Screen Tools

Configuration File: screen_tools.json Tool Type: Local Tools Count: 1

This page contains all tools defined in the screen_tools.json configuration file.

Available Tools

SCREEN_get_regulatory_elements (Type: SCREENRESTTool)

Get candidate cis-regulatory elements (cCREs) from SCREEN database for specific genomic regions

SCREEN_get_regulatory_elements tool specification

Tool Information:

  • Name: SCREEN_get_regulatory_elements

  • Type: SCREENRESTTool

  • Description: Get candidate cis-regulatory elements (cCREs) from SCREEN database for specific genomic regions

Parameters:

  • gene_name (string) (required) Gene symbol to search for regulatory elements (e.g., BRCA1, TP53)

  • element_type (string) (optional) Type of regulatory element (promoter, enhancer, insulator)

  • limit (integer) (optional) Number of results to return

Example Usage:

query = {
    "name": "SCREEN_get_regulatory_elements",
    "arguments": {
        "gene_name": "example_value"
    }
}
result = tu.run(query)