Available Tools#

ToolUniverse provides over 600 scientific tools organized into local and remote categories. This overview helps you discover and navigate the available tools for your research needs.

Tool Registry#

Local Tools#

Local tools are Python classes that run within the ToolUniverse process, providing high performance and seamless integration.

Key Features: - High performance with no network overhead - Automatic discovery and registration - Full access to ToolUniverse features - Easy development and testing

Remote Tools#

Remote tools integrate external services, APIs, and specialized systems running on different servers.

Key Features: - Integration with external APIs and services - Scalable computation offloading - Support for different programming languages - Secure isolation of sensitive operations

Tip

Discover Available Tools:

Tool Listing Tutorial - Browse tools by category and explore the full catalog
Tool Finder Tutorial - Learn advanced search techniques and filters
Remote Tools Setup - Set up remote tool integrations
Tool Loading Tutorial - Load and configure local tools

Overview#

Total Configuration Files: 653
Total Tools: 2835

Local Tools#

Note

Tools running within the ToolUniverse process

Remote Tools#

Note

Tools registered in with remote registry

Tools by Type#

ADAStandardsTool (3 tools)#

Local Tools:

ADA_get_standards_section (from Ada Aha Nccn Tools)
ADA_list_standards_sections (from Ada Aha Nccn Tools)
ADA_search_standards (from Ada Aha Nccn Tools)

ADMETAITool (9 tools)#

Local Tools:

ADMETAI_predict_BBB_penetrance (from Admetai Tools)
ADMETAI_predict_CYP_interactions (from Admetai Tools)
ADMETAI_predict_bioavailability (from Admetai Tools)
ADMETAI_predict_clearance_distribution (from Admetai Tools)
ADMETAI_predict_nuclear_receptor_activity (from Admetai Tools)
ADMETAI_predict_physicochemical_properties (from Admetai Tools)
ADMETAI_predict_solubility_lipophilicity_hydration (from Admetai Tools)
ADMETAI_predict_stress_response (from Admetai Tools)
ADMETAI_predict_toxicity (from Admetai Tools)

AHAACCGuidelineTool (4 tools)#

Local Tools:

ACC_list_guidelines (from Ada Aha Nccn Tools)
AHA_ACC_get_guideline (from Ada Aha Nccn Tools)
AHA_ACC_search_guidelines (from Ada Aha Nccn Tools)
AHA_list_guidelines (from Ada Aha Nccn Tools)

AMPSphereGetAmpDistributionsTool (1 tools)#

Local Tools:

AMPSphere_get_amp_distributions (from Ampsphere Tools)

AMPSphereGetAmpFeaturesTool (1 tools)#

Local Tools:

AMPSphere_get_amp_features (from Ampsphere Tools)

AMPSphereGetAmpTool (1 tools)#

Local Tools:

AMPSphere_get_amp (from Ampsphere Record Tools)

AMPSphereGetFamilyTool (1 tools)#

Local Tools:

AMPSphere_get_family (from Ampsphere Tools)

AMPSphereSearchAmpsTool (1 tools)#

Local Tools:

AMPSphere_search_amps (from Ampsphere Tools)

AMPSphereSequenceMatchTool (1 tools)#

Local Tools:

AMPSphere_sequence_match (from Ampsphere Record Tools)

AOPWikiDetailTool (2 tools)#

Local Tools:

AOPWiki_get_aop (from Aopwiki Tools)
AOPWiki_get_key_event (from Aopwiki Tools)

AOPWikiListTool (1 tools)#

Local Tools:

AOPWiki_list_aops (from Aopwiki Tools)

APPRISTool (3 tools)#

Local Tools:

APPRIS_get_functional_annotations (from Appris Tools)
APPRIS_get_isoforms (from Appris Tools)
APPRIS_get_principal_isoform (from Appris Tools)

ARCHS4Tool (2 tools)#

Local Tools:

ARCHS4_get_gene_correlations (from Archs4 Tools)
ARCHS4_get_gene_expression (from Archs4 Tools)

AddgeneTool (3 tools)#

Local Tools:

Addgene_get_plasmid (from Addgene Tools)
Addgene_search_depositors (from Addgene Tools)
Addgene_search_plasmids (from Addgene Tools)

AgenticTool (50 tools)#

Local Tools:

ADMETAnalyzerAgent (from Drug Discovery Agents)
AdvancedCodeQualityAnalyzer (from Agentic Tools)
AdverseEventICDMapper (from Adverse Event Tools)
AdverseEventPredictionQuestionGenerator (from Adverse Event Tools)
AdverseEventPredictionQuestionGeneratorWithContext (from Adverse Event Tools)
ArgumentDescriptionOptimizer (from Optimizer Tools)
ClinicalTrialDesignAgent (from Drug Discovery Agents)
CodeQualityAnalyzer (from Tool Discovery Agents)
CompoundDiscoveryAgent (from Drug Discovery Agents)
DataAnalysisValidityReviewer (from Agentic Tools)
DescriptionAnalyzer (from Optimizer Tools)
DescriptionQualityEvaluator (from Optimizer Tools)
DiseaseAnalyzerAgent (from Drug Discovery Agents)
DomainExpertValidator (from Agentic Tools)
DrugInteractionAnalyzerAgent (from Drug Discovery Agents)
DrugOptimizationAgent (from Drug Discovery Agents)
EthicalComplianceReviewer (from Agentic Tools)
ExperimentalDesignScorer (from Agentic Tools)
HypothesisGenerator (from Agentic Tools)
IntentAnalyzerAgent (from Literature Search Tools)
KeywordExtractorAgent (from Literature Search Tools)
LabelGenerator (from Agentic Tools)
LiteratureContextReviewer (from Agentic Tools)
LiteratureSynthesisAgent (from Drug Discovery Agents)
MedicalLiteratureReviewer (from Agentic Tools)
MedicalTermNormalizer (from Agentic Tools)
MethodologyRigorReviewer (from Agentic Tools)
NoveltySignificanceReviewer (from Agentic Tools)
OverallSummaryAgent (from Literature Search Tools)
PackageAnalyzer (from Tool Discovery Agents)
ProtocolOptimizer (from Agentic Tools)
QualityCheckerAgent (from Literature Search Tools)
QuestionRephraser (from Agentic Tools)
ReferenceInfoAnalyzer (from Tool Discovery Agents)
ReproducibilityTransparencyReviewer (from Agentic Tools)
ResultSummarizerAgent (from Literature Search Tools)
ResultsInterpretationReviewer (from Agentic Tools)
ScientificTextSummarizer (from Agentic Tools)
TestCaseGenerator (from Optimizer Tools)
TestResultsAnalyzer (from Tool Discovery Agents)
ToolCompatibilityAnalyzer (from Tool Composition Tools)
ToolMetadataGenerator (from Agentic Tools)
ToolMetadataStandardizer (from Agentic Tools)
ToolOutputSummarizer (from Output Summarization Tools)
ToolQualityEvaluator (from Agentic Tools)
ToolRelationshipDetector (from Agentic Tools)
UnifiedToolGenerator (from Tool Discovery Agents)
WritingPresentationReviewer (from Agentic Tools)
XMLToolOptimizer (from Tool Discovery Agents)
call_agentic_human (from Agentic Tools)

AgingCohortSearchTool (1 tools)#

Local Tools:

AgingCohort_search (from Aging Cohort Tools)

AllenBrainTool (5 tools)#

Local Tools:

AllenBrain_get_expression_datasets (from Allen Brain Tools)
AllenBrain_get_structure (from Allen Brain Tools)
AllenBrain_get_structure_expression_values (from Allen Brain Tools)
AllenBrain_search_genes (from Allen Brain Tools)
AllenBrain_search_structures (from Allen Brain Tools)

AllenCellTypesSpecimensTool (1 tools)#

Local Tools:

AllenCellTypes_search_specimens (from Allen Cell Types Tools)

AllianceGenomeTool (24 tools)#

Local Tools:

Alliance_get_alleles_and_models (from Alliance Genome Tools)
Alliance_get_disease (from Alliance Genome Tools)
Alliance_get_disease_genes (from Alliance Genome Tools)
Alliance_get_gene (from Alliance Genome Tools)
Alliance_get_gene_orthologs (from Alliance Genome Tools)
Alliance_get_gene_phenotypes (from Alliance Genome Tools)
Alliance_get_molecular_interactions (from Alliance Genome Tools)
Alliance_search_genes (from Alliance Genome Tools)
FlyBase_get_gene (from Flybase Tools)
FlyBase_get_gene_alleles (from Flybase Tools)
FlyBase_get_gene_disease_models (from Flybase Tools)
FlyBase_get_gene_expression (from Flybase Tools)
FlyBase_get_gene_interactions (from Flybase Tools)
FlyBase_get_gene_orthologs (from Flybase Tools)
MGI_get_gene (from Mgi Tools)
MGI_get_phenotypes (from Mgi Tools)
MGI_search_genes (from Mgi Tools)
ZFIN_get_allele (from Zfin Tools)
ZFIN_get_gene (from Zfin Tools)
ZFIN_get_gene_alleles (from Zfin Tools)
ZFIN_get_gene_expression (from Zfin Tools)
ZFIN_get_gene_orthologs (from Zfin Tools)
ZFIN_get_gene_phenotypes (from Zfin Tools)
ZFIN_search (from Zfin Tools)

AlphaFillTransplantsTool (1 tools)#

Local Tools:

AlphaFill_get_transplants (from Alphafill Tools)

AlphaFoldRESTTool (3 tools)#

Local Tools:

alphafold_get_annotations (from Alphafold Tools)
alphafold_get_prediction (from Alphafold Tools)
alphafold_get_summary (from Alphafold Tools)

AlphaGenomeTool (2 tools)#

Local Tools:

AlphaGenome_predict_interval (from Alphagenome Tools)
AlphaGenome_score_variant (from Alphagenome Tools)

AlphaMissenseTool (3 tools)#

Local Tools:

AlphaMissense_get_protein_scores (from Alphamissense Tools)
AlphaMissense_get_residue_scores (from Alphamissense Tools)
AlphaMissense_get_variant_score (from Alphamissense Tools)

AntibodyRegistryTool (2 tools)#

Local Tools:

AntibodyRegistry_get_by_rrid (from Antibody Registry Tools)
AntibodyRegistry_search (from Antibody Registry Tools)

ArXivPDFSnippetsTool (1 tools)#

Local Tools:

ArXiv_get_pdf_snippets (from Arxiv Tools)

ArXivTool (1 tools)#

Local Tools:

ArXiv_search_papers (from Arxiv Tools)

ArrayExpressRESTTool (4 tools)#

Local Tools:

arrayexpress_get_experiment (from Arrayexpress Tools)
arrayexpress_get_experiment_files (from Arrayexpress Tools)
arrayexpress_get_experiment_samples (from Arrayexpress Tools)
arrayexpress_search_experiments (from Arrayexpress Tools)

BGPTPaperEvidenceTool (1 tools)#

Local Tools:

BGPT_search_paper_evidence (from Bgpt Tools)

BRENDATool (5 tools)#

Local Tools:

BRENDA_get_enzyme_info (from Brenda Tools)
BRENDA_get_enzyme_kinetics (from Brenda Tools)
BRENDA_get_inhibitors (from Brenda Tools)
BRENDA_get_kcat (from Brenda Tools)
BRENDA_get_km (from Brenda Tools)

BVBRCTool (13 tools)#

Local Tools:

BVBRC_get_genome (from Bvbrc Tools)
BVBRC_get_protein_structure (from Bvbrc Tools)
BVBRC_get_taxonomy (from Bvbrc Tools)
BVBRC_search_amr (from Bvbrc Tools)
BVBRC_search_epitopes (from Bvbrc Tools)
BVBRC_search_genome_features (from Bvbrc Tools)
BVBRC_search_genomes (from Bvbrc Tools)
BVBRC_search_pathways (from Bvbrc Tools)
BVBRC_search_protein_structures (from Bvbrc Tools)
BVBRC_search_specialty_genes (from Bvbrc Tools)
BVBRC_search_subsystems (from Bvbrc Tools)
BVBRC_search_surveillance (from Bvbrc Tools)
BVBRC_search_taxonomy (from Bvbrc Tools)

BaseRESTTool (277 tools)#

Local Tools:

Anaconda_get_package (from Anaconda Tools)
Anaconda_search_packages (from Anaconda Tools)
ArtIC_get_artwork (from Artic Tools)
ArtIC_search_artworks (from Artic Tools)
BMRB_get_entries_by_pdb_id (from Bmrb Tools)
BMRB_get_entries_by_uniprot (from Bmrb Tools)
BMRB_get_entry (from Bmrb Tools)
BMRB_get_entry_citation (from Bmrb Tools)
BMRB_get_validation (from Bmrb Tools)
BMRB_search_by_keyword (from Bmrb Tools)
BMRB_search_by_sequence (from Bmrb Tools)
BMRB_search_chemical_shifts (from Bmrb Tools)
BioRxiv_list_recent_preprints (from Biorxiv Ext Tools)
BioTools_get_tool (from Biotools Registry Tools)
BioTools_search (from Biotools Registry Tools)
BioTools_search_by_operation (from Biotools Registry Tools)
BioTools_search_by_topic (from Biotools Registry Tools)
BioTools_search_by_type (from Biotools Registry Tools)
Bioconductor_get_package (from Bioconductor Tools)
Bioconductor_search_packages (from Bioconductor Tools)
CEDA_search_datasets (from Ceda Tools)
CPIC_get_alleles (from Cpic Tools)
CPIC_get_drug_info (from Cpic Tools)
CPIC_get_gene_info (from Cpic Tools)
CPIC_list_drugs (from Cpic Tools)
CPIC_list_pgx_genes (from Cpic Tools)
CRAN_get_package (from Cran Tools)
CRAN_get_package_versions (from Cran Tools)
ChannelsDB_get_channels_cofactor (from Channelsdb Tools)
ChannelsDB_get_channels_pdb (from Channelsdb Tools)
CoL_get_children (from Col Tools)
CoL_get_taxon (from Col Tools)
CoL_search_species (from Col Tools)
DBLP_search_authors (from Dblp Tools)
DBLP_search_venues (from Dblp Tools)
DailyMed_search_drug_classes (from Clinical Guidelines Tools)
DataONE_search_datasets (from Dataone Tools)
Dataverse_get_dataset (from Dataverse Tools)
Dataverse_search_datasets (from Dataverse Tools)
DiseaseSH_get_covid_historical (from Disease Sh Ext Tools)
DiseaseSH_get_vaccine_coverage (from Disease Sh Ext Tools)
DiseaseSh_get_country_stats (from Diseasesh Tools)
DiseaseSh_get_global_stats (from Diseasesh Tools)
DiseaseSh_get_historical (from Diseasesh Tools)
Dryad_get_dataset (from Dryad Tools)
Dryad_get_dataset_files (from Dryad Tools)
Dryad_search_datasets (from Dryad Tools)
ELIXIRTeSS_search_events (from Elixir Tess Tools)
ELIXIRTeSS_search_materials (from Elixir Tess Tools)
EPMC_get_citations (from Europepmc Citations Tools)
EPMC_get_references (from Europepmc Citations Tools)
ERDDAP_get_dataset_info (from Erddap Tools)
ERDDAP_search_datasets (from Erddap Tools)
EVA_get_clustered_variant_by_rs (from Eva Tools)
EVA_get_variants_by_gene (from Eva Tools)
EVA_get_variants_by_region (from Eva Tools)
EVA_list_studies (from Eva Tools)
EuropePMC_get_article_datalinks (from Europepmc Citations Tools)
Eurostat_get_dataset (from Eurostat Tools)
FPbase_get_protein (from Fpbase Tools)
FPbase_search_by_spectrum (from Fpbase Tools)
Figshare_get_article (from Figshare Tools)
Figshare_search_articles (from Figshare Tools)
FlyMine_search (from Flymine Tools)
FlyMine_search_genes (from Flymine Tools)
G2P_download_panel (from Gene2Phenotype Tools)
G2P_get_gene (from Gene2Phenotype Tools)
G2P_get_panel (from Gene2Phenotype Tools)
G2P_get_record (from Gene2Phenotype Tools)
G2P_search (from Gene2Phenotype Tools)
GBIF_get_species (from Gbif Ext Tools)
GBIF_match_name (from Gbif Ext Tools)
GBIF_occurrence_stats (from Gbif Ext Tools)
GBIF_suggest_species (from Gbif Ext Tools)
GeneNetwork_get_dataset_info (from Genenetwork Ext Tools)
GeneNetwork_get_sample_data (from Genenetwork Tools)
GeneNetwork_get_trait_info (from Genenetwork Ext Tools)
GeneNetwork_list_datasets (from Genenetwork Tools)
GeneNetwork_list_groups (from Genenetwork Tools)
GeneNetwork_list_species (from Genenetwork Tools)
GitHub_get_repository (from Github Tools)
GitHub_get_user_profile (from Github Tools)
GitHub_search_repositories (from Github Tools)
HuggingFace_get_model (from Huggingface Tools)
HuggingFace_search_datasets (from Huggingface Tools)
HuggingFace_search_models (from Huggingface Tools)
HumanMine_search (from Humanmine Tools)
HumanMine_search_genes (from Humanmine Tools)
HumanMine_search_pathways (from Humanmine Tools)
IDR_get_image_map_annotations (from Idr Tools)
IDR_get_study (from Idr Tools)
IDR_get_study_datasets (from Idr Tools)
IDR_list_dataset_images (from Idr Tools)
IDR_list_studies (from Idr Tools)
IdentifiersOrg_get_namespace (from Identifiers Org Tools)
IdentifiersOrg_list_namespaces (from Identifiers Org Tools)
IdentifiersOrg_resolve (from Identifiers Org Tools)
IdentifiersOrg_search_namespaces (from Identifiers Org Tools)
InspireHEP_search_papers (from Inspirehep Tools)
InterMine_run_pathquery (from Humanmine Tools)
JPLHorizons_get_body_data (from Jpl Horizons Tools)
JPLHorizons_lookup_object (from Jpl Horizons Tools)
KLIFS_get_kinase (from Klifs Tools)
KLIFS_get_ligands (from Klifs Tools)
KLIFS_get_structures (from Klifs Tools)
KLIFS_get_structures_by_pdb (from Klifs Tools)
KLIFS_list_kinases (from Klifs Tools)
LOTUS_get_compound (from Lotus Tools)
LOTUS_search_by_inchikey (from Lotus Tools)
LOTUS_search_natural_products (from Lotus Tools)
LitVar_get_variant_details (from Litvar Tools)
LitVar_get_variant_publications (from Litvar Tools)
LitVar_search_variants (from Litvar Tools)
MAGICapp_get_guideline (from Clinical Guidelines Tools)
MAGICapp_get_recommendations (from Clinical Guidelines Tools)
MAGICapp_get_sections (from Clinical Guidelines Tools)
MAGICapp_list_guidelines (from Clinical Guidelines Tools)
MIBiG_get_stats (from Mibig Tools)
MIBiG_list_clusters (from Mibig Tools)
MSigDB_get_geneset (from Msigdb Tools)
MSigDB_get_hallmark_geneset (from Msigdb Tools)
MarineRegions_get_record (from Marine Regions Tools)
MarineRegions_search_by_name (from Marine Regions Tools)
MassBank_get_record_by_accession (from Massbank Tools)
MassBank_search_by_compound (from Massbank Tools)
MassBank_search_by_formula (from Massbank Tools)
MassBank_search_records_advanced (from Massbank Tools)
MassBank_spectral_similarity_search (from Massbank Tools)
MetNorway_get_forecast (from Metnorway Tools)
ModelDB_get_celltype (from Modeldb Tools)
ModelDB_get_model (from Modeldb Tools)
ModelDB_get_paper (from Modeldb Tools)
ModelDB_list_celltypes (from Modeldb Tools)
ModelDB_list_models (from Modeldb Tools)
MouseMine_search (from Mousemine Tools)
MouseMine_search_alleles (from Mousemine Tools)
MouseMine_search_genes (from Mousemine Tools)
NASACMR_search_collections (from Nasa Cmr Tools)
NASACMR_search_granules (from Nasa Cmr Tools)
NASAEONET_get_categories (from Nasa Eonet Tools)
NASAEONET_get_events (from Nasa Eonet Tools)
NASAExoplanet_query_planets (from Nasa Exoplanet Tools)
NASAExoplanet_query_stars (from Nasa Exoplanet Tools)
NASANED_lookup_object (from Nasa Ned Tools)
NASASBDB_close_approaches (from Nasa Sbdb Tools)
NASASBDB_get_body (from Nasa Sbdb Tools)
NASA_DONKI_get_coronal_mass_ejections (from Nasa Donki Tools)
NASA_DONKI_get_geomagnetic_storms (from Nasa Donki Tools)
NASA_DONKI_get_high_speed_streams (from Nasa Donki Tools)
NASA_DONKI_get_interplanetary_shocks (from Nasa Donki Tools)
NASA_DONKI_get_solar_energetic_particles (from Nasa Donki Tools)
NASA_DONKI_get_solar_flares (from Nasa Donki Tools)
NCBIGene_get_summary (from Ncbi Gene Tools)
NCBIGene_search (from Ncbi Gene Tools)
NCBIProtein_get_summary (from Ncbi Gene Tools)
NCIDrugDict_get_drug (from Nci Drugdict Tools)
NCIDrugDict_search (from Nci Drugdict Tools)
NCI_expand_drugs_by_letter (from Clinical Guidelines Tools)
NCI_get_drug_by_name (from Clinical Guidelines Tools)
NCI_search_cancer_resources (from Clinical Guidelines Tools)
NWS_get_active_alerts (from Nws Tools)
NWS_get_forecast (from Nws Tools)
NWS_get_point_metadata (from Nws Tools)
NeuroVault_get_atlas (from Neurovault Tools)
NeuroVault_get_collection (from Neurovault Tools)
NeuroVault_get_image (from Neurovault Tools)
NeuroVault_list_atlases (from Neurovault Tools)
NeuroVault_list_collection_images (from Neurovault Tools)
NeuroVault_list_collections (from Neurovault Tools)
Nominatim_geocode (from Nominatim Tools)
Nominatim_reverse_geocode (from Nominatim Tools)
OmicsDI_get_dataset (from Omicsdi Tools)
OmicsDI_get_statistics (from Omicsdi Tools)
OmicsDI_search_datasets (from Omicsdi Tools)
OpenCitations_get_citation_count (from Opencitations Tools)
OpenCitations_get_citations (from Opencitations Tools)
OpenCitations_get_references (from Opencitations Tools)
OpenFDA_search_animalvet_adverse_events (from Openfda Tools)
OpenFDA_search_device_510k (from Openfda Tools)
OpenFDA_search_device_adverse_events (from Openfda Tools)
OpenFDA_search_device_enforcement (from Openfda Tools)
OpenFDA_search_device_recalls (from Openfda Tools)
OpenFDA_search_drug_enforcement (from Openfda Tools)
OpenFDA_search_drug_labels (from Openfda Tools)
OpenFDA_search_drug_ndc (from Openfda Tools)
OpenFDA_search_drug_shortages (from Openfda Tools)
OpenFDA_search_food_adverse_events (from Openfda Tools)
OpenFDA_search_food_enforcement (from Openfda Tools)
OpenFoodFacts_filter_products_by_tags (from Openfoodfacts Tools)
OpenFoodFacts_get_product (from Openfoodfacts Tools)
OpenFoodFacts_search_products (from Openfoodfacts Tools)
OpenML_get_dataset (from Openml Tools)
OpenML_search_datasets (from Openml Tools)
OpenMeteo_geocode_location (from Open Meteo Tools)
OpenMeteo_get_air_quality (from Open Meteo Airquality Tools)
OpenMeteo_get_air_quality (from Open Meteo Tools)
OpenMeteo_get_flood_forecast (from Open Meteo Flood Tools)
OpenMeteo_get_historical_climate (from Open Meteo Climate Tools)
OpenMeteo_get_historical_weather (from Open Meteo Tools)
OpenMeteo_get_marine_forecast (from Open Meteo Marine Tools)
OpenMeteo_get_weather_forecast (from Open Meteo Tools)
OpenTopoData_get_elevation (from Opentopodata Tools)
PDB_REDO_get_structure_quality (from Pdb Redo Tools)
PDB_REDO_get_version_info (from Pdb Redo Tools)
PDBe_get_bound_molecules (from Pdbe Graph Tools)
PDBe_get_compound_details (from Pdbe Graph Tools)
PDBe_get_funpdbe_annotations (from Pdbe Graph Tools)
PDBe_get_uniprot_mappings (from Pdbe Graph Tools)
PDBe_get_uniprot_structure_coverage (from Pdbe Graph Tools)
POWO_get_taxon (from Powo Tools)
POWO_search_plants (from Powo Tools)
PanelApp_get_panel (from Panelapp Tools)
PanelApp_search_genes (from Panelapp Tools)
PanelApp_search_panels (from Panelapp Tools)
PharmVar_get_alleles (from Pharmvar Tools)
PharmVar_list_genes (from Pharmvar Tools)
PubTator3_GetEntityRelations (from Pubtator3 Ext Tools)
PubTator3_get_annotations (from Pubtator3 Ext Tools)
RCSB_get_chemical_component (from Rcsb Chemcomp Tools)
ROR_get_organization (from Ror Tools)
ROR_match_affiliation (from Ror Tools)
ROR_search_organizations (from Ror Tools)
SDSS_sql_search (from Sdss Tools)
STRING_get_interaction_partners (from String Network Tools)
STRING_get_network (from String Network Tools)
ScanProsite_scan_protein (from Scanprosite Tools)
SemanticScholar_get_author (from Semantic Scholar Ext Tools)
SemanticScholar_get_author_papers (from Semantic Scholar Ext Tools)
SemanticScholar_get_paper (from Semantic Scholar Ext Tools)
SemanticScholar_get_paper_citations (from Semantic Scholar Ext Tools)
SemanticScholar_get_paper_references (from Semantic Scholar Ext Tools)
SemanticScholar_get_recommendations (from Semantic Scholar Ext Tools)
SemanticScholar_search_authors (from Semantic Scholar Ext Tools)
SoilGrids_get_properties (from Soilgrids Tools)
SunriseSunset_get_times (from Sunrise Sunset Tools)
TCIA_get_body_part_values (from Tcia Tools)
TCIA_get_manufacturer_values (from Tcia Tools)
TCIA_get_modality_values (from Tcia Tools)
TCIA_get_patient_studies (from Tcia Tools)
TCIA_get_patients (from Tcia Tools)
TCIA_get_series (from Tcia Tools)
TCIA_get_series_metadata (from Tcia Tools)
TCIA_get_series_size (from Tcia Tools)
TCIA_get_sop_instance_uids (from Tcia Tools)
TCIA_list_collections (from Tcia Tools)
TargetMine_search (from Targetmine Tools)
TargetMine_search_genes (from Targetmine Tools)
USCensus_get_population (from Uscensus Tools)
USGSWater_get_streamflow (from Usgs Water Tools)
USGSWater_get_water_level (from Usgs Water Tools)
USGSWater_get_water_temperature (from Usgs Water Tools)
USGS_get_earthquake_feed (from Usgs Earthquake Tools)
USGS_query_earthquakes (from Usgs Earthquake Tools)
UniProt_get_proteome (from Uniprot Proteomes Tools)
UniProt_search_proteomes (from Uniprot Proteomes Tools)
VEuPathDB_list_gene_searches (from Veupathdb Tools)
VEuPathDB_list_organism_searches (from Veupathdb Tools)
VEuPathDB_list_record_types (from Veupathdb Tools)
VariantValidator_format_genomic_to_transcripts (from Variant Validator Tools)
VariantValidator_gene2transcripts (from Variant Validator Tools)
VariantValidator_validate_variant (from Variant Validator Tools)
WAQI_get_air_quality (from Waqi Tools)
WHOGHO_get_indicator_data (from Who Gho Tools)
WHOGHO_list_dimension_values (from Who Gho Tools)
WHOGHO_search_indicators (from Who Gho Tools)
Wikidata_get_entity (from Wikidata Entity Tools)
Wikidata_search_entities (from Wikidata Entity Tools)
Wikipedia_get_featured_content (from Wikipedia Ext Tools)
WorldBank_get_country (from Worldbank Tools)
WorldBank_get_indicator (from Worldbank Tools)
WorldBank_search_indicators (from Worldbank Tools)
eBird_get_taxon_groups (from Ebird Taxonomy Tools)
eBird_get_taxonomy (from Ebird Taxonomy Tools)
eQTL_get_associations (from Eqtl Tools)
eQTL_list_datasets (from Eqtl Tools)
iCite_get_publications (from Icite Tools)
scite_get_tallies (from Scite Tools)

