Disease Target Score Tools

Configuration File: disease_target_score_tools.json Tool Type: Local Tools Count: 10

This page contains all tools defined in the disease_target_score_tools.json configuration file.

Available Tools

cancer_biomarkers_disease_target_score (Type: DiseaseTargetScoreTool)

Extract disease-target association scores from cancer biomarkers data. This includes known cancer…

cancer_biomarkers_disease_target_score tool specification

Tool Information:

• Name: cancer_biomarkers_disease_target_score

• Type: DiseaseTargetScoreTool

• Description: Extract disease-target association scores from cancer biomarkers data. This includes known cancer biomarkers.

Parameters:

• efoId (string) (required) The EFO (Experimental Factor Ontology) ID of the disease, e.g., ‘EFO_0000339’ for chronic myelogenous leukemia

• pageSize (integer) (optional) Number of results per page (default: 100, max: 100)

Example Usage:

query = {
    "name": "cancer_biomarkers_disease_target_score",
    "arguments": {
        "efoId": "example_value"
    }
}
result = tu.run(query)

cancer_gene_census_disease_target_score (Type: DiseaseTargetScoreTool)

Extract disease-target association scores from Cancer Gene Census. This provides curated cancer g…

cancer_gene_census_disease_target_score tool specification

Tool Information:

• Name: cancer_gene_census_disease_target_score

• Type: DiseaseTargetScoreTool

• Description: Extract disease-target association scores from Cancer Gene Census. This provides curated cancer gene data.

Parameters:

• efoId (string) (required) The EFO (Experimental Factor Ontology) ID of the disease, e.g., ‘EFO_0000339’ for chronic myelogenous leukemia

• pageSize (integer) (optional) Number of results per page (default: 100, max: 100)

Example Usage:

query = {
    "name": "cancer_gene_census_disease_target_score",
    "arguments": {
        "efoId": "example_value"
    }
}
result = tu.run(query)

chembl_disease_target_score (Type: DiseaseTargetScoreTool)

Extract disease-target association scores specifically from ChEMBL database. ChEMBL provides bioa…

chembl_disease_target_score tool specification

Tool Information:

• Name: chembl_disease_target_score

• Type: DiseaseTargetScoreTool

• Description: Extract disease-target association scores specifically from ChEMBL database. ChEMBL provides bioactivity data for drug-target interactions.

Parameters:

• efoId (string) (required) The EFO (Experimental Factor Ontology) ID of the disease, e.g., ‘EFO_0000339’ for chronic myelogenous leukemia

• pageSize (integer) (optional) Number of results per page (default: 100, max: 100)

Example Usage:

query = {
    "name": "chembl_disease_target_score",
    "arguments": {
        "efoId": "example_value"
    }
}
result = tu.run(query)

disease_target_score (Type: DiseaseTargetScoreTool)

Extract disease-target association scores from a specific data source using GraphQL API. This too…

disease_target_score tool specification

Tool Information:

• Name: disease_target_score

• Type: DiseaseTargetScoreTool

• Description: Extract disease-target association scores from a specific data source using GraphQL API. This tool retrieves all targets associated with a disease and their scores from a specified datasource (e.g., chembl, eva, cancer_gene_census, etc.).

Parameters:

• efoId (string) (required) The EFO (Experimental Factor Ontology) ID of the disease, e.g., ‘EFO_0000339’ for chronic myelogenous leukemia

• datasourceId (string) (required) The datasource ID to extract scores from. Available options: ‘chembl’, ‘eva’, ‘eva_somatic’, ‘cancer_gene_census’, ‘cancer_biomarkers’, ‘europepmc’, ‘expression_atlas’, ‘genomics_england’, ‘impc’, ‘reactome’, ‘uniprot_literature’, ‘uniprot_variants’

• pageSize (integer) (optional) Number of results per page (default: 100, max: 100)

Example Usage:

query = {
    "name": "disease_target_score",
    "arguments": {
        "efoId": "example_value",
        "datasourceId": "example_value"
    }
}
result = tu.run(query)

europepmc_disease_target_score (Type: DiseaseTargetScoreTool)

Extract disease-target association scores from Europe PMC literature. This includes literature-ba…

europepmc_disease_target_score tool specification

Tool Information:

• Name: europepmc_disease_target_score

• Type: DiseaseTargetScoreTool

• Description: Extract disease-target association scores from Europe PMC literature. This includes literature-based evidence.

