Biomodels Tools

Configuration File: biomodels_tools.json Tool Type: Local Tools Count: 2

This page contains all tools defined in the biomodels_tools.json configuration file.

Available Tools

biomodels_get_files (Type: BioModelsTool)

Retrieves the download link for a specific biological model from the BioModels database using its…

biomodels_get_files tool specification

Tool Information:

  • Name: biomodels_get_files

  • Type: BioModelsTool

  • Description: Retrieves the download link for a specific biological model from the BioModels database using its Model ID.

Parameters:

  • action (string) (required) The specific action to perform. Must be set to ‘get_model_files’.

  • model_id (string) (required) The unique Model ID (e.g., ‘BIOMD0000000469’) for which to retrieve the download link.

Example Usage:

query = {
    "name": "biomodels_get_files",
    "arguments": {
        "action": "example_value",
        "model_id": "example_value"
    }
}
result = tu.run(query)

biomodels_search (Type: BioModelsTool)

Searches for computational biological models in the EBI BioModels database. Use this tool to find…

biomodels_search tool specification

Tool Information:

  • Name: biomodels_search

  • Type: BioModelsTool

  • Description: Searches for computational biological models in the EBI BioModels database. Use this tool to find models related to specific biological processes, such as ‘glycolysis’ or ‘apoptosis’.

Parameters:

  • action (string) (required) The specific action to perform. Must be set to ‘search_models’.

  • query (string) (required) The search term to query the BioModels database. Example queries include pathway names (‘glycolysis’), disease names, or other biological keywords.

  • limit (integer) (optional) The maximum number of model results to return. The default is 10.

Example Usage:

query = {
    "name": "biomodels_search",
    "arguments": {
        "action": "example_value",
        "query": "example_value"
    }
}
result = tu.run(query)