Tool Caller Tutorial¶

The Tool Caller is ToolUniverse’s execution engine that handles tool instantiation, validation, and execution. It uses dynamic loading to efficiently manage hundreds of tools without loading them all at startup.

Python API Usage¶

ToolUniverse provides three ways to call tools through its Python API:

Direct Import (Simplest)
Dynamic Access (Convenient)
JSON Format (Most Flexible)

Direct Import¶

Import and call tools directly:

from tooluniverse.tools import UniProt_get_entry_by_accession

result = UniProt_get_entry_by_accession(accession="P05067")
print(result)

Dynamic Access¶

Access tools through the ToolUniverse instance:

from tooluniverse import ToolUniverse

tu = ToolUniverse()
result = tu.tools.UniProt_get_entry_by_accession(accession="P05067")
print(result)

JSON Format (Recommended)¶

Use the run() method for maximum flexibility:

from tooluniverse import ToolUniverse

tu = ToolUniverse()

# Single tool call
result = tu.run({
    "name": "UniProt_get_entry_by_accession",
    "arguments": {"accession": "P05067"}
})

# Multiple tool calls
results = tu.run([
    {
        "name": "UniProt_get_entry_by_accession",
        "arguments": {"accession": "P05067"}
    },
    {
        "name": "OpenTargets_get_associated_targets_by_disease_efoId",
        "arguments": {"efoId": "EFO_0000249"}
    }
])

print(results)

The run() method is recommended because it: - Supports both single and multiple tool calls - Provides better error handling - Works with AI agent integration formats - Handles dynamic tool loading automatically

Error Handling¶

The Tool Caller provides comprehensive error handling and validation:

from tooluniverse import ToolUniverse

tu = ToolUniverse()

# Example: Invalid tool name
try:
    result = tu.run({
        "name": "nonexistent_tool",
        "arguments": {"param": "value"}
    })
except Exception as e:
    print(f"Tool execution failed: {e}")

# Example: Missing required parameter
result = tu.run({
    "name": "UniProt_get_entry_by_accession",
    "arguments": {"wrong_param": "value"}  # Missing required 'accession'
})
# Returns: "Invalid function call: Missing required parameter: accession"

Tool Execution Flow¶

The Tool Caller follows this systematic process:

Parse Request: Extract tool name and arguments
Validate Tool: Check if tool exists and is available
Validate Arguments: Ensure arguments match tool’s parameter schema
Load Tool: Dynamically load tool if not cached
Execute: Call the tool’s run() method
Return Result: Format and return the output

Performance Features¶

Dynamic Loading: Tools are loaded only when first requested and cached for subsequent calls, minimizing memory usage.

Thread Safety: Multiple tools can execute concurrently without conflicts.

Caching: Loaded tools are cached to improve performance for repeated calls.

MCP Server Integration¶

ToolUniverse provides MCP (Model Context Protocol) server capabilities for AI agent integration. This allows AI agents to discover and execute tools through a standardized protocol.

SMCP Server Overview¶

The SMCP (Scientific Model Context Protocol) server extends standard MCP with scientific domain expertise and intelligent tool discovery.

Key Features: - Scientific Tool Integration: Access to 1000+ specialized tools - AI-Powered Tool Discovery: Multi-tiered intelligent search system - Full MCP Protocol Support: Complete implementation of MCP specification - High-Performance Architecture: Production-ready features

Server Setup¶

Python Configuration¶

from tooluniverse.smcp import SMCP

# Create a basic MCP server
server = SMCP(
    name="Scientific Research Server",
    tool_categories=["uniprot", "opentarget", "ChEMBL"],
    search_enabled=True,
    max_workers=10
)

# Start the server
server.run_simple(
    transport="http",
    host="localhost",
    port=8000
)

Command Line Setup¶

# Start MCP server with specific configuration
tooluniverse-smcp \
    --port 8000 \
    --host 0.0.0.0 \
    --categories "uniprot" "opentarget" "ChEMBL" \
    --max-workers 10 \
    --verbose

# List all available tools
tooluniverse-smcp --list-tools

# List available categories
tooluniverse-smcp --list-categories

MCP Client Integration¶

Python MCP Client Examples¶

STDIO Client:

from mcp.client.stdio import stdio_client
from mcp.client.session import ClientSession
from mcp import StdioServerParameters
import asyncio

async def connect_to_tooluniverse():
    # Create stdio server parameters
    server_params = StdioServerParameters(
        command="tooluniverse-smcp-stdio",
        args=[]
    )

    # Create stdio client transport
    async with stdio_client(server_params) as (read, write):
        # Create client session
        async with ClientSession(read, write) as session:
            # Initialize the session
            await session.initialize()

            # List available tools
            tools_result = await session.list_tools()
            print(f"Available tools: {len(tools_result.tools)}")

            # Call a tool
            result = await session.call_tool(
                "UniProt_get_entry_by_accession",
                {"accession": "P05067"}
            )

            return result

# Run the client
result = asyncio.run(connect_to_tooluniverse())

HTTP Client:

from mcp.client.session import ClientSession
from mcp.client.streamable_http import streamablehttp_client
import asyncio

async def connect_via_http():
    # Connect to HTTP MCP server
    async with streamablehttp_client("http://localhost:8000/mcp") as (read, write, get_session_id):
        async with ClientSession(read, write) as session:
            await session.initialize()

            # List available tools
            tools_result = await session.list_tools()
            print(f"Available tools: {len(tools_result.tools)}")

            # Call a tool
            result = await session.call_tool(
                "UniProt_get_entry_by_accession",
                {"accession": "P05067"}
            )

            return result

# Run the client
result = asyncio.run(connect_via_http())

cURL Client Examples¶

You can also interact with ToolUniverse MCP servers directly using cURL commands:

# List available tools
curl -X POST http://localhost:8000/mcp \
  -H "Content-Type: application/json" \
  -H "Accept: application/json, text/event-stream" \
  -d '{
    "jsonrpc": "2.0",
    "id": 1,
    "method": "tools/list",
    "params": {}
  }'

# Call a tool
curl -X POST http://localhost:8000/mcp \
  -H "Content-Type: application/json" \
  -H "Accept: application/json, text/event-stream" \
  -d '{
    "jsonrpc": "2.0",
    "id": 2,
    "method": "tools/call",
    "params": {
      "name": "UniProt_get_entry_by_accession",
      "arguments": {
        "accession": "P05067"
      }
    }
  }'

Important Notes for MCP Clients¶

Required Headers: ToolUniverse MCP servers use the streamable-http protocol, which requires: - Content-Type: application/json - Accept: application/json, text/event-stream
JSON-RPC 2.0 Format: All requests must follow the JSON-RPC 2.0 specification with: - jsonrpc: “2.0” - id: Unique request identifier - method: The MCP method to call - params: Method parameters
Tool Arguments: When calling tools, arguments must match the tool’s parameter schema exactly.