Parameters:

• efoId (string) (required) The EFO (Experimental Factor Ontology) ID of the disease, e.g., ‘EFO_0000339’ for chronic myelogenous leukemia

• pageSize (integer) (optional) Number of results per page (default: 100, max: 100)

Example Usage:

query = {
    "name": "europepmc_disease_target_score",
    "arguments": {
        "efoId": "example_value"
    }
}
result = tu.run(query)

eva_disease_target_score (Type: DiseaseTargetScoreTool)

Extract disease-target association scores from EVA (European Variation Archive). EVA provides gen…

eva_disease_target_score tool specification

Tool Information:

• Name: eva_disease_target_score

• Type: DiseaseTargetScoreTool

• Description: Extract disease-target association scores from EVA (European Variation Archive). EVA provides genetic variant data.

Parameters:

• efoId (string) (required) The EFO (Experimental Factor Ontology) ID of the disease, e.g., ‘EFO_0000339’ for chronic myelogenous leukemia

• pageSize (integer) (optional) Number of results per page (default: 100, max: 100)

Example Usage:

query = {
    "name": "eva_disease_target_score",
    "arguments": {
        "efoId": "example_value"
    }
}
result = tu.run(query)

eva_somatic_disease_target_score (Type: DiseaseTargetScoreTool)

Extract disease-target association scores from EVA somatic mutations. This includes somatic varia…

eva_somatic_disease_target_score tool specification

Tool Information:

• Name: eva_somatic_disease_target_score

• Type: DiseaseTargetScoreTool

• Description: Extract disease-target association scores from EVA somatic mutations. This includes somatic variant data.

Parameters:

• efoId (string) (required) The EFO (Experimental Factor Ontology) ID of the disease, e.g., ‘EFO_0000339’ for chronic myelogenous leukemia

• pageSize (integer) (optional) Number of results per page (default: 100, max: 100)

Example Usage:

query = {
    "name": "eva_somatic_disease_target_score",
    "arguments": {
        "efoId": "example_value"
    }
}
result = tu.run(query)

expression_atlas_disease_target_score (Type: DiseaseTargetScoreTool)

Extract disease-target association scores from Expression Atlas. This provides gene expression data.

expression_atlas_disease_target_score tool specification

Tool Information:

• Name: expression_atlas_disease_target_score

• Type: DiseaseTargetScoreTool

• Description: Extract disease-target association scores from Expression Atlas. This provides gene expression data.

Parameters:

• efoId (string) (required) The EFO (Experimental Factor Ontology) ID of the disease, e.g., ‘EFO_0000339’ for chronic myelogenous leukemia

• pageSize (integer) (optional) Number of results per page (default: 100, max: 100)

Example Usage:

query = {
    "name": "expression_atlas_disease_target_score",
    "arguments": {
        "efoId": "example_value"
    }
}
result = tu.run(query)

genomics_england_disease_target_score (Type: DiseaseTargetScoreTool)

Extract disease-target association scores from Genomics England data. This includes clinical geno…

genomics_england_disease_target_score tool specification

Tool Information:

• Name: genomics_england_disease_target_score

• Type: DiseaseTargetScoreTool

• Description: Extract disease-target association scores from Genomics England data. This includes clinical genomics evidence.

Parameters:

• efoId (string) (required) The EFO (Experimental Factor Ontology) ID of the disease, e.g., ‘EFO_0000339’ for chronic myelogenous leukemia

• pageSize (integer) (optional) Number of results per page (default: 100, max: 100)

Example Usage:

query = {
    "name": "genomics_england_disease_target_score",
    "arguments": {
        "efoId": "example_value"
    }
}
result = tu.run(query)

reactome_disease_target_score (Type: DiseaseTargetScoreTool)

Extract disease-target association scores from Reactome pathway data. This includes pathway-based…

reactome_disease_target_score tool specification

Tool Information:

• Name: reactome_disease_target_score

• Type: DiseaseTargetScoreTool

• Description: Extract disease-target association scores from Reactome pathway data. This includes pathway-based evidence.

Parameters:

• efoId (string) (required) The EFO (Experimental Factor Ontology) ID of the disease, e.g., ‘EFO_0000339’ for chronic myelogenous leukemia

• pageSize (integer) (optional) Number of results per page (default: 100, max: 100)

Example Usage:

query = {
    "name": "reactome_disease_target_score",
    "arguments": {
        "efoId": "example_value"
    }
}
result = tu.run(query)

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