tooluniverse.graphql_tool module

class tooluniverse.graphql_tool.DiseaseTargetScoreTool(tool_config, datasource_id=None)

Bases: GraphQLTool

Tool to extract disease-target association scores from specific data sources

__init__(tool_config, datasource_id=None)

run(arguments)

Extract disease-target scores for a specific datasource Arguments should contain: efoId, datasourceId (optional), pageSize (optional)

class tooluniverse.graphql_tool.GraphQLTool(tool_config, endpoint_url)

Bases: BaseTool

__init__(tool_config, endpoint_url)

run(arguments)

Execute the tool.

The default BaseTool implementation accepts an optional arguments mapping to align with most concrete tool implementations which expect a dictionary of inputs.

class tooluniverse.graphql_tool.OpentargetGeneticsTool(tool_config)

Bases: GraphQLTool

__init__(tool_config)

class tooluniverse.graphql_tool.OpentargetTool(tool_config)

Bases: GraphQLTool

__init__(tool_config)

run(arguments)

Execute the tool.

The default BaseTool implementation accepts an optional arguments mapping to align with most concrete tool implementations which expect a dictionary of inputs.

class tooluniverse.graphql_tool.OpentargetToolDrugNameMatch(tool_config, drug_generic_tool=None)

Bases: GraphQLTool

__init__(tool_config, drug_generic_tool=None)

run(arguments)

Execute the tool.

The default BaseTool implementation accepts an optional arguments mapping to align with most concrete tool implementations which expect a dictionary of inputs.

tooluniverse.graphql_tool.execute_query(endpoint_url, query, variables=None)

tooluniverse.graphql_tool.remove_none_and_empty_values(json_obj)

Remove all key-value pairs where the value is None or an empty list

tooluniverse.graphql_tool.validate_query(query_str, schema_str)