Rnacentral Tools

Configuration File: rnacentral_tools.json Tool Type: Local Tools Count: 2

This page contains all tools defined in the rnacentral_tools.json configuration file.

Available Tools

RNAcentral_get_by_accession (Type: RNAcentralGetTool)

Retrieve a single RNAcentral entry by accession for detailed annotations and source cross-referen…

RNAcentral_get_by_accession tool specification

Tool Information:

  • Name: RNAcentral_get_by_accession

  • Type: RNAcentralGetTool

  • Description: Retrieve a single RNAcentral entry by accession for detailed annotations and source cross-references. Use for cross-database ID mapping and metadata.

Parameters:

  • accession (string) (required) RNAcentral accession (e.g., ‘URS000075C808’).

Example Usage:

query = {
    "name": "RNAcentral_get_by_accession",
    "arguments": {
        "accession": "example_value"
    }
}
result = tu.run(query)

RNAcentral_search (Type: RNAcentralSearchTool)

Search aggregated ncRNA records (miRNA, rRNA, lncRNA, etc.) across sources via RNAcentral. Use to…

RNAcentral_search tool specification

Tool Information:

  • Name: RNAcentral_search

  • Type: RNAcentralSearchTool

  • Description: Search aggregated ncRNA records (miRNA, rRNA, lncRNA, etc.) across sources via RNAcentral. Use to find accessions, types, species, and descriptions for ncRNA analysis.

Parameters:

  • query (string) (required) Keyword, accession, or sequence-based query (per RNAcentral API).

  • page_size (integer) (optional) Number of records per page (1–100).

Example Usage:

query = {
    "name": "RNAcentral_search",
    "arguments": {
        "query": "example_value"
    }
}
result = tu.run(query)