BgeeTool (3 tools)#

Local Tools:

Bgee_get_gene_expression (from Bgee Tools)
Bgee_list_species (from Bgee Tools)
Bgee_search_genes (from Bgee Tools)

BiGGModelsTool (8 tools)#

Local Tools:

BiGG_download_model (from Bigg Models Tools)
BiGG_get_database_version (from Bigg Models Tools)
BiGG_get_metabolite (from Bigg Models Tools)
BiGG_get_model (from Bigg Models Tools)
BiGG_get_model_reactions (from Bigg Models Tools)
BiGG_get_reaction (from Bigg Models Tools)
BiGG_list_models (from Bigg Models Tools)
BiGG_search (from Bigg Models Tools)

BinaryDownloadTool (1 tools)#

Local Tools:

download_binary_file (from File Download Tools)

BindingDBTool (5 tools)#

Local Tools:

BindingDB_get_ligands_by_pdb (from Bindingdb Tools)
BindingDB_get_ligands_by_uniprot (from Bindingdb Tools)
BindingDB_get_ligands_by_uniprots (from Bindingdb Tools)
BindingDB_get_targets_by_compound (from Bindingdb Tools)
BindingDB_search_by_target (from Bindingdb Tools)

BioGRIDRESTTool (4 tools)#

Local Tools:

BioGRID_get_chemical_interactions (from Biogrid Tools)
BioGRID_get_interactions (from Biogrid Tools)
BioGRID_get_ptms (from Biogrid Tools)
BioGRID_search_by_pubmed (from Biogrid Tools)

BioImageArchiveTool (4 tools)#

Local Tools:

BioImageArchive_get_study (from Bioimage Archive Tools)
BioImageArchive_list_study_files (from Bioimage Archive Tools)
BioImageArchive_search_bioimages (from Bioimage Archive Tools)
BioImageArchive_search_studies (from Bioimage Archive Tools)

BioModelsRESTTool (6 tools)#

Local Tools:

BioModels_download_model (from Biomodels Tools)
BioModels_get_model (from Biomodels Tools)
BioModels_list_all_model_ids (from Biomodels Tools)
BioModels_list_files (from Biomodels Tools)
BioModels_search_parameters (from Biomodels Tools)
biomodels_search (from Biomodels Tools)

BioPortalTool (4 tools)#

Local Tools:

BioPortal_annotate_text (from Bioportal Tools)
BioPortal_get_concept (from Bioportal Tools)
BioPortal_get_hierarchy (from Bioportal Tools)
BioPortal_search_ontology_terms (from Bioportal Tools)

BioRxivTool (2 tools)#

Local Tools:

BioRxiv_get_preprint (from Biorxiv Tools)
MedRxiv_get_preprint (from Medrxiv Tools)

BioSamplesTool (5 tools)#

Local Tools:

BioSamples_get_facets (from Biosamples Tools)
BioSamples_get_relationships (from Biosamples Tools)
BioSamples_get_sample (from Biosamples Tools)
BioSamples_search (from Biosamples Tools)
BioSamples_search_by_filter (from Biosamples Tools)

BioStudiesRESTTool (4 tools)#

Local Tools:

biostudies_get_study (from Biostudies Tools)
biostudies_get_study_files (from Biostudies Tools)
biostudies_search (from Biostudies Tools)
biostudies_search_by_collection (from Biostudies Tools)

BioregistryTool (4 tools)#

Local Tools:

Bioregistry_get_prefix_mappings (from Bioregistry Tools)
Bioregistry_get_registry (from Bioregistry Tools)
Bioregistry_resolve_reference (from Bioregistry Tools)
Bioregistry_search_registries (from Bioregistry Tools)

BridgeDbTool (3 tools)#

Local Tools:

BridgeDb_attributes (from Bridgedb Tools)
BridgeDb_search (from Bridgedb Tools)
BridgeDb_xrefs (from Bridgedb Tools)

CADDTool (3 tools)#

Local Tools:

CADD_get_position_scores (from Cadd Tools)
CADD_get_range_scores (from Cadd Tools)
CADD_get_variant_score (from Cadd Tools)

CATHTool (4 tools)#

Local Tools:

CATH_get_domain_summary (from Cath Tools)
CATH_get_funfam (from Cath Tools)
CATH_get_superfamily (from Cath Tools)
CATH_list_funfams (from Cath Tools)

CBioPortalRESTTool (14 tools)#

Local Tools:

cBioPortal_get_cancer_studies (from Cbioportal Tools)
cBioPortal_get_cancer_types (from Cbioportal Tools)
cBioPortal_get_clinical_attributes (from Cbioportal Tools)
cBioPortal_get_clinical_data (from Cbioportal Tools)
cBioPortal_get_copy_number_alterations (from Cbioportal Tools)
cBioPortal_get_gene_info (from Cbioportal Tools)
cBioPortal_get_gene_panel_genes (from Cbioportal Tools)
cBioPortal_get_gene_panels (from Cbioportal Tools)
cBioPortal_get_genes (from Cbioportal Tools)
cBioPortal_get_molecular_profiles (from Cbioportal Tools)
cBioPortal_get_mutations (from Cbioportal Tools)
cBioPortal_get_patients (from Cbioportal Tools)
cBioPortal_get_sample_lists (from Cbioportal Tools)
cBioPortal_get_samples (from Cbioportal Tools)

CDCRESTTool (3 tools)#

Local Tools:

cdc_data_aggregate (from Cdc Tools)
cdc_data_get_dataset (from Cdc Tools)
cdc_data_search_datasets (from Cdc Tools)

CELLxGENECensusTool (7 tools)#

Local Tools:

CELLxGENE_download_h5ad (from Cellxgene Census Tools)
CELLxGENE_get_cell_metadata (from Cellxgene Census Tools)
CELLxGENE_get_census_versions (from Cellxgene Census Tools)
CELLxGENE_get_embeddings (from Cellxgene Census Tools)
CELLxGENE_get_expression_data (from Cellxgene Census Tools)
CELLxGENE_get_gene_metadata (from Cellxgene Census Tools)
CELLxGENE_get_presence_matrix (from Cellxgene Census Tools)

CIViCTool (12 tools)#

Local Tools:

civic_get_assertion (from Civic Tools)
civic_get_evidence_item (from Civic Tools)
civic_get_molecular_profile (from Civic Tools)
civic_get_variant (from Civic Tools)
civic_get_variants_by_gene (from Civic Tools)
civic_search_assertions (from Civic Tools)
civic_search_diseases (from Civic Tools)
civic_search_evidence_items (from Civic Tools)
civic_search_genes (from Civic Tools)
civic_search_molecular_profiles (from Civic Tools)
civic_search_therapies (from Civic Tools)
civic_search_variants (from Civic Tools)

CMAGuidelinesTool (1 tools)#

Local Tools:

CMA_Guidelines_Search (from Unified Guideline Tools)

CODTool (2 tools)#

Local Tools:

COD_get_structure (from Cod Crystal Tools)
COD_search_structures (from Cod Crystal Tools)

COSMICTool (2 tools)#

Local Tools:

COSMIC_get_mutations_by_gene (from Cosmic Tools)
COSMIC_search_mutations (from Cosmic Tools)

CPICGetRecommendationsTool (1 tools)#

Local Tools:

CPIC_get_recommendations (from Cpic Tools)

CPICListGuidelinesTool (1 tools)#

Local Tools:

CPIC_list_guidelines (from Cpic Tools)

CPICSearchPairsTool (2 tools)#

Local Tools:

CPIC_get_gene_drug_pairs (from Cpic Tools)
CPIC_search_gene_drug_pairs (from Cpic Tools)

CTDTool (5 tools)#

Local Tools:

CTD_get_chemical_diseases (from Ctd Tools)
CTD_get_chemical_gene_interactions (from Ctd Tools)
CTD_get_disease_chemicals (from Ctd Tools)
CTD_get_gene_chemicals (from Ctd Tools)
CTD_get_gene_diseases (from Ctd Tools)

CTFPHCListGuidelinesTool (1 tools)#

Local Tools:

CTFPHC_list_guidelines (from Unified Guideline Tools)

CTFPHCSearchGuidelinesTool (1 tools)#

Local Tools:

CTFPHC_search_guidelines (from Unified Guideline Tools)

CTISGetTrialTool (1 tools)#

Local Tools:

CTIS_get_trial (from Ctis Tools)

CTISSearchTrialsTool (2 tools)#

Local Tools:

CTIS_search_trials (from Ctis Tools)
CTIS_search_trials_filtered (from Ctis Tools)

CancerPPD2SearchPeptidesTool (1 tools)#

Local Tools:

CancerPPD2_search_peptides (from Cancerppd2 Tools)

CancerPrognosisTool (4 tools)#

Local Tools:

CancerPrognosis_get_gene_expression (from Cancer Prognosis Tools)
CancerPrognosis_get_study_summary (from Cancer Prognosis Tools)
CancerPrognosis_get_survival_data (from Cancer Prognosis Tools)
CancerPrognosis_search_studies (from Cancer Prognosis Tools)

CancerVarTool (1 tools)#

Local Tools:

CancerVar_classify_variant (from Cancervar Tools)

CellMarkerTool (4 tools)#

Local Tools:

CellMarker_list_cell_types (from Cellmarker Tools)
CellMarker_search_by_cell_type (from Cellmarker Tools)
CellMarker_search_by_gene (from Cellmarker Tools)
CellMarker_search_cancer_markers (from Cellmarker Tools)

CellPaintingTool (3 tools)#

Local Tools:

CellPainting_get_screen_plates (from Cellpainting Tools)
CellPainting_get_well_data (from Cellpainting Tools)
CellPainting_search_screens (from Cellpainting Tools)

CellosaurusGetCellLineInfoTool (1 tools)#

Local Tools:

cellosaurus_get_cell_line_info (from Cellosaurus Tools)

CellosaurusQueryConverterTool (1 tools)#

Local Tools:

cellosaurus_query_converter (from Cellosaurus Tools)

CellosaurusSearchTool (1 tools)#

Local Tools:

cellosaurus_search_cell_lines (from Cellosaurus Tools)

CellposeTool (1 tools)#

Local Tools:

Cellpose_segment_image (from Cellpose Tools)

CellxGeneDiscoveryTool (3 tools)#

Local Tools:

CxGDisc_get_collection (from Cellxgene Discovery Tools)
CxGDisc_list_collections (from Cellxgene Discovery Tools)
CxGDisc_search_datasets (from Cellxgene Discovery Tools)

ChEBITool (4 tools)#

Local Tools:

ChEBI_get_compound (from Chebi Tools)
ChEBI_get_ontology_children (from Chebi Tools)
ChEBI_get_ontology_parents (from Chebi Tools)
ChEBI_search (from Chebi Tools)

ChEMBLRESTTool (28 tools)#

Local Tools:

ChEMBL_get_activity (from Chembl Tools)
ChEMBL_get_assay (from Chembl Tools)
ChEMBL_get_assay_activities (from Chembl Tools)
ChEMBL_get_compound_record (from Chembl Tools)
ChEMBL_get_compound_record_activities (from Chembl Tools)
ChEMBL_get_drug (from Chembl Tools)
ChEMBL_get_drug_mechanisms (from Chembl Tools)
ChEMBL_get_molecule (from Chembl Tools)
ChEMBL_get_molecule_image (from Chembl Tools)
ChEMBL_get_molecule_targets (from Chembl Tools)
ChEMBL_get_target (from Chembl Tools)
ChEMBL_get_target_activities (from Chembl Tools)
ChEMBL_get_target_assays (from Chembl Tools)
ChEMBL_search_activities (from Chembl Tools)
ChEMBL_search_assays (from Chembl Tools)
ChEMBL_search_atc_classification (from Chembl Tools)
ChEMBL_search_binding_sites (from Chembl Tools)
ChEMBL_search_cell_lines (from Chembl Tools)
ChEMBL_search_compound_structural_alerts (from Chembl Tools)
ChEMBL_search_documents (from Chembl Tools)
ChEMBL_search_drugs (from Chembl Tools)
ChEMBL_search_mechanisms (from Chembl Tools)
ChEMBL_search_molecules (from Chembl Tools)
ChEMBL_search_protein_classification (from Chembl Tools)
ChEMBL_search_similarity (from Chembl Tools)
ChEMBL_search_substructure (from Chembl Tools)
ChEMBL_search_targets (from Chembl Tools)
ChEMBL_search_tissue (from Chembl Tools)

ChEMBLTool (1 tools)#

Local Tools:

ChEMBL_search_similar_molecules (from Chembl Tools)

ChIPAtlasTool (7 tools)#

Local Tools:

ChIPAtlas_enrichment_analysis (from Chipatlas Tools)
ChIPAtlas_get_colocalization (from Chipatlas Tools)
ChIPAtlas_get_experiment_metadata (from Chipatlas Tools)
ChIPAtlas_get_experiments (from Chipatlas Tools)
ChIPAtlas_get_peak_data (from Chipatlas Tools)
ChIPAtlas_get_target_genes (from Chipatlas Tools)
ChIPAtlas_search_datasets (from Chipatlas Tools)

