Iedb ToolsĀ¶

Configuration File: iedb_tools.json Tool Type: Local Tools Count: 1

This page contains all tools defined in the iedb_tools.json configuration file.

Available ToolsĀ¶

iedb_search_epitopes (Type: IEDBTool)Ā¶

Searches for immune epitopes in the Immune Epitope Database (IEDB). Use this tool to find specifiā€¦

iedb_search_epitopes tool specification

Tool Information:

  • Name: iedb_search_epitopes

  • Type: IEDBTool

  • Description: Searches for immune epitopes in the Immune Epitope Database (IEDB). Use this tool to find specific epitope structures, such as linear peptides, involved in immune responses.

Parameters:

  • action (string) (required) The specific action to perform. Must be set to ā€˜search_epitopesā€™.

  • query (string) (optional) Sequence fragment or pattern to search for within the epitopeā€™s linear sequence. For example, use ā€˜KVFā€™ to find epitopes containing that sequence.

  • structure_type (string) (optional) The chemical type of the epitope structure. Common values include ā€˜Linear peptideā€™, ā€˜Discontinuous peptideā€™, or ā€˜Non-peptidicā€™.

  • limit (integer) (optional) The maximum number of epitope results to return. The default is 10.

Example Usage:

query = {
    "name": "iedb_search_epitopes",
    "arguments": {
        "action": "example_value"
    }
}
result = tu.run(query)