Gtex Tools

Configuration File: gtex_tools.json Tool Type: Local Tools Count: 2

This page contains all tools defined in the gtex_tools.json configuration file.

Available Tools

GTEx_get_expression_summary (Type: GTExExpressionTool)

Summarize tissue-specific expression (e.g., median TPM) for a gene across GTEx tissues. Use to pr…

GTEx_get_expression_summary tool specification

Tool Information:

  • Name: GTEx_get_expression_summary

  • Type: GTExExpressionTool

  • Description: Summarize tissue-specific expression (e.g., median TPM) for a gene across GTEx tissues. Use to profile baseline expression patterns for targets/biomarkers.

Parameters:

  • ensembl_gene_id (string) (required) Ensembl gene identifier (e.g., ‘ENSG00000141510’ for TP53).

Example Usage:

query = {
    "name": "GTEx_get_expression_summary",
    "arguments": {
        "ensembl_gene_id": "example_value"
    }
}
result = tu.run(query)

GTEx_query_eqtl (Type: GTExEQTLTool)

Query GTEx single-tissue eQTL associations for a gene. Use to identify regulatory variants (varia…

GTEx_query_eqtl tool specification

Tool Information:

  • Name: GTEx_query_eqtl

  • Type: GTExEQTLTool

  • Description: Query GTEx single-tissue eQTL associations for a gene. Use to identify regulatory variants (variantId, pValue, slope) relevant to expression regulation.

Parameters:

  • ensembl_gene_id (string) (required) Ensembl gene identifier (e.g., ‘ENSG00000141510’).

  • page (integer) (optional) Page number (1-based).

  • size (integer) (optional) Number of records per page (1–100).

Example Usage:

query = {
    "name": "GTEx_query_eqtl",
    "arguments": {
        "ensembl_gene_id": "example_value"
    }
}
result = tu.run(query)