Deepgo Tools

Configuration File: deepgo_tools.json Tool Type: Local Tools Count: 1

This page contains all tools defined in the deepgo_tools.json configuration file.

Available Tools

DeepGO_predict_function (Type: DeepGOTool)

Predict protein function from amino acid sequence using deep learning. Returns Gene Ontology (GO)…

DeepGO_predict_function tool specification

Tool Information:

  • Name: DeepGO_predict_function

  • Type: DeepGOTool

  • Description: Predict protein function from amino acid sequence using deep learning. Returns Gene Ontology (GO) term predictions for Biological Process, Molecular Function, and Cellular Component with confidence scores. Uses DeepGOPlus method - 600x faster than sequence alignment approaches.

Parameters:

  • sequence (string) (required) Protein sequence (10-5000 amino acids, standard 20 AAs)

  • name (string) (optional) Optional name for the protein

  • threshold (number) (optional) Confidence threshold 0.1-1.0 (default: 0.3)

Example Usage:

query = {
    "name": "DeepGO_predict_function",
    "arguments": {
        "sequence": "example_value"
    }
}
result = tu.run(query)