Blast Tools

Configuration File: blast_tools.json Tool Type: Local Tools Count: 2

This page contains all tools defined in the blast_tools.json configuration file.

Available Tools

BLAST_nucleotide_search (Type: NCBIBlastTool)

Search nucleotide sequences using NCBI BLAST blastn against nucleotide databases

BLAST_nucleotide_search tool specification

Tool Information:

  • Name: BLAST_nucleotide_search

  • Type: NCBIBlastTool

  • Description: Search nucleotide sequences using NCBI BLAST blastn against nucleotide databases

Parameters:

  • sequence (string) (required) DNA sequence to search

  • database (string) (optional) Database (nt, est, etc.)

  • expect (number) (optional) E-value threshold

  • hitlist_size (integer) (optional) Max hits to return

Example Usage:

query = {
    "name": "BLAST_nucleotide_search",
    "arguments": {
        "sequence": "example_value"
    }
}
result = tu.run(query)

BLAST_protein_search (Type: NCBIBlastTool)

Search protein sequences using NCBI BLAST blastp against protein databases

BLAST_protein_search tool specification

Tool Information:

  • Name: BLAST_protein_search

  • Type: NCBIBlastTool

  • Description: Search protein sequences using NCBI BLAST blastp against protein databases

Parameters:

  • sequence (string) (required) Protein sequence to search

  • database (string) (optional) Database (nr, swissprot, etc.)

  • expect (number) (optional) No description

  • hitlist_size (integer) (optional) No description

Example Usage:

query = {
    "name": "BLAST_protein_search",
    "arguments": {
        "sequence": "example_value"
    }
}
result = tu.run(query)