Imgt Tools

Configuration File: imgt_tools.json Tool Type: Local Tools Count: 3

This page contains all tools defined in the imgt_tools.json configuration file.

Available Tools

IMGT_get_gene_info (Type: IMGTTool)

Get information about IMGT databases, gene nomenclature, and analysis tools. Returns descriptions…

IMGT_get_gene_info tool specification

Tool Information:

  • Name: IMGT_get_gene_info

  • Type: IMGTTool

  • Description: Get information about IMGT databases, gene nomenclature, and analysis tools. Returns descriptions of IMGT resources (LIGM-DB, GENE-DB, V-QUEST) and gene naming conventions. Good starting point for immunogenetics research.

Parameters:

  • operation (string) (required) No description

Example Usage:

query = {
    "name": "IMGT_get_gene_info",
    "arguments": {
        "operation": "example_value"
    }
}
result = tu.run(query)

IMGT_get_sequence (Type: IMGTTool)

Get immunoglobulin/T cell receptor sequence from IMGT by accession number. IMGT is the reference …

IMGT_get_sequence tool specification

Tool Information:

  • Name: IMGT_get_sequence

  • Type: IMGTTool

  • Description: Get immunoglobulin/T cell receptor sequence from IMGT by accession number. IMGT is the reference for IG/TR/MHC gene sequences. Returns sequence in FASTA or EMBL format. Uses EBI DBFetch. No authentication required.

Parameters:

  • operation (string) (required) No description

  • accession (string) (required) IMGT/LIGM-DB accession or EMBL/GenBank accession

  • format (string) (optional) Output format: fasta or embl (default: fasta)

Example Usage:

query = {
    "name": "IMGT_get_sequence",
    "arguments": {
        "operation": "example_value",
        "accession": "example_value"
    }
}
result = tu.run(query)

IMGT_search_genes (Type: IMGTTool)

Search IMGT for immunoglobulin/TCR germline genes. Filter by gene type (IGHV, IGKV, TRAV, etc.) a…

IMGT_search_genes tool specification

Tool Information:

  • Name: IMGT_search_genes

  • Type: IMGTTool

  • Description: Search IMGT for immunoglobulin/TCR germline genes. Filter by gene type (IGHV, IGKV, TRAV, etc.) and species. Returns search URLs and gene type information for navigating IMGT GENE-DB.

Parameters:

  • operation (string) (required) No description

  • query (string) (optional) Search query (gene name)

  • gene_type (string) (optional) Gene type: IGHV, IGHD, IGHJ, IGKV, IGLV, TRAV, TRBV, etc.

  • species (string) (optional) Species name (default: Homo sapiens)

Example Usage:

query = {
    "name": "IMGT_search_genes",
    "arguments": {
        "operation": "example_value"
    }
}
result = tu.run(query)