tooluniverse.efo_tool module¶

class tooluniverse.efo_tool.EFOTool(tool_config, base_url='https://www.ebi.ac.uk/ols4/api/search')[source]¶

Bases: BaseTool

Tool to lookup Experimental Factor Ontology (EFO) IDs for diseases via the EMBL-EBI OLS API.

__init__(tool_config, base_url='https://www.ebi.ac.uk/ols4/api/search')[source]¶

_search(disease, rows)[source]¶

run(arguments)[source]¶

Execute the tool.

The default BaseTool implementation accepts an optional arguments mapping to align with most concrete tool implementations which expect a dictionary of inputs.