Pubmed Tools

Configuration File: pubmed_tools.json Tool Type: Local Tools Count: 1

This page contains all tools defined in the pubmed_tools.json configuration file.

Available Tools

PubMed_search_articles (Type: PubMedTool)

Search PubMed using NCBI E-utilities (esearch + esummary) and return articles. Returns articles w…

PubMed_search_articles tool specification

Tool Information:

  • Name: PubMed_search_articles

  • Type: PubMedTool

  • Description: Search PubMed using NCBI E-utilities (esearch + esummary) and return articles. Returns articles with title, journal, year, DOI, and PubMed URL.

Parameters:

  • query (string) (required) Search query for PubMed articles. Use keywords separated by spaces to refine your search.

  • limit (integer) (optional) Number of articles to return. This sets the maximum number of articles retrieved from PubMed.

  • api_key (string) (optional) Optional NCBI API key for higher rate limits. Get your free key at https://www.ncbi.nlm.nih.gov/account/

Example Usage:

query = {
    "name": "PubMed_search_articles",
    "arguments": {
        "query": "example_value"
    }
}
result = tu.run(query)