ChemComputeTool (1 tools)#

Local Tools:

Chem_sa_score (from Chem Compute Tools)

ClassyFireTool (1 tools)#

Local Tools:

ClassyFire_classify_by_inchikey (from Classyfire Tools)

ClinGenARTool (3 tools)#

Local Tools:

ClinGenAR_get_external_records (from Clingen Ar Tools)
ClinGenAR_lookup_allele (from Clingen Ar Tools)
ClinGenAR_lookup_by_external_id (from Clingen Ar Tools)

ClinGenAlleleTool (2 tools)#

Local Tools:

ClinGenAllele_get_allele (from Clingen Allele Tools)
ClinGenAllele_lookup_hgvs (from Clingen Allele Tools)

ClinGenDosageTool (2 tools)#

Local Tools:

ClinGen_dosage_by_gene (from Clingen Dosage Api Tools)
ClinGen_dosage_region_search (from Clingen Dosage Api Tools)

ClinGenTool (8 tools)#

Local Tools:

ClinGen_get_actionability_adult (from Clingen Tools)
ClinGen_get_actionability_pediatric (from Clingen Tools)
ClinGen_get_dosage_sensitivity (from Clingen Tools)
ClinGen_get_gene_validity (from Clingen Tools)
ClinGen_get_variant_classifications (from Clingen Tools)
ClinGen_search_actionability (from Clingen Tools)
ClinGen_search_dosage_sensitivity (from Clingen Tools)
ClinGen_search_gene_validity (from Clingen Tools)

ClinVarGetClinicalSignificance (1 tools)#

Local Tools:

ClinVar_get_clinical_significance (from Clinvar Tools)

ClinVarGetVariantDetails (1 tools)#

Local Tools:

ClinVar_get_variant_details (from Clinvar Tools)

ClinVarSearchVariants (1 tools)#

Local Tools:

ClinVar_search_variants (from Clinvar Tools)

ClinVarSubmittedRecordsTool (1 tools)#

Local Tools:

ClinVar_get_submitted_records (from Clinvar Submitted Tools)

ClinicalCalculatorTool (10 tools)#

Local Tools:

ClinicalCalc_ASCVD_risk (from Clinical Calculators Tools)
ClinicalCalc_CHA2DS2_VASc (from Clinical Calculators Tools)
ClinicalCalc_CURB_65 (from Clinical Calculators Tools)
ClinicalCalc_Child_Pugh (from Clinical Calculators Tools)
ClinicalCalc_HAS_BLED (from Clinical Calculators Tools)
ClinicalCalc_MELD_Na (from Clinical Calculators Tools)
ClinicalCalc_Wells_DVT (from Clinical Calculators Tools)
ClinicalCalc_Wells_PE (from Clinical Calculators Tools)
ClinicalCalc_eGFR_CKD_EPI (from Clinical Calculators Tools)
ClinicalCalc_qSOFA (from Clinical Calculators Tools)

ClinicalTablesTool (3 tools)#

Local Tools:

DiseaseNames_search (from Clinical Tables Tools)
HealthConditions_search (from Clinical Tables Tools)
RxTerms_search_drugs (from Clinical Tables Tools)

ClinicalTrialAESeverityTestTool (1 tools)#

Local Tools:

clinical_trial_ae_severity_test (from Clinical Trial Stats Tools)

ClinicalTrialsDetailsTool (9 tools)#

Local Tools:

extract_clinical_trial_adverse_events (from Clinicaltrials Gov Tools)
extract_clinical_trial_outcomes (from Clinicaltrials Gov Tools)
get_clinical_trial_conditions_and_interventions (from Clinicaltrials Gov Tools)
get_clinical_trial_descriptions (from Clinicaltrials Gov Tools)
get_clinical_trial_eligibility_criteria (from Clinicaltrials Gov Tools)
get_clinical_trial_locations (from Clinicaltrials Gov Tools)
get_clinical_trial_outcome_measures (from Clinicaltrials Gov Tools)
get_clinical_trial_references (from Clinicaltrials Gov Tools)
get_clinical_trial_status_and_dates (from Clinicaltrials Gov Tools)

ClinicalTrialsSearchTool (1 tools)#

Local Tools:

search_clinical_trials (from Clinicaltrials Gov Tools)

ClinicalTrialsTool (6 tools)#

Local Tools:

ClinicalTrials_get_database_stats (from Clinicaltrials Gov Tools)
ClinicalTrials_get_field_values (from Clinicaltrials Gov Tools)
ClinicalTrials_get_study (from Clinicaltrials Gov Tools)
ClinicalTrials_search_by_intervention (from Clinicaltrials Gov Tools)
ClinicalTrials_search_by_sponsor (from Clinicaltrials Gov Tools)
ClinicalTrials_search_studies (from Clinicaltrials Gov Tools)

ClueTool (5 tools)#

Local Tools:

CLUE_get_cell_lines (from Clue Tools)
CLUE_get_gene_expression (from Clue Tools)
CLUE_get_perturbation (from Clue Tools)
CLUE_search_compounds (from Clue Tools)
CLUE_search_signatures (from Clue Tools)

ClusProSubmitPeptideDockingTool (1 tools)#

Local Tools:

ClusPro_submit_peptide_docking (from Cluspro Tools)

CodingVariantFractionTool (1 tools)#

Local Tools:

coding_variant_fraction (from Variant Fraction Tools)

CoexpressionModuleTool (1 tools)#

Local Tools:

Coexpression_modules (from Coexpression Module Tools)

ColocalizationTool (1 tools)#

Local Tools:

Coloc_abf_test (from Colocalization Tools)

ComplexPortalTool (2 tools)#

Local Tools:

ComplexPortal_get_complex (from Complex Portal Tools)
ComplexPortal_search_complexes (from Complex Portal Tools)

ComposeTool (11 tools)#

Local Tools:

BiomarkerDiscoveryWorkflow (from Compose Tools)
ComprehensiveDrugDiscoveryPipeline (from Compose Tools)
DrugSafetyAnalyzer (from Compose Tools)
LiteratureSearchTool (from Compose Tools)
MultiAgentLiteratureSearch (from Literature Search Tools)
OutputSummarizationComposer (from Output Summarization Tools)
ToolDescriptionOptimizer (from Optimizer Tools)
ToolDiscover (from Tool Discovery Agents)
ToolGraphComposer (from Tool Composition Tools)
ToolGraphGenerationPipeline (from Compose Tools)
ToolMetadataGenerationPipeline (from Compose Tools)

CompoundDiseaseProfileTool (1 tools)#

Local Tools:

gather_disease_profile (from Compound Disease Tools)

CompoundGeneDiseaseAssociationTool (1 tools)#

Local Tools:

gather_gene_disease_associations (from Compound Gene Disease Tools)

CompoundVariantAnnotationTool (1 tools)#

Local Tools:

annotate_variant_multi_source (from Compound Variant Tools)

ConoServerGetConopeptideTool (1 tools)#

Local Tools:

ConoServer_get_conopeptide (from Conoserver Tools)

ConoServerSearchConopeptidesTool (1 tools)#

Local Tools:

ConoServer_search_conopeptides (from Conoserver Tools)

CorePDFSnippetsTool (1 tools)#

Local Tools:

CORE_get_fulltext_snippets (from Core Tools)

CoreTool (1 tools)#

Local Tools:

CORE_search_papers (from Core Tools)

CrossrefRESTTool (8 tools)#

Local Tools:

Crossref_get_funder (from Crossref Tools)
Crossref_get_journal (from Crossref Tools)
Crossref_get_member (from Crossref Tools)
Crossref_get_work (from Crossref Tools)
Crossref_list_funders (from Crossref Tools)
Crossref_list_types (from Crossref Tools)
Crossref_search_members (from Crossref Tools)
Crossref_search_works (from Crossref Tools)

CryoETTool (7 tools)#

Local Tools:

CryoET_get_dataset (from Cryoet Tools)
CryoET_list_annotations (from Cryoet Tools)
CryoET_list_datasets (from Cryoet Tools)
CryoET_list_depositions (from Cryoet Tools)
CryoET_list_runs (from Cryoet Tools)
CryoET_list_tiltseries (from Cryoet Tools)
CryoET_list_tomograms (from Cryoet Tools)

CrystalStructureTool (1 tools)#

Local Tools:

CrystalStructure_validate (from Crystal Structure Tools)

DBAASPGetPeptideTool (1 tools)#

Local Tools:

DBAASP_get_peptide (from Dbaasp Tools)

DBAASPSearchPeptidesTool (1 tools)#

Local Tools:

DBAASP_search_peptides (from Dbaasp Tools)

DBLPTool (1 tools)#

Local Tools:

DBLP_search_publications (from Dblp Tools)

DBpediaSPARQLTool (1 tools)#

Local Tools:

DBpedia_SPARQL_query (from Dbpedia Tools)

DESeq2Tool (1 tools)#

Local Tools:

run_deseq2_analysis (from Deseq2 Tools)

DGIdbTool (4 tools)#

Local Tools:

DGIdb_get_drug_gene_interactions (from Dgidb Tools)
DGIdb_get_drug_info (from Dgidb Tools)
DGIdb_get_gene_druggability (from Dgidb Tools)
DGIdb_get_gene_info (from Dgidb Tools)

DNATool (10 tools)#

Local Tools:

DNA_calculate_gc_content (from Dna Tools)
DNA_codon_optimize (from Dna Tools)
DNA_find_orfs (from Dna Tools)
DNA_find_restriction_sites (from Dna Tools)
DNA_gibson_design (from Dna Tools)
DNA_golden_gate_design (from Dna Tools)
DNA_primer_design (from Dna Tools)
DNA_reverse_complement (from Dna Tools)
DNA_translate_sequence (from Dna Tools)
DNA_virtual_digest (from Dna Tools)

DOAJTool (1 tools)#

Local Tools:

DOAJ_search_articles (from Doaj Tools)

DTUProteinTool (1 tools)#

Local Tools:

dtu_protein_predict (from Dtu Protein Tools)

DailyMedSPLParserTool (5 tools)#

Local Tools:

DailyMed_parse_adverse_reactions (from Dailymed Tools)
DailyMed_parse_clinical_pharmacology (from Dailymed Tools)
DailyMed_parse_contraindications (from Dailymed Tools)
DailyMed_parse_dosing (from Dailymed Tools)
DailyMed_parse_drug_interactions (from Dailymed Tools)

DataCiteRESTTool (4 tools)#

Local Tools:

DataCite_get_dataset (from Datacite Tools)
DataCite_get_doi (from Datacite Tools)
DataCite_search_datasets (from Datacite Tools)
DataCite_search_dois (from Datacite Tools)

DataGovTool (1 tools)#

Local Tools:

DataGov_search_datasets (from Datagov Tools)

DataQualityTool (1 tools)#

Local Tools:

DataQuality_assess (from Data Quality Tools)

DatasetTool (7 tools)#

Local Tools:

dict_search (from Dataset Tools)
dili_search (from Dataset Tools)
diqt_search (from Dataset Tools)
drugbank_full_search (from Dataset Tools)
drugbank_links_search (from Dataset Tools)
drugbank_vocab_filter (from Dataset Tools)
drugbank_vocab_search (from Dataset Tools)

DbfetchRESTTool (4 tools)#

Local Tools:

dbfetch_fetch_batch (from Dbfetch Tools)
dbfetch_fetch_entry (from Dbfetch Tools)
dbfetch_list_databases (from Dbfetch Tools)
dbfetch_list_formats (from Dbfetch Tools)

DecouplerULMTool (1 tools)#

Local Tools:

Activity_infer_ulm (from Decoupler Ulm Tools)

DeepGOTool (1 tools)#

Local Tools:

DeepGO_predict_function (from Deepgo Tools)

DegreesOfUnsaturationTool (1 tools)#

Local Tools:

DegreesOfUnsaturation_calculate (from Degrees Of Unsaturation Tools)

DepMapTool (5 tools)#

Local Tools:

DepMap_get_cell_line (from Depmap Tools)
DepMap_get_cell_lines (from Depmap Tools)
DepMap_get_gene_dependencies (from Depmap Tools)
DepMap_search_cell_lines (from Depmap Tools)
DepMap_search_genes (from Depmap Tools)

DfamTool (3 tools)#

Local Tools:

Dfam_get_annotations (from Dfam Tools)
Dfam_get_family (from Dfam Tools)
Dfam_search_families (from Dfam Tools)

DisGeNETTool (5 tools)#

Local Tools:

DisGeNET_get_disease_genes (from Disgenet Tools)
DisGeNET_get_gda (from Disgenet Tools)
DisGeNET_get_vda (from Disgenet Tools)
DisGeNET_search_disease (from Disgenet Tools)
DisGeNET_search_gene (from Disgenet Tools)

DisProtTool (2 tools)#

Local Tools:

DisProt_get_entry (from Disprot Tools)
DisProt_search (from Disprot Tools)

DiseaseOntologyTool (2 tools)#

Local Tools:

DiseaseOntology_get_parents (from Disease Ontology Tools)
DiseaseOntology_get_term (from Disease Ontology Tools)

DiseaseTargetScoreTool (10 tools)#

Local Tools:

cancer_biomarkers_disease_target_score (from Disease Target Score Tools)
cancer_gene_census_disease_target_score (from Disease Target Score Tools)
chembl_disease_target_score (from Disease Target Score Tools)
disease_target_score (from Disease Target Score Tools)
europepmc_disease_target_score (from Disease Target Score Tools)
eva_disease_target_score (from Disease Target Score Tools)
eva_somatic_disease_target_score (from Disease Target Score Tools)
expression_atlas_disease_target_score (from Disease Target Score Tools)
genomics_england_disease_target_score (from Disease Target Score Tools)
reactome_disease_target_score (from Disease Target Score Tools)

DnDsTool (1 tools)#

Local Tools:

Sequence_dn_ds (from Dn Ds Tools)

DoseResponseTool (3 tools)#

Local Tools:

DoseResponse_calculate_ic50 (from Dose Response Tools)
DoseResponse_compare_potency (from Dose Response Tools)
DoseResponse_fit_curve (from Dose Response Tools)

DrugCentralTool (3 tools)#

Local Tools:

DrugCentral_get_drug (from Drugcentral Tools)
DrugCentral_get_targets (from Drugcentral Tools)
DrugCentral_search (from Drugcentral Tools)

DrugPropertiesTool (3 tools)#

Local Tools:

DrugProps_calculate_qed (from Drug Properties Tools)
DrugProps_lipinski_filter (from Drug Properties Tools)
DrugProps_pains_filter (from Drug Properties Tools)

DrugSynergyTool (5 tools)#

Local Tools:

DrugSynergy_calculate_bliss (from Drug Synergy Tools)
DrugSynergy_calculate_ci (from Drug Synergy Tools)
DrugSynergy_calculate_hsa (from Drug Synergy Tools)
DrugSynergy_calculate_loewe (from Drug Synergy Tools)
DrugSynergy_calculate_zip (from Drug Synergy Tools)

DynaMut2Tool (2 tools)#

Local Tools:

DynaMut2_get_job (from Dynamut2 Tools)
DynaMut2_predict_stability (from Dynamut2 Tools)

DynamicPackageDiscovery (1 tools)#

Local Tools:

dynamic_package_discovery (from Package Discovery Tools)

EBIMSATool (1 tools)#

Local Tools:

EBI_msa_align (from Ebi Alignment Tools)

EBIPhylogenyTool (1 tools)#

Local Tools:

EBI_build_phylogenetic_tree (from Ebi Alignment Tools)

EBIProteinsCoordinatesTool (2 tools)#

Local Tools:

EBIProteins_get_coordinate_mapping (from Ebi Proteins Coordinates Tools)
EBIProteins_get_proteins_by_genomic_loc (from Ebi Proteins Coordinates Tools)

EBIProteinsEpitopeTool (1 tools)#

Local Tools:

EBIProteins_get_epitopes (from Ebi Proteins Epitope Tools)

EBIProteinsExtTool (11 tools)#

Local Tools:

EBIProteins_get_antigen (from Ebi Proteins Ext Tools)
EBIProteins_get_coordinates (from Ebi Proteins Ext Tools)
EBIProteins_get_features (from Ebi Proteins Ext Tools)
EBIProteins_get_hpp_peptides (from Ebi Proteins Ext Tools)
EBIProteins_get_mutagenesis (from Ebi Proteins Ext Tools)
EBIProteins_get_proteomics_peptides (from Ebi Proteins Ext Tools)
EBIProteins_get_proteomics_ptm (from Ebi Proteins Ext Tools)
EBIProteins_get_rna_editing (from Ebi Proteins Ext Tools)
EBIProteins_get_variation (from Ebi Proteins Ext Tools)
EBIProteins_get_variation_by_dbsnp (from Ebi Proteins Ext Tools)
EBIProteins_get_variation_by_hgvs (from Ebi Proteins Ext Tools)

EBIProteinsFeaturesTool (3 tools)#

Local Tools:

EBIProteins_get_domains_sites (from Ebi Proteins Features Tools)
EBIProteins_get_molecule_processing (from Ebi Proteins Features Tools)
EBIProteins_get_structural_features (from Ebi Proteins Features Tools)

EBIProteinsInteractionsTool (2 tools)#

Local Tools:

EBIProteins_get_interaction_details (from Ebi Proteins Interactions Tools)
EBIProteins_get_interactions (from Ebi Proteins Interactions Tools)

EBISearchRESTTool (7 tools)#

Local Tools:

ebi_cross_reference_search (from Ebi Search Tools)
ebi_get_domain_fields (from Ebi Search Tools)
ebi_get_domain_info (from Ebi Search Tools)
ebi_get_entry (from Ebi Search Tools)
ebi_list_domains (from Ebi Search Tools)
ebi_search_domain (from Ebi Search Tools)
ebi_search_with_facets (from Ebi Search Tools)

EBITaxonomyTool (4 tools)#

Local Tools:

EBITaxonomy_get_by_id (from Ebi Taxonomy Tools)
EBITaxonomy_get_by_scientific_name (from Ebi Taxonomy Tools)
EBITaxonomy_search_by_name (from Ebi Taxonomy Tools)
EBITaxonomy_suggest (from Ebi Taxonomy Tools)

EFOTool (1 tools)#

Local Tools:

OSL_get_efo_id_by_disease_name (from Efo Tools)

ELMTool (3 tools)#

Local Tools:

ELM_get_instances (from Elm Tools)
ELM_get_interaction_domains (from Elm Tools)
ELM_list_classes (from Elm Tools)

EMDBRESTTool (7 tools)#

Local Tools:

EMDB_get_imaging_info (from Emdb Tools)
EMDB_get_map_info (from Emdb Tools)
EMDB_get_publications (from Emdb Tools)
EMDB_get_sample_info (from Emdb Tools)
EMDB_get_structure (from Emdb Tools)
EMDB_get_validation (from Emdb Tools)
EMDB_search_structures (from Emdb Tools)

EMPIARTool (2 tools)#

Local Tools:

EMPIAR_get_entry (from Empiar Tools)
EMPIAR_search_entries (from Empiar Tools)

EMoleculesTool (4 tools)#

Local Tools:

eMolecules_get_compound (from Emolecules Tools)
eMolecules_get_vendors (from Emolecules Tools)
eMolecules_search (from Emolecules Tools)
eMolecules_search_smiles (from Emolecules Tools)

ENABrowserRESTTool (6 tools)#

Local Tools:

ena_get_entry (from Ena Browser Tools)
ena_get_entry_history (from Ena Browser Tools)
ena_get_entry_summary (from Ena Browser Tools)
ena_get_sequence_embl (from Ena Browser Tools)
ena_get_sequence_fasta (from Ena Browser Tools)
ena_get_sequence_xml (from Ena Browser Tools)

ENAPortalTool (4 tools)#

Local Tools:

ENAPortal_count_records (from Ena Portal Tools)
ENAPortal_search_runs_fastq (from Ena Portal Tools)
ENAPortal_search_samples (from Ena Portal Tools)
ENAPortal_search_studies (from Ena Portal Tools)

ENCODEFilesTool (1 tools)#

Local Tools:

ENCODE_list_files (from Encode Tools)

ENCODERESTTool (3 tools)#

Local Tools:

ENCODE_get_biosample (from Encode Tools)
ENCODE_get_experiment (from Encode Tools)
ENCODE_get_file (from Encode Tools)

ENCODESearchBiosamplesTool (1 tools)#

Local Tools:

ENCODE_search_biosamples (from Encode Tools)

ENCODESearchTool (1 tools)#

Local Tools:

ENCODE_search_experiments (from Encode Tools)

ENCORITool (7 tools)#

Local Tools:

ENCORI_get_RBP_disease (from Encori Tools)
ENCORI_get_RBP_targets (from Encori Tools)
ENCORI_get_RNA_RNA_interactions (from Encori Tools)
ENCORI_get_ceRNA_network (from Encori Tools)
ENCORI_get_degradome_cleavage (from Encori Tools)
ENCORI_get_miRNA_targets (from Encori Tools)
ENCORI_scan_RBP_motifs (from Encori Tools)

