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🚀 Getting Started

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🤖 Building AI Scientists

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💡 Use ToolUniverse

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    • SummarizationHook
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🔨 Add Tools to ToolUniverse

  • Navigation
  • Create Your First Tool
  • Local Tools
    • Local Tools Tutorial
    • Step 1: Your First Tool (Simplest Example)
    • Step 2: Adding Parameters
    • Step 3: Adding Input Validation
    • Step 4: Complete Real Example
    • Common Scenarios
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    • Next Steps
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🔧 Tools

  • Available Tools
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    • Blast Tools
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    • Cbioportal Tools
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    • Chembl Tools
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    • Clinvar Tools
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    • Dailymed Tools
    • Dataset Tools
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    • Disease Target Score Tools
    • Doaj Tools
    • Drug Discovery Agents
    • Efo Tools
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    • Ensembl Tools
    • Europe Pmc Tools
    • Expert Feedback Tools
    • Fatcat Tools
    • Fda Drug Adverse Event Tools
    • Fda Drug Labeling Tools
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    • Mcp Client Tools Example
    • Medlineplus Tools
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    • Protein Structure 3D Tools
    • Pubchem Tools
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    • Python Executor Tools
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    • Txagent Client Tools
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    • Uniprot Tools
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    • Uspto Tools
    • Web Search Tools
    • Wikidata Sparql Tools
    • Wikipathways Tools
    • Worms Tools
    • Xml Tools
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    • Depmap Tools
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    • Immune Compass Tools
    • Pinnacle Tools
    • Transcriptformer Tools
    • Uspto Downloader Tools
  • Remote Tools Setup
    • Boltz2 Tool Setup
    • DepMap Gene Correlation Analysis Tool - MCP Server
    • Human Expert Feedback System
    • COMPASS Immunotherapy Treatment Prediction Tool - MCP Server
    • PINNACLE Protein-Protein Interaction Tool
    • Transcriptformer Gene Embedding Tool
    • USPTO Downloader Tool Setup

🔌 API

  • API Reference
    • tooluniverse package
      • tooluniverse.compose_scripts package
        • tooluniverse.compose_scripts.biomarker_discovery module
        • tooluniverse.compose_scripts.comprehensive_drug_discovery module
        • tooluniverse.compose_scripts.drug_safety_analyzer module
        • tooluniverse.compose_scripts.literature_tool module
        • tooluniverse.compose_scripts.output_summarizer module
        • tooluniverse.compose_scripts.tool_description_optimizer module
        • tooluniverse.compose_scripts.tool_discover module
        • tooluniverse.compose_scripts.tool_graph_composer module
        • tooluniverse.compose_scripts.tool_graph_generation module
        • tooluniverse.compose_scripts.tool_metadata_generator module
      • tooluniverse.admetai_tool module
      • tooluniverse.agentic_tool module
      • tooluniverse.alphafold_tool module
      • tooluniverse.arxiv_tool module
      • tooluniverse.base_tool module
      • tooluniverse.biorxiv_tool module
      • tooluniverse.boltz_tool module
      • tooluniverse.chem_tool module
      • tooluniverse.compose_tool module
      • tooluniverse.core_tool module
      • tooluniverse.crossref_tool module
      • tooluniverse.ctg_tool module
      • tooluniverse.custom_tool module
      • tooluniverse.dailymed_tool module
      • tooluniverse.dataset_tool module
      • tooluniverse.dblp_tool module
      • tooluniverse.default_config module
      • tooluniverse.doaj_tool module
      • tooluniverse.efo_tool module
      • tooluniverse.embedding_database module
      • tooluniverse.embedding_sync module
      • tooluniverse.enrichr_tool module
      • tooluniverse.europe_pmc_tool module
      • tooluniverse.execute_function module
      • tooluniverse.extended_hooks module
      • tooluniverse.fatcat_tool module
      • tooluniverse.gene_ontology_tool module
      • tooluniverse.graphql_tool module
      • tooluniverse.gwas_tool module
      • tooluniverse.hal_tool module
      • tooluniverse.hpa_tool module
      • tooluniverse.humanbase_tool module
      • tooluniverse.llm_clients module
      • tooluniverse.logging_config module
      • tooluniverse.mcp_client_tool module
      • tooluniverse.mcp_integration module
      • tooluniverse.mcp_tool_registry module
      • tooluniverse.medlineplus_tool module
      • tooluniverse.medrxiv_tool module
      • tooluniverse.memory_manager module
      • tooluniverse.odphp_tool module
      • tooluniverse.openaire_tool module
      • tooluniverse.openalex_tool module
      • tooluniverse.openfda_adv_tool module
      • tooluniverse.openfda_tool module
      • tooluniverse.osf_preprints_tool module
      • tooluniverse.output_hook module
      • tooluniverse.package_tool module
      • tooluniverse.pmc_tool module
      • tooluniverse.pubchem_tool module
      • tooluniverse.pubmed_tool module
      • tooluniverse.pubtator_tool module
      • tooluniverse.rcsb_pdb_tool module
      • tooluniverse.reactome_tool module
      • tooluniverse.remote_tool module
      • tooluniverse.restful_tool module
      • tooluniverse.semantic_scholar_tool module
      • tooluniverse.smcp module
      • tooluniverse.smcp_server module
      • tooluniverse.tool_finder_embedding module
      • tooluniverse.tool_finder_keyword module
      • tooluniverse.tool_finder_llm module
      • tooluniverse.tool_graph_web_ui module
      • tooluniverse.tool_registry module
      • tooluniverse.unified_guideline_tools module
      • tooluniverse.uniprot_tool module
      • tooluniverse.unpaywall_tool module
      • tooluniverse.url_tool module
      • tooluniverse.uspto_tool module
      • tooluniverse.utils module
      • tooluniverse.wikidata_sparql_tool module
      • tooluniverse.xml_tool module
      • tooluniverse.zenodo_tool module
    • tooluniverse.execute_function module
    • tooluniverse.cache package
      • tooluniverse.cache.memory_cache module
      • tooluniverse.cache.result_cache_manager module
      • tooluniverse.cache.sqlite_backend module
    • tooluniverse.space package
    • tooluniverse.base_tool module
    • tooluniverse.core_tool module
    • tooluniverse.exceptions module
    • tooluniverse.tool_registry module
    • tooluniverse.logging_config module
    • tooluniverse.utils module
    • tooluniverse.default_config module
    • tooluniverse.agentic_tool module
    • tooluniverse.remote_tool module
    • tooluniverse.compose_tool module
    • tooluniverse.tool_finder_embedding module
    • tooluniverse.tool_finder_keyword module
    • tooluniverse.tool_finder_llm module
    • tooluniverse.smcp module
    • tooluniverse.smcp_server module
    • tooluniverse.mcp_client_tool module
    • tooluniverse.mcp_integration module
    • tooluniverse.mcp_tool_registry module
    • tooluniverse.embedding_database module
    • tooluniverse.embedding_sync module
    • tooluniverse.output_hook module

❓ Reference

  • Data Sources
  1. ToolUniverse /
  2. Local Tools

Local Tools¶

Python classes that run within ToolUniverse for high-performance custom functionality.

Local Tools

  • Local Tools Tutorial
  • Step 1: Your First Tool (Simplest Example)
  • Step 2: Adding Parameters
  • Step 3: Adding Input Validation
  • Step 4: Complete Real Example
  • Common Scenarios
  • Troubleshooting
  • Next Steps
Previous
Create Your First Tool
Next
Local Tools Tutorial

2025, Shanghua Gao

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