_by_accession (from Uniprot Tools)

• UniProt_get_sequence_by_accession (from Uniprot Tools)

• UniProt_get_subcellular_location_by_accession (from Uniprot Tools)

• UniProt_get_uniparc_entry (from Uniprot Tools)

• UniProt_get_uniref_cluster (from Uniprot Tools)

• UniProt_id_mapping (from Uniprot Tools)

• UniProt_search (from Uniprot Tools)

• UniProt_search_uniparc (from Uniprot Tools)

• UniProt_search_uniref (from Uniprot Tools)

UniProtRefTool (6 tools)

Local Tools:

• UniProtRef_get_disease (from Uniprot Ref Tools)

• UniProtRef_get_keyword (from Uniprot Ref Tools)

• UniProtRef_get_proteome (from Uniprot Ref Tools)

• UniProtRef_search_diseases (from Uniprot Ref Tools)

• UniProtRef_search_keywords (from Uniprot Ref Tools)

• UniProtRef_search_proteomes (from Uniprot Ref Tools)

UniProtTaxonomyTool (2 tools)

Local Tools:

• UniProtTaxonomy_get_taxon (from Uniprot Taxonomy Tools)

• UniProtTaxonomy_search (from Uniprot Taxonomy Tools)

UniRefTool (2 tools)

Local Tools:

• UniRef_get_cluster (from Uniref Tools)

• UniRef_search_clusters (from Uniref Tools)

UnpaywallTool (1 tools)

Local Tools:

• Unpaywall_check_oa_status (from Unpaywall Tools)

WFGYPromptBundleTool (1 tools)

Local Tools:

• WFGY_triage_llm_rag_failure (from Wfgy Promptbundle Tools)

WHOGuidelineFullTextTool (1 tools)

Local Tools:

• WHO_Guideline_Full_Text (from Unified Guideline Tools)

WHOGuidelinesTool (1 tools)

Local Tools:

• WHO_Guidelines_Search (from Unified Guideline Tools)

WebAPIDocumentationSearchTool (1 tools)

Local Tools:

• web_api_documentation_search (from Web Search Tools)

WebSearchTool (1 tools)

Local Tools:

• web_search (from Web Search Tools)

WikiPathwaysExtTool (2 tools)

Local Tools:

• WikiPathways_find_pathways_by_gene (from Wikipathways Ext Tools)

• WikiPathways_get_pathway_genes (from Wikipathways Ext Tools)

WikiPathwaysGetTool (1 tools)

Local Tools:

• WikiPathways_get_pathway (from Wikipathways Tools)

WikiPathwaysSearchTool (1 tools)

Local Tools:

• WikiPathways_search (from Wikipathways Tools)

WikidataSPARQLTool (1 tools)

Local Tools:

• Wikidata_SPARQL_query (from Wikidata Sparql Tools)

WikipediaContentTool (1 tools)

Local Tools:

• Wikipedia_get_content (from Wikipedia Tools)

WikipediaSearchTool (1 tools)

Local Tools:

• Wikipedia_search (from Wikipedia Tools)

WikipediaSummaryTool (1 tools)

Local Tools:

• Wikipedia_get_summary (from Wikipedia Tools)

WoRMSRESTTool (1 tools)

Local Tools:

• WoRMS_search_species (from Worms Tools)

WormBaseTool (3 tools)

Local Tools:

• WormBase_get_expression (from Wormbase Tools)

• WormBase_get_gene (from Wormbase Tools)

• WormBase_get_phenotypes (from Wormbase Tools)

XMLTool (19 tools)

Local Tools:

• drugbank_filter_drugs_by_name (from Xml Tools)

• drugbank_get_drug_basic_info_by_drug_name_or_id (from Xml Tools)

• drugbank_get_drug_chemistry_by_drug_name_or_drugbank_id (from Xml Tools)

• drugbank_get_drug_desc_pharmacology_by_moa (from Xml Tools)

• drugbank_get_drug_interactions_by_drug_name_or_id (from Xml Tools)

• drugbank_get_drug_name_and_description_by_indication (from Xml Tools)

• drugbank_get_drug_name_and_description_by_pathway_name (from Xml Tools)

• drugbank_get_drug_name_and_description_by_target_name (from Xml Tools)

• drugbank_get_drug_products_by_name_or_drugbank_id (from Xml Tools)

• drugbank_get_drug_references_by_drug_name_or_id (from Xml Tools)

• drugbank_get_indications_by_drug_name_or_drugbank_id (from Xml Tools)

• drugbank_get_pathways_reactions_by_drug_or_id (from Xml Tools)

• drugbank_get_pharmacology_by_drug_name_or_drugbank_id (from Xml Tools)

• drugbank_get_safety_by_drug_name_or_drugbank_id (from Xml Tools)

• drugbank_get_targets_by_drug_name_or_drugbank_id (from Xml Tools)

• mesh_get_subjects_by_pharmacological_action (from Xml Tools)

• mesh_get_subjects_by_subject_id (from Xml Tools)

• mesh_get_subjects_by_subject_name (from Xml Tools)

• mesh_get_subjects_by_subject_scope_or_definition (from Xml Tools)

ZenodoRESTTool (5 tools)

Local Tools:

• Zenodo_get_license (from Zenodo Tools)

• Zenodo_get_record (from Zenodo Tools)

• Zenodo_get_record_files (from Zenodo Tools)

• Zenodo_list_licenses (from Zenodo Tools)

• Zenodo_search_records (from Zenodo Tools)

dbSNPGetFrequencies (1 tools)

Local Tools:

• dbsnp_get_frequencies (from Dbsnp Tools)

dbSNPGetVariantByRsID (1 tools)

Local Tools:

• dbsnp_get_variant_by_rsid (from Dbsnp Tools)

dbSNPSearchByGene (1 tools)

Local Tools:

• dbsnp_search_by_gene (from Dbsnp Tools)

gnomADGetGeneConstraints (1 tools)

Local Tools:

• gnomad_get_gene_constraints (from Gnomad Tools)

gnomADGraphQLQueryTool (9 tools)

Local Tools:

• gnomad_get_gene (from Gnomad Tools)

• gnomad_get_region (from Gnomad Tools)

• gnomad_get_sv_by_gene (from Gnomad Tools)

• gnomad_get_sv_by_region (from Gnomad Tools)

• gnomad_get_sv_detail (from Gnomad Tools)

• gnomad_get_transcript (from Gnomad Tools)

• gnomad_get_variant (from Gnomad Tools)

• gnomad_search_genes (from Gnomad Tools)

• gnomad_search_variants (from Gnomad Tools)

miRNAGetTool (6 tools)

Local Tools:

• LNCipedia_get_lncrna (from Lncrna Tools)

• LNCipedia_get_lncrna_publications (from Lncrna Tools)

• LNCipedia_get_lncrna_xrefs (from Lncrna Tools)

• miRBase_get_mirna (from Mirna Tools)

• miRBase_get_mirna_publications (from Mirna Tools)

• miRBase_get_mirna_xrefs (from Mirna Tools)

miRNASearchTool (3 tools)

Local Tools:

• LNCipedia_search_lncrna (from Lncrna Tools)

• LNCipedia_search_ncrna_by_type (from Lncrna Tools)

• miRBase_search_mirna (from Mirna Tools)

Quick Tool Search

Use your browser’s search function (Ctrl+F / Cmd+F) to quickly find:

• Tool Name: Search for the exact tool name

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Each configuration file has its own dedicated page with detailed tool information and collapsible sections.