EOLTool (4 tools)#

Local Tools:

EOL_get_collection (from Eol Tools)
EOL_get_hierarchy_entry (from Eol Tools)
EOL_get_page (from Eol Tools)
EOL_search_species (from Eol Tools)

EPAFRSFacilitiesTool (1 tools)#

Local Tools:

EPA_search_frs_facilities (from Epa Envirofacts Tools)

EPATRIFacilitiesTool (2 tools)#

Local Tools:

EPA_get_tri_facility_chemical_releases (from Epa Envirofacts Tools)
EPA_search_tri_facilities (from Epa Envirofacts Tools)

EPMCAnnotationsTool (5 tools)#

Local Tools:

EPMC_get_article_chemicals (from Epmc Annotations Tools)
EPMC_get_article_diseases (from Epmc Annotations Tools)
EPMC_get_article_genes (from Epmc Annotations Tools)
EPMC_get_article_organisms (from Epmc Annotations Tools)
EPMC_get_text_mined_annotations (from Epmc Annotations Tools)

ESM2VariantEffectTool (1 tools)#

Local Tools:

ESM2_score_missense_variant (from Esm2 Variant Effect Tools)

ESMFoldTool (1 tools)#

Local Tools:

ESMFold_predict_structure (from Esmfold Tools)

ESMTool (10 tools)#

Local Tools:

ESM_describe_sae_feature (from Esm Tools)
ESM_explain_variant_mechanism (from Esm Tools)
ESM_fold_protein (from Esm Tools)
ESM_generate_protein_sequence (from Esm Tools)
ESM_get_protein_embedding (from Esm Tools)
ESM_get_region_sae_features (from Esm Tools)
ESM_get_sae_features (from Esm Tools)
ESM_score_sequence (from Esm Tools)
ESM_score_variant_sae_batch (from Esm Tools)
ESM_score_variant_sae_disruption (from Esm Tools)

EVETool (2 tools)#

Local Tools:

EVE_get_gene_info (from Eve Tools)
EVE_get_variant_score (from Eve Tools)

EdgeRLimmaTool (1 tools)#

Local Tools:

RNAseq_edger_limma_de (from Edger Limma Tools)

EmbeddingDatabase (3 tools)#

Local Tools:

embedding_database_add (from Embedding Tools)
embedding_database_create (from Embedding Tools)
embedding_database_search (from Embedding Tools)

EmbeddingSync (2 tools)#

Local Tools:

embedding_sync_download (from Embedding Tools)
embedding_sync_upload (from Embedding Tools)

EnamineTool (4 tools)#

Local Tools:

Enamine_get_compound (from Enamine Tools)
Enamine_get_libraries (from Enamine Tools)
Enamine_search_catalog (from Enamine Tools)
Enamine_search_smiles (from Enamine Tools)

EnrichrExtTool (4 tools)#

Local Tools:

Enrichr_enrich (from Enrichr Ext Tools)
Enrichr_gene_to_genesets (from Enrichr Ext Tools)
Enrichr_get_top_enriched (from Enrichr Ext Tools)
Enrichr_list_libraries (from Enrichr Ext Tools)

EnrichrTool (1 tools)#

Local Tools:

enrichr_gene_enrichment_analysis (from Enrichr Tools)

EnsemblArchiveTool (2 tools)#

Local Tools:

EnsemblArchive_batch_lookup (from Ensembl Archive Tools)
EnsemblArchive_get_id_history (from Ensembl Archive Tools)

EnsemblComparaTool (4 tools)#

Local Tools:

EnsemblCompara_get_cafe_tree (from Ensembl Compara Tools)
EnsemblCompara_get_gene_tree (from Ensembl Compara Tools)
EnsemblCompara_get_orthologues (from Ensembl Compara Tools)
EnsemblCompara_get_paralogues (from Ensembl Compara Tools)

EnsemblInfoTool (2 tools)#

Local Tools:

Ensembl_get_assembly_info (from Ensembl Info Tools)
Ensembl_get_species_info (from Ensembl Info Tools)

EnsemblLDTool (3 tools)#

Local Tools:

EnsemblLD_get_ld_pairwise (from Ensembl Ld Tools)
EnsemblLD_get_ld_region (from Ensembl Ld Tools)
EnsemblLD_get_ld_variants (from Ensembl Ld Tools)

EnsemblMapTool (2 tools)#

Local Tools:

EnsemblMap_convert_coordinates (from Ensembl Map Tools)
EnsemblMap_translate_coordinates (from Ensembl Map Tools)

EnsemblOverlapTool (2 tools)#

Local Tools:

Ensembl_get_gene_overlapping_features (from Ensembl Overlap Tools)
Ensembl_get_region_features (from Ensembl Overlap Tools)

EnsemblPhenotypeTool (4 tools)#

Local Tools:

EnsemblPheno_get_by_gene (from Ensembl Phenotype Tools)
EnsemblPheno_get_by_region (from Ensembl Phenotype Tools)
EnsemblPheno_get_by_term (from Ensembl Phenotype Tools)
EnsemblPheno_get_by_variant (from Ensembl Phenotype Tools)

EnsemblRESTTool (22 tools)#

Local Tools:

Ensembl_get_transcript_haplotypes (from Ensembl Tools)
ensembl_get_alignment (from Ensembl Tools)
ensembl_get_archive (from Ensembl Tools)
ensembl_get_genetree (from Ensembl Tools)
ensembl_get_homology (from Ensembl Tools)
ensembl_get_ontology_ancestors (from Ensembl Tools)
ensembl_get_ontology_descendants (from Ensembl Tools)
ensembl_get_ontology_term (from Ensembl Tools)
ensembl_get_overlap_features (from Ensembl Tools)
ensembl_get_regulatory_features (from Ensembl Tools)
ensembl_get_sequence (from Ensembl Tools)
ensembl_get_species (from Ensembl Tools)
ensembl_get_structural_variants (from Ensembl Tools)
ensembl_get_sv_detail (from Ensembl Tools)
ensembl_get_taxonomy (from Ensembl Tools)
ensembl_get_variants (from Ensembl Tools)
ensembl_get_variation (from Ensembl Tools)
ensembl_get_variation_phenotypes (from Ensembl Tools)
ensembl_get_xrefs (from Ensembl Tools)
ensembl_get_xrefs_by_name (from Ensembl Tools)
ensembl_lookup_gene (from Ensembl Tools)
ensembl_vep_region (from Ensembl Tools)

EnsemblRegulationTool (3 tools)#

Local Tools:

EnsemblReg_get_binding_matrix (from Ensembl Regulation Tools)
EnsemblReg_get_constrained_elements (from Ensembl Regulation Tools)
EnsemblReg_get_motif_features (from Ensembl Regulation Tools)

EnsemblSequenceTool (2 tools)#

Local Tools:

EnsemblSeq_get_id_sequence (from Ensembl Sequence Tools)
EnsemblSeq_get_region_sequence (from Ensembl Sequence Tools)

EnsemblVEPTool (3 tools)#

Local Tools:

EnsemblVEP_annotate_hgvs (from Ensembl Vep Tools)
EnsemblVEP_annotate_rsid (from Ensembl Vep Tools)
EnsemblVEP_variant_recoder (from Ensembl Vep Tools)

EnsemblVariationExtTool (2 tools)#

Local Tools:

EnsemblVar_get_population_frequencies (from Ensembl Variation Ext Tools)
EnsemblVar_get_variant_consequences (from Ensembl Variation Ext Tools)

EnsemblXrefsTool (2 tools)#

Local Tools:

Ensembl_get_cross_references (from Ensembl Xrefs Tools)
Ensembl_lookup_gene_by_symbol (from Ensembl Xrefs Tools)

EpiGraphDBTool (8 tools)#

Local Tools:

EpiGraphDB_get_drugs_for_trait (from Epigraphdb Tools)
EpiGraphDB_get_gene_drug_associations (from Epigraphdb Tools)
EpiGraphDB_get_genetic_correlations (from Epigraphdb Tools)
EpiGraphDB_get_literature_evidence (from Epigraphdb Tools)
EpiGraphDB_get_mendelian_randomization (from Epigraphdb Tools)
EpiGraphDB_map_gwas_to_efo (from Epigraphdb Tools)
EpiGraphDB_search_gene (from Epigraphdb Tools)
EpiGraphDB_search_opengwas (from Epigraphdb Tools)

EpidemiologyTool (5 tools)#

Local Tools:

Epidemiology_bayesian (from Epidemiology Tools)
Epidemiology_diagnostic (from Epidemiology Tools)
Epidemiology_nnt (from Epidemiology Tools)
Epidemiology_r0_herd (from Epidemiology Tools)
Epidemiology_vaccine_coverage (from Epidemiology Tools)

EpigenomicsTool (14 tools)#

Local Tools:

ENCODE_get_chromatin_state (from Epigenomics Tools)
ENCODE_search_annotations (from Epigenomics Tools)
ENCODE_search_chromatin_accessibility (from Epigenomics Tools)
ENCODE_search_hic_experiments (from Epigenomics Tools)
ENCODE_search_histone_experiments (from Epigenomics Tools)
ENCODE_search_methylation_experiments (from Epigenomics Tools)
ENCODE_search_microrna_experiments (from Epigenomics Tools)
ENCODE_search_rnaseq_experiments (from Epigenomics Tools)
EnsemblReg_get_regulatory_elements (from Epigenomics Tools)
GEO_get_dataset_details (from Epigenomics Tools)
GEO_search_atacseq_datasets (from Epigenomics Tools)
GEO_search_chipseq_datasets (from Epigenomics Tools)
GEO_search_methylation_datasets (from Epigenomics Tools)
GEO_search_rnaseq_datasets (from Epigenomics Tools)

EuHealthDeepDiveTool (1 tools)#

Local Tools:

euhealthinfo_deepdive (from Euhealth Tools)

EuHealthTopicSearchTool (20 tools)#

Local Tools:

euhealthinfo_search_alcohol_tobacco_psychoactive_use (from Euhealth Tools)
euhealthinfo_search_births (from Euhealth Tools)
euhealthinfo_search_cancer (from Euhealth Tools)
euhealthinfo_search_cancer_registry (from Euhealth Tools)
euhealthinfo_search_causes_of_death (from Euhealth Tools)
euhealthinfo_search_covid_19 (from Euhealth Tools)
euhealthinfo_search_deaths (from Euhealth Tools)
euhealthinfo_search_diabetes_epidemiology_registry (from Euhealth Tools)
euhealthinfo_search_disability (from Euhealth Tools)
euhealthinfo_search_healthcare_expenditure (from Euhealth Tools)
euhealthinfo_search_hospital_in_patient_data (from Euhealth Tools)
euhealthinfo_search_infectious_diseases (from Euhealth Tools)
euhealthinfo_search_key_indicators_registries_surveys (from Euhealth Tools)
euhealthinfo_search_mental_health (from Euhealth Tools)
euhealthinfo_search_obesity (from Euhealth Tools)
euhealthinfo_search_population_health_survey (from Euhealth Tools)
euhealthinfo_search_primary_care_workforce (from Euhealth Tools)
euhealthinfo_search_surveillance (from Euhealth Tools)
euhealthinfo_search_surveillance_mortality_rates (from Euhealth Tools)
euhealthinfo_search_vaccination (from Euhealth Tools)

EuroPMCAnnotationsTool (3 tools)#

Local Tools:

EuroPMCAnnot_get_annotations_by_type (from Europepmc Annotations Tools)
EuroPMCAnnot_get_article_annotations (from Europepmc Annotations Tools)
EuroPMCAnnot_get_chemicals_from_article (from Europepmc Annotations Tools)

EuropePMCFullTextFetchTool (1 tools)#

Local Tools:

EuropePMC_get_fulltext (from Europe Pmc Tools)

EuropePMCFullTextSnippetsTool (1 tools)#

Local Tools:

EuropePMC_get_fulltext_snippets (from Europe Pmc Tools)

EuropePMCGuidelinesTool (1 tools)#

Local Tools:

EuropePMC_Guidelines_Search (from Unified Guideline Tools)

EuropePMCRESTTool (2 tools)#

Local Tools:

EuropePMC_get_citations (from Europe Pmc Tools)
EuropePMC_get_references (from Europe Pmc Tools)

EuropePMCStructuredFullTextTool (1 tools)#

Local Tools:

EuropePMC_get_full_text (from Europe Pmc Tools)

EuropePMCTool (1 tools)#

Local Tools:

EuropePMC_search_articles (from Europe Pmc Tools)

Evo2VariantEffectTool (1 tools)#

Local Tools:

Evo2_score_variant (from Evo2 Variant Effect Tools)

ExecuteTool (1 tools)#

Local Tools:

execute_tool (from Compact Mode Tools)

ExecutedNotebookTool (1 tools)#

Local Tools:

read_executed_notebook (from Executed Notebook Tools)

ExpressionANOVAPerGeneTool (1 tools)#

Local Tools:

expression_anova_per_gene (from Expression Anova Tools)

ExpressionAtlasTool (4 tools)#

Local Tools:

ExpressionAtlas_get_baseline (from Expression Atlas Tools)
ExpressionAtlas_get_experiment (from Expression Atlas Tools)
ExpressionAtlas_search_differential (from Expression Atlas Tools)
ExpressionAtlas_search_experiments (from Expression Atlas Tools)

FAERSAnalyticsTool (6 tools)#

Local Tools:

FAERS_analyze_temporal_trends (from Faers Analytics Tools)
FAERS_calculate_disproportionality (from Faers Analytics Tools)
FAERS_compare_drugs (from Faers Analytics Tools)
FAERS_filter_serious_events (from Faers Analytics Tools)
FAERS_rollup_meddra_hierarchy (from Faers Analytics Tools)
FAERS_stratify_by_demographics (from Faers Analytics Tools)

FAVORVariantAnnotationTool (1 tools)#

Local Tools:

FAVOR_annotate_variant (from Favor Tools)

FDACountAdditiveReactionsTool (6 tools)#

Local Tools:

FAERS_count_additive_administration_routes (from Fda Drug Adverse Event Tools)
FAERS_count_additive_adverse_reactions (from Fda Drug Adverse Event Tools)
FAERS_count_additive_event_reports_by_country (from Fda Drug Adverse Event Tools)
FAERS_count_additive_reaction_outcomes (from Fda Drug Adverse Event Tools)
FAERS_count_additive_reports_by_reporter_country (from Fda Drug Adverse Event Tools)
FAERS_count_additive_seriousness_classification (from Fda Drug Adverse Event Tools)

FDADrugAdverseEventDetailTool (5 tools)#

Local Tools:

FAERS_search_adverse_event_reports (from Fda Drug Adverse Event Detail Tools)
FAERS_search_reports_by_drug_and_indication (from Fda Drug Adverse Event Detail Tools)
FAERS_search_reports_by_drug_and_outcome (from Fda Drug Adverse Event Detail Tools)
FAERS_search_reports_by_drug_and_reaction (from Fda Drug Adverse Event Detail Tools)
FAERS_search_serious_reports_by_drug (from Fda Drug Adverse Event Detail Tools)

FDADrugAdverseEventTool (12 tools)#

Local Tools:

FAERS_count_country_by_drug_event (from Fda Drug Adverse Event Tools)
FAERS_count_death_related_by_drug (from Fda Drug Adverse Event Tools)
FAERS_count_drug_characterization (from Fda Drug Adverse Event Tools)
FAERS_count_drug_routes_by_event (from Fda Drug Adverse Event Tools)
FAERS_count_drugs_by_drug_event (from Fda Drug Adverse Event Tools)
FAERS_count_indications_by_drug (from Fda Drug Adverse Event Tools)
FAERS_count_outcomes_by_drug_event (from Fda Drug Adverse Event Tools)
FAERS_count_patient_age_distribution (from Fda Drug Adverse Event Tools)
FAERS_count_reactions_by_drug_event (from Fda Drug Adverse Event Tools)
FAERS_count_reporter_qualification (from Fda Drug Adverse Event Tools)
FAERS_count_reportercountry_by_drug_event (from Fda Drug Adverse Event Tools)
FAERS_count_seriousness_by_drug_event (from Fda Drug Adverse Event Tools)

FDADrugInteractionDetailTool (1 tools)#

Local Tools:

FAERS_search_reports_by_drug_combination (from Fda Drug Adverse Event Detail Tools)

FDADrugLabel (152 tools)#

Local Tools:

FDA_get_DEA_schedule_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_abuse_dependence_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_abuse_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_accessories_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_active_ingredient_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_adverse_reactions_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_alarms_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_animal_pharmacology_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_assembly_installation_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_boxed_warning_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_brand_name_generic_name (from Fda Drug Labeling Tools)
FDA_get_carcinogenic_mutagenic_fertility_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_child_safety_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_clinical_pharmacology_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_clinical_studies_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_conditions_info_for_doctor_consult_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_consulting_doctor_pharmacist_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_contact_for_questions_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_contraindications_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_dependence_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_dhcp_letter_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_disposal_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_do_not_use_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_document_id_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_dosage_and_storage_information_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_dosage_forms_and_strengths_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_drug_interactions_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_drug_name_by_SPL_ID (from Fda Drug Labeling Tools)
FDA_get_drug_name_by_adverse_reaction (from Fda Drug Labeling Tools)
FDA_get_drug_name_by_conditions_for_doctor_consult (from Fda Drug Labeling Tools)
FDA_get_drug_name_by_dependence_info (from Fda Drug Labeling Tools)
FDA_get_drug_name_by_document_id (from Fda Drug Labeling Tools)
FDA_get_drug_name_by_dosage_info (from Fda Drug Labeling Tools)
FDA_get_drug_name_by_environmental_warning (from Fda Drug Labeling Tools)
FDA_get_drug_name_by_inactive_ingredient (from Fda Drug Labeling Tools)
FDA_get_drug_name_by_labor_and_delivery_info (from Fda Drug Labeling Tools)
FDA_get_drug_name_by_microbiology (from Fda Drug Labeling Tools)
FDA_get_drug_name_by_other_safety_info (from Fda Drug Labeling Tools)
FDA_get_drug_name_by_pharmacodynamics (from Fda Drug Labeling Tools)
FDA_get_drug_name_by_pharmacogenomics (from Fda Drug Labeling Tools)
FDA_get_drug_name_by_precautions (from Fda Drug Labeling Tools)
FDA_get_drug_name_by_pregnancy_or_breastfeeding_info (from Fda Drug Labeling Tools)
FDA_get_drug_name_by_principal_display_panel (from Fda Drug Labeling Tools)
FDA_get_drug_name_by_reference (from Fda Drug Labeling Tools)
FDA_get_drug_name_by_set_id (from Fda Drug Labeling Tools)
FDA_get_drug_name_by_stop_use_info (from Fda Drug Labeling Tools)
FDA_get_drug_name_by_storage_and_handling_info (from Fda Drug Labeling Tools)
FDA_get_drug_name_by_warnings (from Fda Drug Labeling Tools)
FDA_get_drug_name_from_patient_package_insert (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_abuse_dependence_info (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_abuse_info (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_accessories (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_active_ingredient (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_alarm (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_animal_pharmacology_info (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_application_number_NDC_number (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_assembly_installation_info (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_boxed_warning (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_child_safety_info (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_clinical_pharmacology (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_clinical_studies (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_consulting_doctor_pharmacist_info (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_contraindications (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_controlled_substance_DEA_schedule (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_dhcp_letter_info (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_disposal_info (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_dosage_forms_and_strengths_info (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_drug_interactions (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_effective_time (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_food_safety_warnings (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_general_precautions (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_geriatric_use (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_health_claim (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_indication (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_info_for_nursing_mothers (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_info_for_owner_or_caregiver (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_ingredient (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_instructions_for_use (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_lab_test_interference (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_lab_tests (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_mechanism_of_action (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_medication_guide (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_nonclinical_toxicology_info (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_nonteratogenic_effects (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_overdosage_info (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_pediatric_use (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_pharmacokinetics (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_population_use (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_pregnancy_effects_info (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_residue_warning (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_risk (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_route (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_safe_handling_warning (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_safety_summary (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_spl_indexing_data_elements (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_teratogenic_effects (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_user_safety_warning (from Fda Drug Labeling Tools)
FDA_get_drug_names_by_warnings_and_cautions (from Fda Drug Labeling Tools)
FDA_get_drugs_by_carcinogenic_mutagenic_fertility (from Fda Drug Labeling Tools)
FDA_get_effective_time_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_environmental_warning_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_general_precautions_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_geriatric_use_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_health_claims_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_inactive_ingredient_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_indications_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_info_for_nursing_mothers_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_info_for_owner_caregiver_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_info_for_patients_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_ingredients_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_instructions_for_use_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_lab_test_interference_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_lab_tests_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_labor_and_delivery_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_manufacturer_name_NDC_number_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_mechanism_of_action_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_medication_guide_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_microbiology_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_nonclinical_toxicology_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_nonteratogenic_effects_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_other_safety_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_overdosage_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_patient_package_insert_from_drug_name (from Fda Drug Labeling Tools)
FDA_get_pediatric_use_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_pharmacodynamics_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_pharmacogenomics_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_pharmacokinetics_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_population_use_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_precautions_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_pregnancy_effects_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_pregnancy_or_breastfeeding_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_principal_display_panel_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_purpose_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_recent_changes_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_reference_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_risk_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_route_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_safe_handling_warnings_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_safety_summary_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_spl_indexing_data_elements_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_spl_unclassified_section_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_stop_use_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_storage_and_handling_info_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_teratogenic_effects_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_user_safety_warning_by_drug_names (from Fda Drug Labeling Tools)
FDA_get_warnings_and_cautions_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_warnings_by_drug_name (from Fda Drug Labeling Tools)
FDA_get_when_using_info (from Fda Drug Labeling Tools)
FDA_retrieve_device_use_by_drug_name (from Fda Drug Labeling Tools)
FDA_retrieve_drug_name_by_device_use (from Fda Drug Labeling Tools)
FDA_retrieve_drug_names_by_patient_medication_info (from Fda Drug Labeling Tools)
FDA_retrieve_patient_medication_info_by_drug_name (from Fda Drug Labeling Tools)

