Cbioportal Tools

Configuration File: cbioportal_tools.json Tool Type: Local Tools Count: 2

This page contains all tools defined in the cbioportal_tools.json configuration file.

Available Tools

cBioPortal_get_cancer_studies (Type: CBioPortalRESTTool)

Get list of cancer studies from cBioPortal

cBioPortal_get_cancer_studies tool specification

Tool Information:

  • Name: cBioPortal_get_cancer_studies

  • Type: CBioPortalRESTTool

  • Description: Get list of cancer studies from cBioPortal

Parameters:

  • limit (integer) (optional) Number of studies to return

Example Usage:

query = {
    "name": "cBioPortal_get_cancer_studies",
    "arguments": {
    }
}
result = tu.run(query)

cBioPortal_get_mutations (Type: CBioPortalRESTTool)

Get mutation data for specific genes in a cancer study

cBioPortal_get_mutations tool specification

Tool Information:

  • Name: cBioPortal_get_mutations

  • Type: CBioPortalRESTTool

  • Description: Get mutation data for specific genes in a cancer study

Parameters:

  • study_id (string) (required) Cancer study ID

  • gene_list (string) (required) Comma-separated gene symbols

Example Usage:

query = {
    "name": "cBioPortal_get_mutations",
    "arguments": {
        "study_id": "example_value",
        "gene_list": "example_value"
    }
}
result = tu.run(query)