Geo Tools

Configuration File: geo_tools.json Tool Type: Local Tools Count: 1

This page contains all tools defined in the geo_tools.json configuration file.

Available Tools

GEO_search_expression_data (Type: GEORESTTool)

Search gene expression data from the GEO database. GEO is a public repository that archives and f…

GEO_search_expression_data tool specification

Tool Information:

  • Name: GEO_search_expression_data

  • Type: GEORESTTool

  • Description: Search gene expression data from the GEO database. GEO is a public repository that archives and freely distributes microarray, next-generation sequencing, and other forms of high-throughput functional genomics data.

Parameters:

  • query (string) (required) Search query (e.g., ‘cancer’, ‘diabetes’, ‘microarray’)

  • organism (string) (optional) Organism name (e.g., ‘Homo sapiens’, ‘Mus musculus’)

  • study_type (string) (optional) Type of study (e.g., ‘expression’, ‘methylation’, ‘genome’)

  • platform (string) (optional) Platform used (e.g., ‘GPL96’, ‘GPL570’)

  • date_range (string) (optional) Date range in format ‘YYYY:YYYY’ (e.g., ‘2020:2023’)

  • limit (integer) (optional) Maximum number of results to return (default: 50)

  • sort (string) (optional) Sort order (‘relevance’, ‘date’, ‘title’)

Example Usage:

query = {
    "name": "GEO_search_expression_data",
    "arguments": {
        "query": "example_value"
    }
}
result = tu.run(query)