FDADrugLabelAggregated (1 tools)#

Local Tools:

FDA_get_drug_names_by_indication_aggregated (from Fda Drug Labeling Tools)

FDADrugLabelFieldValueTool (1 tools)#

Local Tools:

FDA_get_drug_label_info_by_field_value (from Fda Drug Labeling Tools)

FDADrugLabelGetDrugGenericNameTool (1 tools)#

Local Tools:

FDA_get_drug_generic_name (from Fda Drug Labeling Tools)

FDADrugLabelStats (1 tools)#

Local Tools:

FDA_get_drug_names_by_indication_stats (from Fda Drug Labeling Tools)

FDAGSRSTool (4 tools)#

Local Tools:

FDAGSRS_get_structure (from Fda Gsrs Tools)
FDAGSRS_get_substance (from Fda Gsrs Tools)
FDAGSRS_get_substance_relationships (from Fda Gsrs Tools)
FDAGSRS_search_substances (from Fda Gsrs Tools)

FDALabelTool (3 tools)#

Local Tools:

FDA_get_drug_label (from Openfda Label Tools)
FDA_list_drug_classes (from Openfda Label Tools)
FDA_search_drug_labels (from Openfda Label Tools)

FDAOrangeBookTool (6 tools)#

Local Tools:

FDA_OrangeBook_check_generic_availability (from Fda Orange Book Tools)
FDA_OrangeBook_get_approval_history (from Fda Orange Book Tools)
FDA_OrangeBook_get_exclusivity (from Fda Orange Book Tools)
FDA_OrangeBook_get_patent_info (from Fda Orange Book Tools)
FDA_OrangeBook_get_te_code (from Fda Orange Book Tools)
FDA_OrangeBook_search_drug (from Fda Orange Book Tools)

FDAPharmacogenomicBiomarkersTool (1 tools)#

Local Tools:

fda_pharmacogenomic_biomarkers (from Fda Pharmacogenomic Biomarkers Tools)

FatcatScholarTool (1 tools)#

Local Tools:

Fatcat_search_scholar (from Fatcat Tools)

FileDownloadTool (1 tools)#

Local Tools:

download_file (from File Download Tools)

FinemapABFTool (1 tools)#

Local Tools:

Finemap_credible_set (from Finemap Abf Tools)

FinnGenTool (4 tools)#

Local Tools:

FinnGen_get_phenotype (from Finngen Tools)
FinnGen_get_region_associations (from Finngen Tools)
FinnGen_get_variant_finemapping (from Finngen Tools)
FinnGen_list_phenotypes (from Finngen Tools)

FoldseekTool (2 tools)#

Local Tools:

Foldseek_get_result (from Foldseek Tools)
Foldseek_search_structure (from Foldseek Tools)

FooDBCompoundTool (1 tools)#

Local Tools:

FooDB_get_compound (from Foodb Tools)

FoodDataCentralTool (2 tools)#

Local Tools:

FoodDataCentral_get_food (from Fooddata Central Tools)
FoodDataCentral_search_foods (from Fooddata Central Tools)

FourDNTool (4 tools)#

Local Tools:

FourDN_get_download_url (from Fourdn Tools)
FourDN_get_experiment_metadata (from Fourdn Tools)
FourDN_get_file_metadata (from Fourdn Tools)
FourDN_search_data (from Fourdn Tools)

GBIFOccurrenceTool (1 tools)#

Local Tools:

GBIF_search_occurrences (from Gbif Tools)

GBIFTaxonomyTool (5 tools)#

Local Tools:

GBIF_get_taxon_children (from Gbif Taxonomy Tools)
GBIF_get_taxon_parents (from Gbif Taxonomy Tools)
GBIF_get_taxon_synonyms (from Gbif Taxonomy Tools)
GBIF_get_vernacular_names (from Gbif Taxonomy Tools)
GBIF_parse_name (from Gbif Taxonomy Tools)

GBIFTool (1 tools)#

Local Tools:

GBIF_search_species (from Gbif Tools)

GDCCNVTool (1 tools)#

Local Tools:

GDC_get_cnv_data (from Gdc Tools)

GDCCasesTool (1 tools)#

Local Tools:

GDC_search_cases (from Gdc Tools)

GDCClinicalDataTool (1 tools)#

Local Tools:

GDC_get_clinical_data (from Gdc Tools)

GDCFilesTool (1 tools)#

Local Tools:

GDC_list_files (from Gdc Tools)

GDCGeneExpressionTool (1 tools)#

Local Tools:

GDC_get_gene_expression (from Gdc Tools)

GDCMutationFreqByProjectTool (1 tools)#

Local Tools:

GDC_get_mutation_frequency_by_project (from Gdc Tools)

GDCMutationFrequencyTool (1 tools)#

Local Tools:

GDC_get_mutation_frequency (from Gdc Tools)

GDCProjectsTool (1 tools)#

Local Tools:

GDC_list_projects (from Gdc Tools)

GDCSSMTool (1 tools)#

Local Tools:

GDC_get_ssm_by_gene (from Gdc Tools)

GDCSurvivalTool (1 tools)#

Local Tools:

GDC_get_survival (from Gdc Tools)

GEOGetDatasetInfo (1 tools)#

Local Tools:

geo_get_dataset_info (from Geo Tools)

GEOGetSampleInfo (1 tools)#

Local Tools:

geo_get_sample_info (from Geo Tools)

GEORESTTool (1 tools)#

Local Tools:

geo_list_supplementary_files (from Geo Tools)

GEOSearchDatasets (1 tools)#

Local Tools:

geo_search_datasets (from Geo Tools)

GINGuidelinesTool (1 tools)#

Local Tools:

GIN_Guidelines_Search (from Unified Guideline Tools)

GNPSTool (4 tools)#

Local Tools:

GNPS_compare_spectra (from Gnps Tools)
GNPS_get_library_record (from Gnps Tools)
GNPS_get_spectrum (from Gnps Tools)
GNPS_npclassifier_from_smiles (from Gnps Tools)

GOAPITool (3 tools)#

Local Tools:

GOAPI_get_gene_functions (from Go Api Tools)
GOAPI_get_genes_by_function (from Go Api Tools)
GOAPI_get_term (from Go Api Tools)

GPCRdbTool (5 tools)#

Local Tools:

GPCRdb_get_ligands (from Gpcrdb Tools)
GPCRdb_get_mutations (from Gpcrdb Tools)
GPCRdb_get_protein (from Gpcrdb Tools)
GPCRdb_get_structures (from Gpcrdb Tools)
GPCRdb_list_proteins (from Gpcrdb Tools)

GProfilerTool (4 tools)#

Local Tools:

gProfiler_annotate_snps (from Gprofiler Tools)
gProfiler_convert_ids (from Gprofiler Tools)
gProfiler_enrichment (from Gprofiler Tools)
gProfiler_find_orthologs (from Gprofiler Tools)

GSEAPrerankTool (1 tools)#

Local Tools:

GSEA_prerank (from Gsea Prerank Tools)

GSVATool (1 tools)#

Local Tools:

GSVA_score (from Gsva Tools)

GTDBTool (5 tools)#

Local Tools:

GTDB_get_genome (from Gtdb Tools)
GTDB_get_species (from Gtdb Tools)
GTDB_get_taxon_info (from Gtdb Tools)
GTDB_search_genomes (from Gtdb Tools)
GTDB_search_taxon (from Gtdb Tools)

GTExEQTLTool (1 tools)#

Local Tools:

GTEx_query_eqtl (from Gtex Tools)

GTExExpressionTool (1 tools)#

Local Tools:

GTEx_get_expression_summary (from Gtex Tools)

GTExV2Tool (14 tools)#

Local Tools:

GTEx_calculate_eqtl (from Gtex V2 Tools)
GTEx_get_dataset_info (from Gtex V2 Tools)
GTEx_get_eqtl_genes (from Gtex V2 Tools)
GTEx_get_finemapping_and_independent_eqtl (from Gtex V2 Tools)
GTEx_get_gene_expression (from Gtex V2 Tools)
GTEx_get_median_gene_expression (from Gtex V2 Tools)
GTEx_get_median_transcript_expression (from Gtex V2 Tools)
GTEx_get_multi_tissue_eqtls (from Gtex V2 Tools)
GTEx_get_sample_info (from Gtex V2 Tools)
GTEx_get_single_nucleus_expression (from Gtex V2 Tools)
GTEx_get_single_tissue_eqtls (from Gtex V2 Tools)
GTEx_get_single_tissue_sqtls (from Gtex V2 Tools)
GTEx_get_tissue_sites (from Gtex V2 Tools)
GTEx_get_top_expressed_genes (from Gtex V2 Tools)

GWASAssociationByID (1 tools)#

Local Tools:

gwas_get_association_by_id (from Gwas Tools)

GWASAssociationSearch (1 tools)#

Local Tools:

gwas_search_associations (from Gwas Tools)

GWASAssociationsForSNP (1 tools)#

Local Tools:

gwas_get_associations_for_snp (from Gwas Tools)

GWASAssociationsForStudy (1 tools)#

Local Tools:

gwas_get_associations_for_study (from Gwas Tools)

GWASAssociationsForTrait (1 tools)#

Local Tools:

gwas_get_associations_for_trait (from Gwas Tools)

GWASGeneSearch (1 tools)#

Local Tools:

GWAS_search_associations_by_gene (from Gwas Tools)

GWASSNPByID (1 tools)#

Local Tools:

gwas_get_snp_by_id (from Gwas Tools)

GWASSNPSearch (1 tools)#

Local Tools:

gwas_search_snps (from Gwas Tools)

GWASSNPsForGene (1 tools)#

Local Tools:

gwas_get_snps_for_gene (from Gwas Tools)

GWASStudiesForTrait (1 tools)#

Local Tools:

gwas_get_studies_for_trait (from Gwas Tools)

GWASStudyByID (1 tools)#

Local Tools:

gwas_get_study_by_id (from Gwas Tools)

GWASStudySearch (1 tools)#

Local Tools:

gwas_search_studies (from Gwas Tools)

GWASSumStatsTool (3 tools)#

Local Tools:

GWASSumStats_get_region_associations (from Gwas Sumstats Tools)
GWASSumStats_get_trait_studies (from Gwas Sumstats Tools)
GWASSumStats_list_studies (from Gwas Sumstats Tools)

GWASVariantsForTrait (1 tools)#

Local Tools:

gwas_get_variants_for_trait (from Gwas Tools)

GenCCTool (3 tools)#

Local Tools:

GenCC_get_classifications (from Gencc Tools)
GenCC_search_disease (from Gencc Tools)
GenCC_search_gene (from Gencc Tools)

GeneBeTool (2 tools)#

Local Tools:

GeneBe_classify_variant (from Genebe Tools)
GeneBe_classify_variants_batch (from Genebe Tools)

GeneOntologyTool (5 tools)#

Local Tools:

GO_get_annotations_for_gene (from Gene Ontology Tools)
GO_get_genes_for_term (from Gene Ontology Tools)
GO_get_term_by_id (from Gene Ontology Tools)
GO_get_term_details (from Gene Ontology Tools)
GO_search_terms (from Gene Ontology Tools)

GenebassTool (1 tools)#

Local Tools:

Genebass_gene_burden_phewas (from Pheweb Phewas Tools)

GenomeNexusTool (5 tools)#

Local Tools:

GenomeNexus_annotate_dbsnp (from Genome Nexus Tools)
GenomeNexus_annotate_mutation (from Genome Nexus Tools)
GenomeNexus_annotate_variant (from Genome Nexus Tools)
GenomeNexus_get_cancer_hotspots (from Genome Nexus Tools)
GenomeNexus_get_canonical_transcript (from Genome Nexus Tools)

GetSPLBySetIDTool (3 tools)#

Local Tools:

DailyMed_get_spl_by_setid (from Dailymed Tools)
DailyMed_get_spl_history (from Dailymed Tools)
DailyMed_get_spl_media (from Dailymed Tools)

GetToolInfo (1 tools)#

Local Tools:

get_tool_info (from Compact Mode Tools)

GlyGenTool (5 tools)#

Local Tools:

GlyGen_get_glycan (from Glygen Tools)
GlyGen_get_glycoprotein (from Glygen Tools)
GlyGen_get_site (from Glygen Tools)
GlyGen_search_glycans (from Glygen Tools)
GlyGen_search_glycoproteins (from Glygen Tools)

GmrepoTool (2 tools)#

Local Tools:

GMrepo_get_phenotypes (from Gmrepo Tools)
GMrepo_search_species (from Gmrepo Tools)

GnomADConstraintTool (1 tools)#

Local Tools:

gnomad_get_constraint (from Gnomad Constraint Tools)

GrepTools (1 tools)#

Local Tools:

grep_tools (from Compact Mode Tools)

GtoPdbRESTTool (6 tools)#

Local Tools:

GtoPdb_get_disease_associations (from Gtopdb Tools)
GtoPdb_get_interactions (from Gtopdb Tools)
GtoPdb_get_ligand_properties (from Gtopdb Tools)
GtoPdb_search_diseases (from Gtopdb Tools)
GtoPdb_search_ligands (from Gtopdb Tools)
GtoPdb_search_targets (from Gtopdb Tools)

GxATool (3 tools)#

Local Tools:

GxA_get_experiment_expression (from Gxa Tools)
GxA_get_experiment_info (from Gxa Tools)
GxA_list_experiments (from Gxa Tools)

HALTool (1 tools)#

Local Tools:

HAL_search_archive (from Hal Tools)

HCATool (2 tools)#

Local Tools:

hca_get_file_manifest (from Hca Tools)
hca_search_projects (from Hca Tools)

HGNCTool (5 tools)#

Local Tools:

HGNC_fetch_gene_by_id (from Hgnc Tools)
HGNC_fetch_gene_by_symbol (from Hgnc Tools)
HGNC_fetch_gene_family_members (from Hgnc Tools)
HGNC_search_by_location (from Hgnc Tools)
HGNC_search_genes (from Hgnc Tools)

HLALigandAtlasTool (2 tools)#

Local Tools:

HLALigandAtlas_get_benign_peptides (from Hlaligandatlas Tools)
HLALigandAtlas_get_donors (from Hlaligandatlas Tools)

HMDBTool (6 tools)#

Local Tools:

HMDB_get_diseases (from Hmdb Rest)
HMDB_get_diseases (from Hmdb Tools)
HMDB_get_metabolite (from Hmdb Rest)
HMDB_get_metabolite (from Hmdb Tools)
HMDB_search (from Hmdb Rest)
HMDB_search (from Hmdb Tools)

HPAGetBiologicalProcessTool (1 tools)#

Local Tools:

HPA_get_biological_processes_by_gene (from Hpa Tools)

HPAGetCancerPrognosticsTool (1 tools)#

Local Tools:

HPA_get_cancer_prognostics_by_gene (from Hpa Tools)

HPAGetComparativeExpressionTool (1 tools)#

Local Tools:

HPA_get_comparative_expression_by_gene_and_cellline (from Hpa Tools)

HPAGetContextualBiologicalProcessTool (1 tools)#

Local Tools:

HPA_get_contextual_biological_process_analysis (from Hpa Tools)

HPAGetDiseaseExpressionTool (1 tools)#

Local Tools:

HPA_get_disease_expression_by_gene_tissue_disease (from Hpa Tools)

HPAGetGeneJSONTool (1 tools)#

Local Tools:

HPA_get_gene_basic_info_by_ensembl_id (from Hpa Tools)

HPAGetGenePageDetailsTool (1 tools)#

Local Tools:

HPA_get_comprehensive_gene_details_by_ensembl_id (from Hpa Tools)

HPAGetGeneXMLTool (1 tools)#

Local Tools:

HPA_get_gene_tsv_data_by_ensembl_id (from Hpa Tools)

HPAGetProteinInteractionsTool (1 tools)#

Local Tools:

HPA_get_protein_interactions_by_gene (from Hpa Tools)

HPAGetRnaExpressionBySourceTool (1 tools)#

Local Tools:

HPA_get_rna_expression_by_source (from Hpa Tools)

HPAGetRnaExpressionByTissueTool (1 tools)#

Local Tools:

HPA_get_rna_expression_in_specific_tissues (from Hpa Tools)

HPAGetSubcellularLocationTool (1 tools)#

Local Tools:

HPA_get_subcellular_location (from Hpa Tools)

HPASearchGenesTool (1 tools)#

Local Tools:

HPA_search_genes_by_query (from Hpa Tools)

HPASearchTool (1 tools)#

Local Tools:

HPA_generic_search (from Hpa Tools)

HPOTool (6 tools)#

Local Tools:

HPO_get_disease_annotations (from Hpo Tools)
HPO_get_diseases_by_phenotype (from Hpo Tools)
HPO_get_genes_by_phenotype (from Hpo Tools)
HPO_get_term (from Hpo Tools)
HPO_get_term_hierarchy (from Hpo Tools)
HPO_search_terms (from Hpo Tools)

HarmonizomeTool (6 tools)#

Local Tools:

Harmonizome_get_dataset (from Harmonizome Tools)
Harmonizome_get_gene (from Harmonizome Tools)
Harmonizome_get_gene_set_members (from Harmonizome Tools)
Harmonizome_list_datasets (from Harmonizome Tools)
Harmonizome_search (from Harmonizome Tools)
Harmonizome_search_genes (from Harmonizome Tools)

HealthDisparitiesTool (2 tools)#

Local Tools:

health_disparities_get_county_rankings_info (from Health Disparities Tools)
health_disparities_get_svi_info (from Health Disparities Tools)

Hemolytik2SearchPeptidesTool (1 tools)#

Local Tools:

Hemolytik2_search_peptides (from Hemolytik2 Tools)

HocomocoTool (2 tools)#

Local Tools:

HOCOMOCO_get_motif (from Hocomoco Tools)
HOCOMOCO_search_motifs (from Hocomoco Tools)

HuBMAPSampleTool (3 tools)#

Local Tools:

HuBMAP_get_sample (from Hubmap Sample Tools)
HuBMAP_search_donors (from Hubmap Sample Tools)
HuBMAP_search_samples (from Hubmap Sample Tools)

HuBMAPTool (4 tools)#

Local Tools:

HuBMAP_get_dataset (from Hubmap Tools)
HuBMAP_get_dataset_provenance (from Hubmap Tools)
HuBMAP_list_organs (from Hubmap Tools)
HuBMAP_search_datasets (from Hubmap Tools)

HuggingFaceInferenceTool (10 tools)#

Local Tools:

HFInference_classify_image (from Huggingface Inference Tools)
HFInference_classify_text (from Huggingface Inference Tools)
HFInference_detect_objects (from Huggingface Inference Tools)
HFInference_embed_text (from Huggingface Inference Tools)
HFInference_fill_mask (from Huggingface Inference Tools)
HFInference_ner (from Huggingface Inference Tools)
HFInference_question_answering (from Huggingface Inference Tools)
HFInference_summarize (from Huggingface Inference Tools)
HFInference_translate (from Huggingface Inference Tools)
HFInference_zero_shot_classify (from Huggingface Inference Tools)

HumanBaseTool (1 tools)#

Local Tools:

humanbase_ppi_analysis (from Humanbase Tools)

ICD10Tool (2 tools)#

Local Tools:

ICD10_get_code_info (from Icd Tools)
ICD10_search_codes (from Icd Tools)

ICDTool (3 tools)#

Local Tools:

ICD11_browse_hierarchy (from Icd Tools)
ICD11_get_entity (from Icd Tools)
ICD11_search_diseases (from Icd Tools)

ICiteSearchPublicationsTool (1 tools)#

Local Tools:

iCite_search_publications (from Icite Tools)

