Idmap Tools

Configuration File: idmap_tools.json Tool Type: Local Tools Count: 3

This page contains all tools defined in the idmap_tools.json configuration file.

Available Tools

OpenTargets_get_disease_ids_by_efoId (Type: OpenTarget)

Given an EFO ID, retrieve all cross-referenced external disease IDs including MONDO, OMIM, MeSH, …

OpenTargets_get_disease_ids_by_efoId tool specification

Tool Information:

  • Name: OpenTargets_get_disease_ids_by_efoId

  • Type: OpenTarget

  • Description: Given an EFO ID, retrieve all cross-referenced external disease IDs including MONDO, OMIM, MeSH, MedDRA, NCIt, ICD10, Orphanet, UMLS.

Parameters:

  • efoId (string) (optional) The EFO ID of the disease or phenotype.

Example Usage:

query = {
    "name": "OpenTargets_get_disease_ids_by_efoId",
    "arguments": {
    }
}
result = tu.run(query)

OpenTargets_get_disease_ids_by_name (Type: OpenTarget)

Given a disease or phenotype name, find all cross-referenced external IDs (e.g., OMIM, MONDO, MeS…

OpenTargets_get_disease_ids_by_name tool specification

Tool Information:

  • Name: OpenTargets_get_disease_ids_by_name

  • Type: OpenTarget

  • Description: Given a disease or phenotype name, find all cross-referenced external IDs (e.g., OMIM, MONDO, MeSH, ICD10, UMLS, MedDRA, NCIt, Orphanet) using Open Targets GraphQL API.

Parameters:

  • name (string) (optional) The name of the disease or phenotype (e.g. ‘rheumatoid arthritis’).

Example Usage:

query = {
    "name": "OpenTargets_get_disease_ids_by_name",
    "arguments": {
    }
}
result = tu.run(query)

OpenTargets_map_any_disease_id_to_all_other_ids (Type: OpenTarget)

Given any known disease or phenotype ID (EFO, OMIM, MONDO, UMLS, ICD10, MedDRA, etc.), return all…

OpenTargets_map_any_disease_id_to_all_other_ids tool specification

Tool Information:

  • Name: OpenTargets_map_any_disease_id_to_all_other_ids

  • Type: OpenTarget

  • Description: Given any known disease or phenotype ID (EFO, OMIM, MONDO, UMLS, ICD10, MedDRA, etc.), return all known cross-referenced IDs including the EFO ID.

Parameters:

  • inputId (string) (optional) Any known disease ID (e.g. OMIM:604302, UMLS:C0003873, ICD10:M05, EFO_0000685, etc.)

Example Usage:

query = {
    "name": "OpenTargets_map_any_disease_id_to_all_other_ids",
    "arguments": {
    }
}
result = tu.run(query)