tooluniverse.reactome_tool module

class tooluniverse.reactome_tool.ReactomeRESTTool

Bases: BaseTool

Generic Reactome Content Service REST tool. If there is no “fields.extract_path” in config or its value is empty, returns complete JSON; Otherwise, drills down according to the “dot-separated path” in extract_path and returns corresponding sub-node.

__init__(tool_config)

run(arguments)

Execute the tool.

The default BaseTool implementation accepts an optional arguments mapping to align with most concrete tool implementations which expect a dictionary of inputs.

Parameters:

• arguments (dict, optional) – Tool-specific arguments

• stream_callback (callable, optional) – Callback for streaming responses

• use_cache (bool, optional) – Whether result caching is enabled

• validate (bool, optional) – Whether parameter validation was performed

Note

These additional parameters (stream_callback, use_cache, validate) are passed from run_one_function() to provide context about the execution. Tools can use these for optimization or special handling.

For backward compatibility, tools that don’t accept these parameters will still work - they will only receive the arguments parameter.