IDRSearchEngineTool (4 tools)#

Local Tools:

IDR_list_metadata_keys (from Idr Searchengine Tools)
IDR_list_values_for_key (from Idr Searchengine Tools)
IDR_search_images (from Idr Searchengine Tools)
IDR_search_studies (from Idr Searchengine Tools)

IDTTool (2 tools)#

Local Tools:

IDT_analyze_oligo (from Idt Tools)
IDT_check_self_dimer (from Idt Tools)

IEDBPredictionTool (4 tools)#

Local Tools:

IEDB_predict_antigen_processing (from Iedb Prediction Tools)
IEDB_predict_bcell_epitopes (from Iedb Prediction Tools)
IEDB_predict_mhci_binding (from Iedb Prediction Tools)
IEDB_predict_mhcii_binding (from Iedb Prediction Tools)

IEDBTool (12 tools)#

Local Tools:

iedb_get_epitope_antigens (from Iedb Tools)
iedb_get_epitope_mhc (from Iedb Tools)
iedb_get_epitope_references (from Iedb Tools)
iedb_get_epitope_tcell_assays (from Iedb Ext Tools)
iedb_search_antigens (from Iedb Tools)
iedb_search_bcell (from Iedb Tools)
iedb_search_bcr_sequences (from Iedb Ext Tools)
iedb_search_epitopes (from Iedb Tools)
iedb_search_mhc (from Iedb Tools)
iedb_search_references (from Iedb Tools)
iedb_search_tcell_assays (from Iedb Ext Tools)
iedb_search_tcr_sequences (from Iedb Ext Tools)

IGSRTool (3 tools)#

Local Tools:

IGSR_list_data_collections (from Igsr Tools)
IGSR_search_populations (from Igsr Tools)
IGSR_search_samples (from Igsr Tools)

IMGTTool (4 tools)#

Local Tools:

IMGT_get_gene_info (from Imgt Tools)
IMGT_get_germline_gene_fasta (from Imgt Tools)
IMGT_get_sequence (from Imgt Tools)
IMGT_search_genes (from Imgt Tools)

IMPCTool (4 tools)#

Local Tools:

IMPC_get_gene_phenotype_hits (from Impc Tools)
IMPC_get_gene_summary (from Impc Tools)
IMPC_get_phenotypes_by_gene (from Impc Tools)
IMPC_search_genes (from Impc Tools)

INDRADBTool (3 tools)#

Local Tools:

INDRA_get_evidence_count (from Indra Tools)
INDRA_get_statement_by_hash (from Indra Tools)
INDRA_get_statements (from Indra Tools)

INaturalistTool (4 tools)#

Local Tools:

iNaturalist_get_species_counts (from Inaturalist Tools)
iNaturalist_get_taxon (from Inaturalist Tools)
iNaturalist_search_observations (from Inaturalist Tools)
iNaturalist_search_taxa (from Inaturalist Tools)

IPDIMGTHLATool (3 tools)#

Local Tools:

IPD_get_hla_allele (from Ipd Imgt Hla Tools)
IPD_search_cells (from Ipd Imgt Hla Tools)
IPD_search_hla_alleles (from Ipd Imgt Hla Tools)

ISRCTNGetTrialTool (1 tools)#

Local Tools:

ISRCTN_get_trial (from Isrctn Tools)

ISRCTNSearchTool (2 tools)#

Local Tools:

ISRCTN_search_trials (from Isrctn Tools)
ISRCTN_search_trials_fielded (from Isrctn Tools)

ITISTool (4 tools)#

Local Tools:

ITIS_get_full_record (from Itis Tools)
ITIS_get_hierarchy (from Itis Tools)
ITIS_search_by_common_name (from Itis Tools)
ITIS_search_by_scientific_name (from Itis Tools)

IUCNTool (1 tools)#

Local Tools:

IUCN_get_conservation_status (from Iucn Tools)

IUPred3Tool (1 tools)#

Local Tools:

IUPred3_predict_disorder (from Iupred3 Tools)

ImmPortTool (1 tools)#

Local Tools:

ImmPort_search_studies (from Immport Tools)

IntActRESTTool (8 tools)#

Local Tools:

intact_get_complex_details (from Intact Tools)
intact_get_interaction_details (from Intact Tools)
intact_get_interaction_network (from Intact Tools)
intact_get_interactions (from Intact Tools)
intact_get_interactions_by_complex (from Intact Tools)
intact_get_interactions_by_organism (from Intact Tools)
intact_get_interactor (from Intact Tools)
intact_search_interactions (from Intact Tools)

IntOGenTool (4 tools)#

Local Tools:

IntOGen_get_drivers (from Intogen Tools)
IntOGen_get_gene_info (from Intogen Tools)
IntOGen_list_cancer_types (from Intogen Tools)
IntOGen_list_cohorts (from Intogen Tools)

InterProDomainArchTool (3 tools)#

Local Tools:

InterPro_get_clan_members (from Interpro Domain Arch Tools)
InterPro_get_protein_domain_architecture (from Interpro Domain Arch Tools)
InterPro_get_structures_for_domain (from Interpro Domain Arch Tools)

InterProEntryTool (2 tools)#

Local Tools:

InterPro_get_entries_for_protein (from Interpro Entry Tools)
InterPro_search_entries (from Interpro Entry Tools)

InterProExtTool (1 tools)#

Local Tools:

InterPro_get_proteins_by_domain (from Interpro Ext Tools)

InterProMemberDBTool (4 tools)#

Local Tools:

InterPro_get_member_signature (from Interpro Member Db Tools)
InterPro_get_structures_for_entry (from Interpro Member Db Tools)
InterPro_list_member_databases (from Interpro Member Db Tools)
InterPro_list_member_signatures (from Interpro Member Db Tools)

InterProRESTTool (4 tools)#

Local Tools:

InterPro_get_domain_details (from Interpro Tools)
InterPro_get_protein_domains (from Interpro Tools)
InterPro_get_residue_annotations (from Interpro Tools)
InterPro_search_domains (from Interpro Tools)

InterProScanTool (3 tools)#

Local Tools:

InterProScan_get_job_results (from Interproscan Tools)
InterProScan_get_job_status (from Interproscan Tools)
InterProScan_scan_sequence (from Interproscan Tools)

InterVarTool (1 tools)#

Local Tools:

InterVar_classify_variant (from Intervar Tools)

JASPARRESTTool (8 tools)#

Local Tools:

JASPAR_get_transcription_factors (from Jaspar Tools)
jaspar_get_matrix (from Jaspar Tools)
jaspar_get_matrix_versions (from Jaspar Tools)
jaspar_list_collections (from Jaspar Tools)
jaspar_list_releases (from Jaspar Tools)
jaspar_list_species (from Jaspar Tools)
jaspar_list_taxa (from Jaspar Tools)
jaspar_search_matrices (from Jaspar Tools)

KEGGExtTool (21 tools)#

Local Tools:

KEGG_convert_ids (from Kegg Conv Link Tools)
KEGG_find_compound (from Kegg Ext Tools)
KEGG_get_brite_hierarchy (from Kegg Brite Tools)
KEGG_get_compound (from Kegg Ext Tools)
KEGG_get_disease (from Kegg Disease Drug Tools)
KEGG_get_disease_genes (from Kegg Disease Drug Tools)
KEGG_get_drug (from Kegg Disease Drug Tools)
KEGG_get_drug_targets (from Kegg Disease Drug Tools)
KEGG_get_enzyme (from Kegg Ext Tools)
KEGG_get_gene_pathways (from Kegg Ext Tools)
KEGG_get_module (from Kegg Ext Tools)
KEGG_get_network (from Kegg Network Variant Tools)
KEGG_get_pathway_genes (from Kegg Ext Tools)
KEGG_get_reaction (from Kegg Ext Tools)
KEGG_get_variant (from Kegg Network Variant Tools)
KEGG_link_entries (from Kegg Conv Link Tools)
KEGG_list_brite_hierarchies (from Kegg Brite Tools)
KEGG_search_disease (from Kegg Disease Drug Tools)
KEGG_search_drug (from Kegg Disease Drug Tools)
KEGG_search_network (from Kegg Network Variant Tools)
KEGG_search_variant (from Kegg Network Variant Tools)

KEGGFindGenes (1 tools)#

Local Tools:

kegg_find_genes (from Kegg Tools)

KEGGGetGeneInfo (1 tools)#

Local Tools:

kegg_get_gene_info (from Kegg Tools)

KEGGGetPathwayInfo (1 tools)#

Local Tools:

kegg_get_pathway_info (from Kegg Tools)

KEGGListOrganisms (1 tools)#

Local Tools:

kegg_list_organisms (from Kegg Tools)

KEGGSearchPathway (1 tools)#

Local Tools:

kegg_search_pathway (from Kegg Tools)

L1000FWDTool (1 tools)#

Local Tools:

L1000FWD_sig_search (from L1000Fwd Tools)

LDlinkTool (1 tools)#

Local Tools:

LDlink_get_proxies (from Ldlink Tools)

LINCSSignatureTool (2 tools)#

Local Tools:

LINCS_list_libraries (from Lincs Tools)
LINCS_search_signatures (from Lincs Tools)

LOINCTool (4 tools)#

Local Tools:

LOINC_get_answer_list (from Loinc Tools)
LOINC_get_code_details (from Loinc Tools)
LOINC_search_forms (from Loinc Tools)
LOINC_search_tests (from Loinc Tools)

LOVDTool (3 tools)#

Local Tools:

LOVD_get_gene (from Lovd Tools)
LOVD_get_variants (from Lovd Tools)
LOVD_search_variants (from Lovd Tools)

LipidMapsGeneTool (2 tools)#

Local Tools:

LipidMaps_get_gene (from Lipidmaps Gene Tools)
LipidMaps_get_protein (from Lipidmaps Gene Tools)

LipidMapsTool (4 tools)#

Local Tools:

LipidMaps_get_compound_by_id (from Lipidmaps Tools)
LipidMaps_get_compound_by_xref (from Lipidmaps Tools)
LipidMaps_search_by_formula (from Lipidmaps Tools)
LipidMaps_search_by_name (from Lipidmaps Tools)

ListTools (1 tools)#

Local Tools:

list_tools (from Compact Mode Tools)

MARRVELGeneTool (1 tools)#

Local Tools:

MARRVEL_get_gene (from Marrvel Tools)

MARRVELOmimTool (1 tools)#

Local Tools:

MARRVEL_get_omim_phenotypes (from Marrvel Tools)

MCPAutoLoaderTool (5 tools)#

Local Tools:

mcp_auto_loader_boltz (from Boltz Mcp Loader Tools)
mcp_auto_loader_esm (from Mcp Auto Loader Esm)
mcp_auto_loader_expert_feedback (from Expert Feedback Tools)
mcp_auto_loader_txagent (from Txagent Client Tools)
mcp_auto_loader_uspto_downloader (from Uspto Downloader Tools)

MEMETool (4 tools)#

Local Tools:

MEME_discover_motifs (from Meme Tools)
MEME_fimo_scan (from Meme Tools)
MEME_list_databases (from Meme Tools)
MEME_tomtom_compare (from Meme Tools)

MGnifyAnalysesTool (1 tools)#

Local Tools:

MGnify_list_analyses (from Mgnify Tools)

MGnifyExpandedTool (9 tools)#

Local Tools:

MGnify_get_genome (from Mgnify Expanded Tools)
MGnify_get_go_terms (from Mgnify Expanded Tools)
MGnify_get_interpro (from Mgnify Expanded Tools)
MGnify_get_samples (from Mgnify Expanded Tools)
MGnify_get_study_detail (from Mgnify Expanded Tools)
MGnify_get_taxonomy (from Mgnify Expanded Tools)
MGnify_list_analysis_downloads (from Mgnify Expanded Tools)
MGnify_list_biomes (from Mgnify Expanded Tools)
MGnify_search_genomes (from Mgnify Expanded Tools)

MGnifyStudiesTool (1 tools)#

Local Tools:

MGnify_search_studies (from Mgnify Tools)

MHCMotifAtlasTool (1 tools)#

Local Tools:

MHCMotifAtlas_get_allele_ligands (from Mhcmotifatlas Tools)

MODOMICSTool (3 tools)#

Local Tools:

MODOMICS_get_modification (from Modomics Tools)
MODOMICS_list_modifications (from Modomics Tools)
MODOMICS_search_modifications (from Modomics Tools)

MPDRESTTool (1 tools)#

Local Tools:

MPD_get_phenotype_data (from Mpd Tools)

MSigDBTool (2 tools)#

Local Tools:

MSigDB_check_gene_in_set (from Msigdb Tools)
MSigDB_get_gene_set_members (from Msigdb Tools)

MarkItDownTool (1 tools)#

Local Tools:

convert_to_markdown (from Markitdown Tools)

MassIVETool (3 tools)#

Local Tools:

MassIVE_get_dataset (from Massive Tools)
MassIVE_get_protein_identifications (from Massive Tools)
MassIVE_search_datasets (from Massive Tools)

MaveDBTool (8 tools)#

Local Tools:

MaveDB_get_clinical_controls (from Mavedb Tools)
MaveDB_get_effect_matrix (from Mavedb Tools)
MaveDB_get_gnomad_variants (from Mavedb Tools)
MaveDB_get_mapped_variants (from Mavedb Tools)
MaveDB_get_score_set (from Mavedb Tools)
MaveDB_get_variant_scores (from Mavedb Tools)
MaveDB_search_experiments (from Mavedb Tools)
MaveDB_search_score_sets (from Mavedb Tools)

MculeTool (4 tools)#

Local Tools:

Mcule_get_compound (from Mcule Tools)
Mcule_get_database (from Mcule Tools)
Mcule_list_databases (from Mcule Tools)
Mcule_lookup_compound (from Mcule Tools)

MeSHTool (3 tools)#

Local Tools:

MeSH_get_descriptor (from Mesh Tools)
MeSH_search_descriptors (from Mesh Tools)
MeSH_search_terms (from Mesh Tools)

MedGenTool (3 tools)#

Local Tools:

MedGen_get_clinical_features (from Medgen Tools)
MedGen_get_condition (from Medgen Tools)
MedGen_search_conditions (from Medgen Tools)

MedlinePlusRESTTool (5 tools)#

Local Tools:

MedlinePlus_connect_lookup_by_code (from Medlineplus Tools)
MedlinePlus_get_genetics_condition_by_name (from Medlineplus Tools)
MedlinePlus_get_genetics_gene_by_name (from Medlineplus Tools)
MedlinePlus_get_genetics_index (from Medlineplus Tools)
MedlinePlus_search_topics_by_keyword (from Medlineplus Tools)

MendelianRandomizationTool (1 tools)#

Local Tools:

MR_estimate (from Mendelian Randomization Tools)

MetaAnalysisTool (1 tools)#

Local Tools:

MetaAnalysis_run (from Meta Analysis Tools)

MetaCycTool (4 tools)#

Local Tools:

MetaCyc_get_compound (from Metacyc Tools)
MetaCyc_get_pathway (from Metacyc Tools)
MetaCyc_get_reaction (from Metacyc Tools)
MetaCyc_search_pathways (from Metacyc Tools)

MetaboAnalystTool (4 tools)#

Local Tools:

MetaboAnalyst_biomarker_enrichment (from Metaboanalyst Tools)
MetaboAnalyst_get_pathway_library (from Metaboanalyst Tools)
MetaboAnalyst_name_to_id (from Metaboanalyst Tools)
MetaboAnalyst_pathway_enrichment (from Metaboanalyst Tools)

MetaboLightsRESTTool (10 tools)#

Local Tools:

metabolights_get_reference_compound (from Metabolights Tools)
metabolights_get_study (from Metabolights Tools)
metabolights_get_study_assays (from Metabolights Tools)
metabolights_get_study_data_files (from Metabolights Tools)
metabolights_get_study_factors (from Metabolights Tools)
metabolights_get_study_files (from Metabolights Tools)
metabolights_get_study_protocols (from Metabolights Tools)
metabolights_get_study_samples (from Metabolights Tools)
metabolights_list_studies (from Metabolights Tools)
metabolights_search_studies (from Metabolights Tools)

MetaboliteTool (6 tools)#

Local Tools:

HMDB_get_diseases (from Metabolite Tools)
HMDB_get_metabolite (from Metabolite Tools)
HMDB_search (from Metabolite Tools)
Metabolite_get_diseases (from Metabolite Tools)
Metabolite_get_info (from Metabolite Tools)
Metabolite_search (from Metabolite Tools)

MetabolomicsWorkbenchTool (8 tools)#

Local Tools:

MetabolomicsWorkbench_find_studies_by_phenotype (from Metabolomics Workbench Tools)
MetabolomicsWorkbench_get_compound_by_pubchem_cid (from Metabolomics Workbench Tools)
MetabolomicsWorkbench_get_gene_protein (from Metabolomics Workbench Tools)
MetabolomicsWorkbench_get_refmet_info (from Metabolomics Workbench Tools)
MetabolomicsWorkbench_get_study (from Metabolomics Workbench Tools)
MetabolomicsWorkbench_search_by_exact_mass (from Metabolomics Workbench Tools)
MetabolomicsWorkbench_search_by_mz (from Metabolomics Workbench Tools)
MetabolomicsWorkbench_search_compound_by_name (from Metabolomics Workbench Tools)

MobiDBTool (2 tools)#

Local Tools:

MobiDB_get_consensus (from Mobidb Tools)
MobiDB_get_protein (from Mobidb Tools)

Molecule2DTool (1 tools)#

Local Tools:

visualize_molecule_2d (from Molecule 2D Tools)

Molecule3DTool (1 tools)#

Local Tools:

visualize_molecule_3d (from Molecule 3D Tools)

Monarch (5 tools)#

Local Tools:

Monarch_get_gene_diseases (from Monarch Tools)
Monarch_get_gene_phenotypes (from Monarch Tools)
Monarch_search_gene (from Monarch Tools)
get_HPO_ID_by_phenotype (from Monarch Tools)
get_phenotype_by_HPO_ID (from Monarch Tools)

MonarchDiseasesForMultiplePheno (1 tools)#

Local Tools:

get_joint_associated_diseases_by_HPO_ID_list (from Monarch Tools)

MonarchV3Tool (13 tools)#

Local Tools:

MonarchV3_get_associations (from Monarch V3 Tools)
MonarchV3_get_entity (from Monarch V3 Tools)
MonarchV3_get_histopheno (from Monarch V3 Tools)
MonarchV3_get_mappings (from Monarch V3 Tools)
MonarchV3_phenotype_profile_compare (from Monarch V3 Tools)
MonarchV3_phenotype_similarity_search (from Monarch V3 Tools)
MonarchV3_search (from Monarch V3 Tools)
Monarch_get_associations (from Monarch New Tools)
Monarch_get_entity (from Monarch New Tools)
Monarch_search (from Monarch New Tools)
Mondo_get_disease (from Mondo Tools)
Mondo_get_disease_phenotypes (from Mondo Tools)
Mondo_search_disease (from Mondo Tools)

MutalyzerTool (3 tools)#

Local Tools:

Mutalyzer_back_translate (from Mutalyzer Tools)
Mutalyzer_normalize_variant (from Mutalyzer Tools)
Mutalyzer_parse_hgvs (from Mutalyzer Tools)

MyChemTool (2 tools)#

Local Tools:

MyChem_get_chemical_annotation (from Biothings Tools)
MyChem_query_chemicals (from Biothings Tools)

MyDiseaseTool (2 tools)#

Local Tools:

MyDisease_get_disease (from Mydisease Tools)
MyDisease_search_diseases (from Mydisease Tools)

MyGeneTool (3 tools)#

Local Tools:

MyGene_batch_query (from Biothings Tools)
MyGene_get_gene_annotation (from Biothings Tools)
MyGene_query_genes (from Biothings Tools)

MyVariantTool (3 tools)#

Local Tools:

MyVariant_get_pathogenicity_scores (from Biothings Tools)
MyVariant_get_variant_annotation (from Biothings Tools)
MyVariant_query_variants (from Biothings Tools)

NCATool (3 tools)#

Local Tools:

NCA_calculate_bioavailability (from Nca Tools)
NCA_compute_parameters (from Nca Tools)
NCA_fit_one_compartment (from Nca Tools)

NCBIBlastTool (2 tools)#

Local Tools:

BLAST_nucleotide_search (from Blast Tools)
BLAST_protein_search (from Blast Tools)

NCBIDatasetsTool (8 tools)#

Local Tools:

NCBIDatasets_get_gene (from Ncbi Datasets Tools)
NCBIDatasets_get_gene_by_symbol (from Ncbi Datasets Tools)
NCBIDatasets_get_genome_assembly (from Ncbi Datasets Tools)
NCBIDatasets_get_orthologs (from Ncbi Datasets Tools)
NCBIDatasets_get_sequence_reports (from Ncbi Datasets Tools)
NCBIDatasets_get_taxonomy (from Ncbi Datasets Tools)
NCBIDatasets_list_genomes_by_taxon (from Ncbi Datasets Tools)
NCBIDatasets_suggest_taxonomy (from Ncbi Datasets Tools)

