Brenda Tools

Configuration File: brenda_tools.json Tool Type: Local Tools Count: 4

This page contains all tools defined in the brenda_tools.json configuration file.

Available Tools

BRENDA_get_enzyme_info (Type: BRENDATool)

Get general enzyme information from BRENDA by EC number. Returns enzyme name, systematic name, an…

BRENDA_get_enzyme_info tool specification

Tool Information:

  • Name: BRENDA_get_enzyme_info

  • Type: BRENDATool

  • Description: Get general enzyme information from BRENDA by EC number. Returns enzyme name, systematic name, and catalyzed reaction. Requires free BRENDA account (register at brenda-enzymes.org/register.php).

Parameters:

  • operation (string) (required) Operation type (fixed: get_enzyme_info)

  • ec_number (string) (required) EC number (e.g., 1.1.1.1)

Example Usage:

query = {
    "name": "BRENDA_get_enzyme_info",
    "arguments": {
        "operation": "example_value",
        "ec_number": "example_value"
    }
}
result = tu.run(query)

BRENDA_get_inhibitors (Type: BRENDATool)

Get enzyme inhibitor data from BRENDA via SPARQL endpoint. Returns Ki (inhibition constant) value…

BRENDA_get_inhibitors tool specification

Tool Information:

  • Name: BRENDA_get_inhibitors

  • Type: BRENDATool

  • Description: Get enzyme inhibitor data from BRENDA via SPARQL endpoint. Returns Ki (inhibition constant) values in mM with inhibitor names and organisms. Lower Ki means more potent inhibition. No authentication required.

Parameters:

  • operation (string) (required) Operation type (fixed: get_inhibitors)

  • ec_number (string) (required) EC number

  • organism (string) (optional) Optional organism filter

Example Usage:

query = {
    "name": "BRENDA_get_inhibitors",
    "arguments": {
        "operation": "example_value",
        "ec_number": "example_value"
    }
}
result = tu.run(query)

BRENDA_get_kcat (Type: BRENDATool)

Get kcat (turnover number) values from BRENDA enzyme database. kcat is the maximum number of subs…

BRENDA_get_kcat tool specification

Tool Information:

  • Name: BRENDA_get_kcat

  • Type: BRENDATool

  • Description: Get kcat (turnover number) values from BRENDA enzyme database. kcat is the maximum number of substrate molecules converted to product per enzyme per second. Returns values in 1/s. Requires free BRENDA account.

Parameters:

  • operation (string) (required) Operation type (fixed: get_kcat)

  • ec_number (string) (required) EC number

  • organism (string) (optional) Optional organism filter

Example Usage:

query = {
    "name": "BRENDA_get_kcat",
    "arguments": {
        "operation": "example_value",
        "ec_number": "example_value"
    }
}
result = tu.run(query)

BRENDA_get_km (Type: BRENDATool)

Get Km (Michaelis constant) values from BRENDA enzyme database. Km indicates substrate affinity -…

BRENDA_get_km tool specification

Tool Information:

  • Name: BRENDA_get_km

  • Type: BRENDATool

  • Description: Get Km (Michaelis constant) values from BRENDA enzyme database. Km indicates substrate affinity - lower Km means higher affinity. Returns values in mM with organism and substrate information. Requires free BRENDA account (register at brenda-enzymes.org/register.php).

Parameters:

  • operation (string) (required) Operation type (fixed: get_km)

  • ec_number (string) (required) EC number (e.g., 1.1.1.1 for alcohol dehydrogenase, 2.7.1.1 for hexokinase)

  • organism (string) (optional) Optional organism filter (e.g., ‘Homo sapiens’, ‘Escherichia coli’)

Example Usage:

query = {
    "name": "BRENDA_get_km",
    "arguments": {
        "operation": "example_value",
        "ec_number": "example_value"
    }
}
result = tu.run(query)