NCBINucleotideSearchTool (3 tools)#

Local Tools:

NCBI_fetch_accessions (from Ncbi Nucleotide Tools)
NCBI_get_sequence (from Ncbi Nucleotide Tools)
NCBI_search_nucleotide (from Ncbi Nucleotide Tools)

NCBISRATool (5 tools)#

Local Tools:

NCBI_SRA_get_download_urls (from Ncbi Sra Tools)
NCBI_SRA_get_run_info (from Ncbi Sra Tools)
NCBI_SRA_link_to_biosample (from Ncbi Sra Tools)
NCBI_SRA_locate_run_files (from Ncbi Sra Tools)
NCBI_SRA_search_runs (from Ncbi Sra Tools)

NCBIVariationTool (8 tools)#

Local Tools:

NCBIVariation_alfa_frequencies_by_rsid (from Ncbi Variation Tools)
NCBIVariation_hgvs_to_spdi (from Ncbi Variation Tools)
NCBIVariation_rsid_lookup (from Ncbi Variation Tools)
NCBIVariation_spdi_canonical (from Ncbi Variation Tools)
NCBIVariation_spdi_equivalents (from Ncbi Variation Tools)
NCBIVariation_spdi_to_hgvs (from Ncbi Variation Tools)
NCBIVariation_spdi_to_rsids (from Ncbi Variation Tools)
NCBIVariation_vcf_to_spdi (from Ncbi Variation Tools)

NCCNGuidelineTool (3 tools)#

Local Tools:

NCCN_get_patient_guideline (from Ada Aha Nccn Tools)
NCCN_list_patient_guidelines (from Ada Aha Nccn Tools)
NCCN_search_guidelines (from Ada Aha Nccn Tools)

NCICACTUSTool (1 tools)#

Local Tools:

NCICACTUS_resolve (from Nci Cactus Tools)

NCIThesaurusTool (5 tools)#

Local Tools:

NCIThesaurus_get_children (from Nci Thesaurus Tools)
NCIThesaurus_get_concept (from Nci Thesaurus Tools)
NCIThesaurus_get_concept_maps (from Nci Thesaurus Tools)
NCIThesaurus_get_parents (from Nci Thesaurus Tools)
NCIThesaurus_search (from Nci Thesaurus Tools)

NDExTool (3 tools)#

Local Tools:

NDEx_get_network (from Ndex Tools)
NDEx_get_network_summary (from Ndex Tools)
NDEx_search_networks (from Ndex Tools)

NEBTmTool (2 tools)#

Local Tools:

NEB_Tm_calculate (from Neb Tm Tools)
NEB_Tm_list_polymerases (from Neb Tm Tools)

NHANESTool (3 tools)#

Local Tools:

NHANES_download_and_parse (from Nhanes Tools)
nhanes_get_dataset_info (from Nhanes Tools)
nhanes_search_datasets (from Nhanes Tools)

NICEGuidelineFullTextTool (1 tools)#

Local Tools:

NICE_Guideline_Full_Text (from Unified Guideline Tools)

NICEWebScrapingTool (1 tools)#

Local Tools:

NICE_Clinical_Guidelines_Search (from Unified Guideline Tools)

NPAtlasCompoundTool (1 tools)#

Local Tools:

NPAtlas_get_compound (from Npatlas Tools)

NPAtlasSearchTool (1 tools)#

Local Tools:

NPAtlas_search_compounds (from Npatlas Tools)

NetworkProximityTool (1 tools)#

Local Tools:

Network_proximity (from Network Proximity Tools)

NeuroMorphoTool (7 tools)#

Local Tools:

NeuroMorpho_get_field_values (from Neuromorpho Tools)
NeuroMorpho_get_literature (from Neuromorpho Tools)
NeuroMorpho_get_morphometry (from Neuromorpho Tools)
NeuroMorpho_get_neuron (from Neuromorpho Tools)
NeuroMorpho_get_persistence_vector (from Neuromorpho Tools)
NeuroMorpho_search_literature (from Neuromorpho Tools)
NeuroMorpho_search_neurons (from Neuromorpho Tools)

NextstrainTool (2 tools)#

Local Tools:

Nextstrain_get_dataset (from Nextstrain Tools)
Nextstrain_list_datasets (from Nextstrain Tools)

NorineGetPeptideTool (1 tools)#

Local Tools:

Norine_get_peptide (from Norine Tools)

NvidiaNIMTool (16 tools)#

Local Tools:

NvidiaNIM_alphafold2 (from Nvidia Nim Tools)
NvidiaNIM_alphafold2_multimer (from Nvidia Nim Tools)
NvidiaNIM_boltz2 (from Nvidia Nim Tools)
NvidiaNIM_diffdock (from Nvidia Nim Tools)
NvidiaNIM_esm2_650m (from Nvidia Nim Tools)
NvidiaNIM_esmfold (from Nvidia Nim Tools)
NvidiaNIM_evo2 (from Nvidia Nim Tools)
NvidiaNIM_genmol (from Nvidia Nim Tools)
NvidiaNIM_maisi (from Nvidia Nim Tools)
NvidiaNIM_molmim (from Nvidia Nim Tools)
NvidiaNIM_msa_search (from Nvidia Nim Tools)
NvidiaNIM_openfold2 (from Nvidia Nim Tools)
NvidiaNIM_openfold3 (from Nvidia Nim Tools)
NvidiaNIM_proteinmpnn (from Nvidia Nim Tools)
NvidiaNIM_rfdiffusion (from Nvidia Nim Tools)
NvidiaNIM_vista3d (from Nvidia Nim Tools)

OBISOccurrenceTool (1 tools)#

Local Tools:

OBIS_search_occurrences (from Obis Tools)

OBISTaxaTool (1 tools)#

Local Tools:

OBIS_search_taxa (from Obis Tools)

ODPHPItemList (1 tools)#

Local Tools:

odphp_itemlist (from Odphp Tools)

ODPHPMyHealthfinder (1 tools)#

Local Tools:

odphp_myhealthfinder (from Odphp Tools)

ODPHPOutlinkFetch (1 tools)#

Local Tools:

odphp_outlink_fetch (from Odphp Tools)

ODPHPTopicSearch (1 tools)#

Local Tools:

odphp_topicsearch (from Odphp Tools)

OLSRESTTool (6 tools)#

Local Tools:

ols_get_efo_ontology_info (from Efo Tools)
ols_get_efo_term (from Efo Tools)
ols_get_efo_term_children (from Efo Tools)
ols_get_efo_term_descendants (from Efo Tools)
ols_list_ontologies (from Efo Tools)
ols_search_efo_terms (from Efo Tools)

OLSTool (8 tools)#

Local Tools:

ols_find_similar_terms (from Ols Tools)
ols_get_ontology_info (from Ols Tools)
ols_get_term_ancestors (from Ols Tools)
ols_get_term_children (from Ols Tools)
ols_get_term_info (from Ols Tools)
ols_get_term_xrefs (from Ols Tools)
ols_search_ontologies (from Ols Tools)
ols_search_terms (from Ols Tools)

OMATool (7 tools)#

Local Tools:

OMA_get_genome_pair_orthologs (from Oma Tools)
OMA_get_group (from Oma Tools)
OMA_get_hog (from Oma Tools)
OMA_get_orthologs (from Oma Tools)
OMA_get_protein (from Oma Tools)
OMA_get_protein_go (from Oma Tools)
OMA_resolve_xref (from Oma Tools)

OMIMTool (4 tools)#

Local Tools:

OMIM_get_clinical_synopsis (from Omim Tools)
OMIM_get_entry (from Omim Tools)
OMIM_get_gene_map (from Omim Tools)
OMIM_search (from Omim Tools)

OPSINNameToStructureTool (1 tools)#

Local Tools:

OPSIN_name_to_structure (from Opsin Tools)

ORCIDTool (6 tools)#

Local Tools:

ORCID_get_employments (from Orcid Tools)
ORCID_get_fundings (from Orcid Tools)
ORCID_get_peer_reviews (from Orcid Tools)
ORCID_get_profile (from Orcid Tools)
ORCID_get_works (from Orcid Tools)
ORCID_search_researchers (from Orcid Tools)

OSFPreprintsTool (1 tools)#

Local Tools:

OSF_search_preprints (from Osf Preprints Tools)

OmniPathTool (9 tools)#

Local Tools:

OmniPath_get_annotation_resource_geneset (from Omnipath Tools)
OmniPath_get_cell_communication_annotations (from Omnipath Tools)
OmniPath_get_complexes (from Omnipath Tools)
OmniPath_get_dorothea_regulon (from Omnipath Tools)
OmniPath_get_enzyme_substrate (from Omnipath Tools)
OmniPath_get_intercell_roles (from Omnipath Tools)
OmniPath_get_ligand_receptor_interactions (from Omnipath Tools)
OmniPath_get_signaling_interactions (from Omnipath Tools)
OmniPath_get_tf_target_interactions (from Omnipath Tools)

OncoKBTool (6 tools)#

Local Tools:

OncoKB_annotate_copy_number (from Oncokb Tools)
OncoKB_annotate_mutations (from Oncokb Tools)
OncoKB_annotate_variant (from Oncokb Tools)
OncoKB_get_cancer_genes (from Oncokb Tools)
OncoKB_get_gene_info (from Oncokb Tools)
OncoKB_get_levels (from Oncokb Tools)

OncoTreeGetTypeTool (1 tools)#

Local Tools:

OncoTree_get_type (from Oncotree Tools)

OncoTreeListTissuesTool (1 tools)#

Local Tools:

OncoTree_list_tissues (from Oncotree Tools)

OncoTreeSearchTool (1 tools)#

Local Tools:

OncoTree_search (from Oncotree Tools)

OpenAIREDatasetTool (1 tools)#

Local Tools:

OpenAIRE_search_datasets (from Openaire Dataset Tools)

OpenAIRETool (2 tools)#

Local Tools:

OpenAIRE_search_projects (from Openaire Tools)
OpenAIRE_search_publications (from Openaire Tools)

OpenAlexGuidelinesTool (1 tools)#

Local Tools:

OpenAlex_Guidelines_Search (from Unified Guideline Tools)

OpenAlexRESTTool (9 tools)#

Local Tools:

openalex_get_author (from Openalex Tools)
openalex_get_institution (from Openalex Tools)
openalex_get_source (from Openalex Tools)
openalex_get_work (from Openalex Tools)
openalex_get_work_by_doi (from Openalex Tools)
openalex_search_authors (from Openalex Tools)
openalex_search_institutions (from Openalex Tools)
openalex_search_sources (from Openalex Tools)
openalex_search_works (from Openalex Tools)

OpenAlexTool (1 tools)#

Local Tools:

openalex_literature_search (from Openalex Tools)

OpenCRAVATTool (2 tools)#

Local Tools:

OpenCRAVAT_annotate_variant (from Opencravat Tools)
OpenCRAVAT_list_annotators (from Opencravat Tools)

OpenFDAApprovalTool (3 tools)#

Local Tools:

OpenFDA_get_approval_history (from Openfda Approval Tools)
OpenFDA_get_approved_products (from Openfda Approval Tools)
OpenFDA_search_drug_approvals (from Openfda Approval Tools)

OpenFDADrugEventsTool (1 tools)#

Local Tools:

OpenFDA_search_drug_events (from Openfda Tools)

OpenGWASTool (1 tools)#

Local Tools:

OpenGWAS_get_mr_instruments (from Opengwas Tools)

OpenGenesGeneTool (1 tools)#

Local Tools:

OpenGenes_get_gene (from Open Genes Tools)

OpenGenesSearchTool (1 tools)#

Local Tools:

OpenGenes_search_genes (from Open Genes Tools)

OpenNeuroTool (7 tools)#

Local Tools:

OpenNeuro_advanced_search (from Openneuro Tools)
OpenNeuro_get_dataset (from Openneuro Tools)
OpenNeuro_get_dataset_snapshots (from Openneuro Tools)
OpenNeuro_get_snapshot_files (from Openneuro Tools)
OpenNeuro_get_snapshot_validation (from Openneuro Tools)
OpenNeuro_list_datasets (from Openneuro Tools)
OpenNeuro_search_by_modality (from Openneuro Tools)

OpenTarget (72 tools)#

Local Tools:

OpenTargets_drug_pharmacogenomics_data (from Opentarget Tools)
OpenTargets_get_approved_indications_by_drug_chemblId (from Opentarget Tools)
OpenTargets_get_associated_diseases_by_drug_chemblId (from Opentarget Tools)
OpenTargets_get_associated_drugs_by_disease_efoId (from Opentarget Tools)
OpenTargets_get_associated_drugs_by_target_ensemblID (from Opentarget Tools)
OpenTargets_get_associated_phenotypes_by_disease_efoId (from Opentarget Tools)
OpenTargets_get_associated_targets_by_disease_efoId (from Opentarget Tools)
OpenTargets_get_associated_targets_by_drug_chemblId (from Opentarget Tools)
OpenTargets_get_biological_mouse_models_by_ensemblID (from Opentarget Tools)
OpenTargets_get_chemical_probes_by_target_ensemblID (from Opentarget Tools)
OpenTargets_get_credible_set_colocalisation (from Opentarget Genetics Tools)
OpenTargets_get_credible_set_detail (from Opentarget Genetics Tools)
OpenTargets_get_disease_ancestors_parents_by_efoId (from Opentarget Tools)
OpenTargets_get_disease_descendants_children_by_efoId (from Opentarget Tools)
OpenTargets_get_disease_description_by_efoId (from Opentarget Tools)
OpenTargets_get_disease_id_description_by_name (from Opentarget Tools)
OpenTargets_get_disease_ids_by_efoId (from Idmap Tools)
OpenTargets_get_disease_ids_by_name (from Idmap Tools)
OpenTargets_get_disease_locations_by_efoId (from Opentarget Tools)
OpenTargets_get_disease_synonyms_by_efoId (from Opentarget Tools)
OpenTargets_get_disease_therapeutic_areas_by_efoId (from Opentarget Tools)
OpenTargets_get_diseases_phenotypes_by_target_ensembl (from Opentarget Tools)
OpenTargets_get_drug_adverse_events_by_chemblId (from Opentarget Tools)
OpenTargets_get_drug_approval_status_by_chemblId (from Opentarget Tools)
OpenTargets_get_drug_blackbox_status_by_chembl_ID (from Opentarget Tools)
OpenTargets_get_drug_description_by_chemblId (from Opentarget Tools)
OpenTargets_get_drug_indications_by_chemblId (from Opentarget Tools)
OpenTargets_get_drug_mechanisms_of_action_by_chemblId (from Opentarget Tools)
OpenTargets_get_drug_names_by_chemblId (from Opentarget Tools)
OpenTargets_get_drug_synonyms_by_chemblId (from Opentarget Tools)
OpenTargets_get_drug_trade_names_by_chemblId (from Opentarget Tools)
OpenTargets_get_drug_warnings_by_chemblId (from Opentarget Tools)
OpenTargets_get_evidence_by_datasource (from Opentarget Tools)
OpenTargets_get_gene_ontology_terms_by_goID (from Opentarget Tools)
OpenTargets_get_gwas_study (from Opentarget Genetics Tools)
OpenTargets_get_known_drugs_by_drug_chemblId (from Opentarget Tools)
OpenTargets_get_parent_child_molecules_by_chembl_ID (from Opentarget Tools)
OpenTargets_get_publications_by_disease_efoId (from Opentarget Tools)
OpenTargets_get_publications_by_drug_chemblId (from Opentarget Tools)
OpenTargets_get_publications_by_target_ensemblID (from Opentarget Tools)
OpenTargets_get_similar_entities_by_disease_efoId (from Opentarget Tools)
OpenTargets_get_similar_entities_by_drug_chemblId (from Opentarget Tools)
OpenTargets_get_similar_entities_by_target_ensemblID (from Opentarget Tools)
OpenTargets_get_study_credible_sets (from Opentarget Genetics Tools)
OpenTargets_get_target_cancer_hallmarks (from Opentarget Tools)
OpenTargets_get_target_classes_by_ensemblID (from Opentarget Tools)
OpenTargets_get_target_constraint_info_by_ensemblID (from Opentarget Tools)
OpenTargets_get_target_depmap_essentiality (from Opentarget Tools)
OpenTargets_get_target_enabling_packages_by_ensemblID (from Opentarget Tools)
OpenTargets_get_target_expression_by_ensemblID (from Opentarget Tools)
OpenTargets_get_target_gene_ontology_by_ensemblID (from Opentarget Tools)
OpenTargets_get_target_genomic_location_by_ensemblID (from Opentarget Tools)
OpenTargets_get_target_homologues_by_ensemblID (from Opentarget Tools)
OpenTargets_get_target_id_description_by_name (from Opentarget Tools)
OpenTargets_get_target_info_by_ensemblID (from Opentarget Tools)
OpenTargets_get_target_interactions_by_ensemblID (from Opentarget Tools)
OpenTargets_get_target_pathways_by_ensemblID (from Opentarget Tools)
OpenTargets_get_target_prioritisation (from Opentarget Tools)
OpenTargets_get_target_safety_profile_by_ensemblID (from Opentarget Tools)
OpenTargets_get_target_subcell_locations_by_ensembl_ID (from Opentarget Tools)
OpenTargets_get_target_synonyms_by_ensemblID (from Opentarget Tools)
OpenTargets_get_target_tractability_by_ensemblID (from Opentarget Tools)
OpenTargets_get_variant_credible_sets (from Opentarget Genetics Tools)
OpenTargets_get_variant_effect_predictions (from Opentarget Genetics Tools)
OpenTargets_get_variant_info (from Opentarget Genetics Tools)
OpenTargets_get_variant_pharmacogenomics (from Opentarget Genetics Tools)
OpenTargets_get_variant_transcript_consequences (from Opentarget Genetics Tools)
OpenTargets_map_any_disease_id_to_all_other_ids (from Idmap Tools)
OpenTargets_multi_entity_search_by_query_string (from Opentarget Tools)
OpenTargets_search_category_counts_by_query_string (from Opentarget Tools)
OpenTargets_search_gwas_studies_by_disease (from Opentarget Genetics Tools)
OpenTargets_target_disease_evidence (from Opentarget Tools)

OpenTreeTool (4 tools)#

Local Tools:

OpenTree_get_induced_subtree (from Opentree Tools)
OpenTree_get_mrca (from Opentree Tools)
OpenTree_get_taxon (from Opentree Tools)
OpenTree_match_names (from Opentree Tools)

OpentargetToolDrugNameMatch (2 tools)#

Local Tools:

OpenTargets_get_drug_chembId_by_generic_name (from Opentarget Tools)
OpenTargets_get_drug_id_description_by_name (from Opentarget Tools)

OrphanetTool (10 tools)#

Local Tools:

Orphanet_get_classification (from Orphanet Tools)
Orphanet_get_disease (from Orphanet Tools)
Orphanet_get_epidemiology (from Orphanet Tools)
Orphanet_get_gene_diseases (from Orphanet Tools)
Orphanet_get_genes (from Orphanet Tools)
Orphanet_get_icd_mapping (from Orphanet Tools)
Orphanet_get_natural_history (from Orphanet Tools)
Orphanet_get_phenotypes (from Orphanet Tools)
Orphanet_search_by_name (from Orphanet Tools)
Orphanet_search_diseases (from Orphanet Tools)

OrthoDBTool (4 tools)#

Local Tools:

OrthoDB_get_group_details (from Orthodb Tools)
OrthoDB_get_group_fasta (from Orthodb Tools)
OrthoDB_get_orthologs (from Orthodb Tools)
OrthoDB_search_groups (from Orthodb Tools)

OxOTool (2 tools)#

Local Tools:

OxO_get_ontology_mappings (from Oxo Tools)
OxO_search_ontology_mappings (from Oxo Tools)

PANTHERTool (3 tools)#

Local Tools:

PANTHER_enrichment (from Panther Tools)
PANTHER_gene_info (from Panther Tools)
PANTHER_ortholog (from Panther Tools)

PDBECompoundTool (2 tools)#

Local Tools:

PDBe_get_compound_structures (from Pdbe Compound Tools)
PDBe_get_compound_summary (from Pdbe Compound Tools)

PDBeAPIRESTTool (10 tools)#

Local Tools:

pdbe_get_entry_assemblies (from Pdbe Api Tools)
pdbe_get_entry_experiment (from Pdbe Api Tools)
pdbe_get_entry_molecules (from Pdbe Api Tools)
pdbe_get_entry_observed_residues_ratio (from Pdbe Api Tools)
pdbe_get_entry_publications (from Pdbe Api Tools)
pdbe_get_entry_quality (from Pdbe Api Tools)
pdbe_get_entry_related_publications (from Pdbe Api Tools)
pdbe_get_entry_secondary_structure (from Pdbe Api Tools)
pdbe_get_entry_status (from Pdbe Api Tools)
pdbe_get_entry_summary (from Pdbe Api Tools)

PDBeLigandsTool (2 tools)#

Local Tools:

PDBe_get_residue_listing (from Pdbe Ligands Tools)
PDBe_get_structure_ligands (from Pdbe Ligands Tools)

PDBePISATool (3 tools)#

Local Tools:

PDBePISA_get_assemblies (from Pdbepisa Tools)
PDBePISA_get_interfaces (from Pdbepisa Tools)
PDBePISA_get_monomer_analysis (from Pdbepisa Tools)

PDBeSIFTSTool (4 tools)#

Local Tools:

PDBeSIFTS_get_all_structures (from Pdbe Sifts Tools)
PDBeSIFTS_get_best_structures (from Pdbe Sifts Tools)
PDBeSIFTS_get_pdb_to_uniprot (from Pdbe Sifts Tools)
PDBeSIFTS_get_scop_mapping (from Pdbe Sifts Tools)

PDBeSearchTool (3 tools)#

Local Tools:

PDBeSearch_get_compound (from Pdbe Search Tools)
PDBeSearch_search_by_organism (from Pdbe Search Tools)
PDBeSearch_search_structures (from Pdbe Search Tools)

PDBeValidationTool (2 tools)#

Local Tools:

PDBeValidation_get_outlier_residues (from Pdbe Validation Tools)
PDBeValidation_get_quality_scores (from Pdbe Validation Tools)

PDBe_KB_Tool (4 tools)#

Local Tools:

PDBe_KB_get_interface_residues (from Pdbe Kb Tools)
PDBe_KB_get_ligand_sites (from Pdbe Kb Tools)
PDBe_KB_get_summary_stats (from Pdbe Kb Tools)
PDBe_KB_get_superposition_clusters (from Pdbe Kb Tools)

PDCTool (6 tools)#

Local Tools:

PDC_get_clinical_data (from Pdc Tools)
PDC_get_gene_protein (from Pdc Tools)
PDC_get_quant_data_matrix (from Pdc Tools)
PDC_get_study_summary (from Pdc Tools)
PDC_list_programs (from Pdc Tools)
PDC_search_studies (from Pdc Tools)

PEPlife2SearchPeptidesTool (1 tools)#

Local Tools:

PEPlife2_search_peptides (from Peplife2 Tools)

PGSCatalogTool (4 tools)#

Local Tools:

PGSCatalog_get_performance_metrics (from Pgs Catalog Tools)
PGSCatalog_get_score (from Pgs Catalog Tools)
PGSCatalog_get_scores_by_trait (from Pgs Catalog Tools)
PGSCatalog_search_traits (from Pgs Catalog Tools)

PMCTool (1 tools)#

Local Tools:

PMC_search_papers (from Pmc Tools)

PRIDERESTTool (4 tools)#

Local Tools:

PRIDE_get_project (from Pride Tools)
PRIDE_get_project_files (from Pride Tools)
PRIDE_get_projects_for_protein (from Pride Tools)
PRIDE_search_proteomics (from Pride Tools)

PROSITETool (4 tools)#

Local Tools:

PROSITE_get_entry (from Prosite Tools)
PROSITE_scan_sequence (from Prosite Tools)
PROSITE_search (from Prosite Tools)
ScanProsite_find_proteins_with_motif (from Scanprosite Tools)

PackageTool (163 tools)#

Local Tools:

get_albumentations_info (from Image Processing Tools)
get_altair_info (from Visualization Tools)
get_anndata_info (from Single Cell Tools)
get_arboreto_info (from Genomics Tools)
get_arxiv_info (from Bioinformatics Core Tools)
get_ase_info (from Structural Biology Tools)
get_astropy_info (from Physics Astronomy Tools)
get_biopandas_info (from Structural Biology Tools)
get_biopython_info (from Bioinformatics Core Tools)
get_bioservices_info (from Bioinformatics Core Tools)
get_biotite_info (from Bioinformatics Core Tools)
get_bokeh_info (from Visualization Tools)
get_brian2_info (from Neuroscience Tools)
get_cartopy_info (from Earth Sciences Tools)
get_catboost_info (from Machine Learning Tools)
get_cellpose_info (from Visualization Tools)
get_cellrank_info (from Single Cell Tools)
get_cellxgene_census_info (from Genomics Tools)
get_cftime_info (from Earth Sciences Tools)
get_chembl_webresource_client_info (from Cheminformatics Tools)
get_clair3_info (from Genomics Tools)
get_cobra_info (from Cheminformatics Tools)
get_cobrapy_info (from Machine Learning Tools)
get_cooler_info (from Scientific Computing Tools)
get_cryosparc_tools_info (from Bioinformatics Core Tools)
get_cupy_info (from Scientific Computing Tools)
get_cyvcf2_info (from Genomics Tools)
get_dask_info (from Scientific Computing Tools)
get_datamol_info (from Cheminformatics Tools)
get_datashader_info (from Visualization Tools)
get_deepchem_info (from Cheminformatics Tools)
get_deeppurpose_info (from Machine Learning Tools)
get_deeptools_info (from Genomics Tools)
get_deepxde_info (from Machine Learning Tools)
get_dendropy_info (from Bioinformatics Core Tools)
get_descriptastorus_info (from Structural Biology Tools)
get_diffdock_info (from Structural Biology Tools)
get_dscribe_info (from Cheminformatics Tools)
get_elephant_info (from Neuroscience Tools)
get_episcanpy_info (from Single Cell Tools)
get_ete3_info (from Bioinformatics Core Tools)
get_faiss_info (from Machine Learning Tools)
get_fanc_info (from Bioinformatics Core Tools)
get_flask_info (from Bioinformatics Core Tools)
get_flowio_info (from Bioinformatics Core Tools)
get_flowkit_info (from Bioinformatics Core Tools)
get_flowutils_info (from Scientific Computing Tools)
get_freesasa_info (from Structural Biology Tools)
get_galpy_info (from Physics Astronomy Tools)
get_geopandas_info (from Earth Sciences Tools)
get_gget_info (from Bioinformatics Core Tools)
get_googlesearch_python_info (from Bioinformatics Core Tools)
get_gseapy_info (from Genomics Tools)
get_h5py_info (from Scientific Computing Tools)
get_harmony_pytorch_info (from Machine Learning Tools)
get_hmmlearn_info (from Machine Learning Tools)
get_holoviews_info (from Visualization Tools)
get_htmd_info (from Structural Biology Tools)
get_igraph_info (from Visualization Tools)
get_imageio_info (from Image Processing Tools)
get_imbalanced_learn_info (from Machine Learning Tools)
get_jcvi_info (from Genomics Tools)
get_joblib_info (from Scientific Computing Tools)
get_khmer_info (from Bioinformatics Core Tools)
get_kipoiseq_info (from Genomics Tools)
get_lifelines_info (from Bioinformatics Core Tools)
get_lightgbm_info (from Machine Learning Tools)
get_loompy_info (from Bioinformatics Core Tools)
get_mageck_info (from Bioinformatics Core Tools)
get_matplotlib_info (from Visualization Tools)
get_mdanalysis_info (from Structural Biology Tools)
get_mdtraj_info (from Structural Biology Tools)
get_mne_info (from Neuroscience Tools)
get_molfeat_info (from Cheminformatics Tools)
get_molvs_info (from Cheminformatics Tools)
get_mordred_info (from Cheminformatics Tools)
get_msprime_info (from Bioinformatics Core Tools)
get_mudata_info (from Single Cell Tools)
get_neo_info (from Neuroscience Tools)
get_netcdf4_info (from Earth Sciences Tools)
get_networkx_info (from Bioinformatics Core Tools)
get_nglview_info (from Structural Biology Tools)
get_nilearn_info (from Neuroscience Tools)
get_numba_info (from Bioinformatics Core Tools)
get_numpy_info (from Scientific Computing Tools)
get_openbabel_info (from Cheminformatics Tools)
get_openchem_info (from Cheminformatics Tools)
get_opencv_info (from Visualization Tools)
get_openmm_info (from Structural Biology Tools)
get_optlang_info (from Scientific Computing Tools)
get_optuna_info (from Machine Learning Tools)
get_palantir_info (from Single Cell Tools)
get_pandas_info (from Scientific Computing Tools)
get_patsy_info (from Scientific Computing Tools)
get_pdbfixer_info (from Bioinformatics Core Tools)
get_pillow_info (from Image Processing Tools)
get_plantcv_info (from Visualization Tools)
get_plip_info (from Bioinformatics Core Tools)
get_plotly_info (from Visualization Tools)
get_poliastro_info (from Bioinformatics Core Tools)
get_poretools_info (from Genomics Tools)
get_prody_info (from Bioinformatics Core Tools)
get_pubchempy_info (from Cheminformatics Tools)
get_pybedtools_info (from Genomics Tools)
get_pybigwig_info (from Bioinformatics Core Tools)
get_pydeseq2_info (from Genomics Tools)
get_pyensembl_info (from Genomics Tools)
get_pyephem_info (from Physics Astronomy Tools)
get_pyfaidx_info (from Genomics Tools)
get_pyfasta_info (from Genomics Tools)
get_pykalman_info (from Bioinformatics Core Tools)
get_pyliftover_info (from Genomics Tools)
get_pymassspec_info (from Bioinformatics Core Tools)
get_pymed_info (from Bioinformatics Core Tools)
get_pymzml_info (from Machine Learning Tools)
get_pypdf2_info (from Bioinformatics Core Tools)
get_pyranges_info (from Genomics Tools)
get_pyrosetta_info (from Structural Biology Tools)
get_pysam_info (from Genomics Tools)
get_pyscenic_info (from Single Cell Tools)
get_pyscf_info (from Structural Biology Tools)
get_pyscreener_info (from Bioinformatics Core Tools)
get_pytdc_info (from Bioinformatics Core Tools)
get_python_libsbml_info (from Machine Learning Tools)
get_pytorch_info (from Machine Learning Tools)
get_pyvcf_info (from Genomics Tools)
get_pyvis_info (from Visualization Tools)
get_qutip_info (from Physics Astronomy Tools)
get_rasterio_info (from Earth Sciences Tools)
get_rdkit_info (from Cheminformatics Tools)
get_reportlab_info (from Genomics Tools)
get_requests_info (from Bioinformatics Core Tools)
get_ruptures_info (from Bioinformatics Core Tools)
get_scanorama_info (from Single Cell Tools)
get_scanpy_info (from Single Cell Tools)
get_schnetpack_info (from Machine Learning Tools)
get_scholarly_info (from Bioinformatics Core Tools)
get_scikit_bio_info (from Bioinformatics Core Tools)
get_scikit_image_info (from Visualization Tools)
get_scikit_learn_info (from Machine Learning Tools)
get_scipy_info (from Scientific Computing Tools)
get_scrublet_info (from Single Cell Tools)
get_scvelo_info (from Single Cell Tools)
get_scvi_tools_info (from Single Cell Tools)
get_seaborn_info (from Visualization Tools)
get_skopt_info (from Machine Learning Tools)
get_souporcell_info (from Single Cell Tools)
get_statsmodels_info (from Machine Learning Tools)
get_sunpy_info (from Physics Astronomy Tools)
get_sympy_info (from Scientific Computing Tools)
get_tiledb_info (from Scientific Computing Tools)
get_tiledbsoma_info (from Single Cell Tools)
get_torch_geometric_info (from Machine Learning Tools)
get_tqdm_info (from Scientific Computing Tools)
get_trackpy_info (from Bioinformatics Core Tools)
get_tskit_info (from Bioinformatics Core Tools)
get_umap_learn_info (from Machine Learning Tools)
get_velocyto_info (from Single Cell Tools)
get_viennarna_info (from Genomics Tools)
get_xarray_info (from Scientific Computing Tools)
get_xesmf_info (from Earth Sciences Tools)
get_xgboost_info (from Machine Learning Tools)
get_zarr_info (from Scientific Computing Tools)

PaleobiologyRESTTool (1 tools)#

Local Tools:

Paleobiology_get_fossils (from Paleobiology Tools)

PanglaoDBMarkerTool (3 tools)#

Local Tools:

PanglaoDB_cell_types_for_gene (from Panglaodb Tools)
PanglaoDB_list_cell_types (from Panglaodb Tools)
PanglaoDB_markers_for_cell_type (from Panglaodb Tools)

PathoplexusCountTool (3 tools)#

Local Tools:

Pathoplexus_count_sequences (from Pathoplexus Tools)
Pathoplexus_get_sequence_details (from Pathoplexus Tools)
Pathoplexus_get_sequences_fasta (from Pathoplexus Tools)

PathoplexusMutationsTool (1 tools)#

Local Tools:

Pathoplexus_get_mutations (from Pathoplexus Tools)

PathwayCommonsTool (6 tools)#

Local Tools:

PathwayCommons_get_neighborhood (from Pathwaycommons Tools)
PathwayCommons_get_pathway (from Pathwaycommons Tools)
PathwayCommons_paths_between (from Pathwaycommons Tools)
PathwayCommons_search (from Pathwaycommons Tools)
pc_get_interactions (from Pathway Commons Tools)
pc_search_pathways (from Pathway Commons Tools)

PepCalcTool (1 tools)#

Local Tools:

PepCalc_peptide_properties (from Pepcalc Tools)

PeptideAtlasGetObservedPeptidesTool (1 tools)#

Local Tools:

PeptideAtlas_get_observed_peptides (from Peptideatlas Tools)

PfamTool (6 tools)#

Local Tools:

Pfam_get_family_detail (from Pfam Tools)
Pfam_get_family_proteins (from Pfam Tools)
Pfam_get_family_proteomes (from Pfam Tools)
Pfam_get_protein_annotations (from Pfam Tools)
Pfam_search_clans (from Pfam Tools)
Pfam_search_families (from Pfam Tools)

PharmGKBTool (10 tools)#

Local Tools:

PharmGKB_get_clinical_annotations (from Pharmgkb Tools)
PharmGKB_get_dosing_guidelines (from Pharmgkb Tools)
PharmGKB_get_drug_details (from Pharmgkb Tools)
PharmGKB_get_drug_label_annotations (from Pharmgkb Tools)
PharmGKB_get_gene_details (from Pharmgkb Tools)
PharmGKB_get_pathway (from Pharmgkb Tools)
PharmGKB_get_variant_annotations (from Pharmgkb Tools)
PharmGKB_search_drugs (from Pharmgkb Tools)
PharmGKB_search_genes (from Pharmgkb Tools)
PharmGKB_search_variants (from Pharmgkb Tools)

PharmacoDBTool (8 tools)#

Local Tools:

PharmacoDB_get_biomarker_assoc (from Pharmacodb Tools)
PharmacoDB_get_cell_line (from Pharmacodb Tools)
PharmacoDB_get_compound (from Pharmacodb Tools)
PharmacoDB_get_drug_targets (from Pharmacodb Tools)
PharmacoDB_get_experiments (from Pharmacodb Tools)
PharmacoDB_get_molecular_profiling (from Pharmacodb Tools)
PharmacoDB_list_datasets (from Pharmacodb Tools)
PharmacoDB_search (from Pharmacodb Tools)

PharosTool (7 tools)#

Local Tools:

Pharos_get_disease_targets (from Pharos Tools)
Pharos_get_ligand_targets (from Pharos Tools)
Pharos_get_target (from Pharos Tools)
Pharos_get_target_expression (from Pharos Tools)
Pharos_get_target_ligands (from Pharos Tools)
Pharos_get_tdl_summary (from Pharos Tools)
Pharos_search_targets (from Pharos Tools)

PheWebPheWASTool (3 tools)#

Local Tools:

BioBankJapan_phewas_by_variant (from Pheweb Phewas Tools)
TPMI_phewas_by_variant (from Pheweb Phewas Tools)
UKBTOPMed_phewas_by_variant (from Pheweb Phewas Tools)

PhyKITTool (1 tools)#

Local Tools:

phykit_batch_analysis (from Phykit Tools)

PlantReactomeTool (5 tools)#

Local Tools:

PlantReactome_get_pathway (from Plant Reactome Tools)
PlantReactome_get_pathway_participants (from Plant Reactome Tools)
PlantReactome_get_species_pathway_tree (from Plant Reactome Tools)
PlantReactome_list_species (from Plant Reactome Tools)
PlantReactome_search_pathways (from Plant Reactome Tools)

PomBaseTool (6 tools)#

Local Tools:

PomBase_get_gene (from Pombase Tools)
PomBase_get_gene_phenotypes (from Pombase Tools)
PomBase_get_go_annotations (from Pombase Tools)
PomBase_get_interactions (from Pombase Tools)
PomBase_get_orthologs (from Pombase Tools)
PomBase_search_genes (from Pombase Tools)

PopGenTool (4 tools)#

Local Tools:

PopGen_fst (from Popgen Tools)
PopGen_haplotype_count (from Popgen Tools)
PopGen_hwe_test (from Popgen Tools)
PopGen_inbreeding (from Popgen Tools)

ProgenetixTool (6 tools)#

Local Tools:

Progenetix_cnv_search (from Progenetix Tools)
Progenetix_get_cnv_frequencies (from Progenetix Tools)
Progenetix_list_cohorts (from Progenetix Tools)
Progenetix_list_filtering_terms (from Progenetix Tools)
Progenetix_search_biosamples (from Progenetix Tools)
Progenetix_search_individuals (from Progenetix Tools)

ProtParamTool (1 tools)#

Local Tools:

ProtParam_calculate (from Protparam Tools)

ProtVarFunctionTool (1 tools)#

Local Tools:

ProtVar_get_function (from Protvar Tools)

ProtVarPopulationTool (1 tools)#

Local Tools:

ProtVar_get_population (from Protvar Tools)

ProtVarTool (1 tools)#

Local Tools:

ProtVar_map_variant (from Protvar Tools)

ProtacDBTool (3 tools)#

Local Tools:

ProtacDB_get_protac (from Protacdb Tools)
ProtacDB_search_protacs (from Protacdb Tools)
ProtacDB_search_targets (from Protacdb Tools)

ProteinStructure3DTool (1 tools)#

Local Tools:

visualize_protein_structure_3d (from Protein Structure 3D Tools)

ProteinsAPIRESTTool (10 tools)#

Local Tools:

proteins_api_get_comments (from Proteins Api Tools)
proteins_api_get_epitopes (from Proteins Api Tools)
proteins_api_get_features (from Proteins Api Tools)
proteins_api_get_genome_mappings (from Proteins Api Tools)
proteins_api_get_protein (from Proteins Api Tools)
proteins_api_get_proteomics (from Proteins Api Tools)
proteins_api_get_publications (from Proteins Api Tools)
proteins_api_get_variants (from Proteins Api Tools)
proteins_api_get_xrefs (from Proteins Api Tools)
proteins_api_search (from Proteins Api Tools)

ProteinsPlusRESTTool (6 tools)#

Local Tools:

ProteinsPlus_analyze_binding_site_similarity (from Proteinsplus Tools)
ProteinsPlus_generate_interaction_diagram (from Proteinsplus Tools)
ProteinsPlus_predict_binding_sites (from Proteinsplus Tools)
ProteinsPlus_predict_binding_sites_v3 (from Proteinsplus Tools)
ProteinsPlus_profile_structure_quality (from Proteinsplus Tools)
ProteinsPlus_protonate_structure (from Proteinsplus Tools)

ProteomeXchangeTool (3 tools)#

Local Tools:

ProteomeXchange_get_dataset (from Proteomexchange Tools)
ProteomeXchange_get_spectrum_by_usi (from Proteomexchange Tools)
ProteomeXchange_search_datasets (from Proteomexchange Tools)

ProteomicsDBGetProteinMeltomeTool (1 tools)#

Local Tools:

ProteomicsDB_get_protein_meltome (from Proteomicsdb Meltome Tools)

ProteomicsDBTool (5 tools)#

Local Tools:

ProteomicsDB_get_expression_summary (from Proteomicsdb Tools)
ProteomicsDB_get_peptides_for_protein (from Proteomicsdb Tools)
ProteomicsDB_get_protein_expression (from Proteomicsdb Tools)
ProteomicsDB_list_tissues (from Proteomicsdb Tools)
ProteomicsDB_search_proteins (from Proteomicsdb Tools)

PubChemBioAssayTool (4 tools)#

Local Tools:

PubChemBioAssay_get_assay (from Pubchem Bioassay Tools)
PubChemBioAssay_get_assay_summary (from Pubchem Bioassay Tools)
PubChemBioAssay_get_concise_activity_table (from Pubchem Bioassay Tools)
PubChemBioAssay_search_by_gene (from Pubchem Bioassay Tools)

PubChemRESTTool (21 tools)#

Local Tools:

PubChem_get_CID_by_SMILES (from Pubchem Tools)
PubChem_get_CID_by_compound_name (from Pubchem Tools)
PubChem_get_assay_active_compounds (from Pubchem Tools)
PubChem_get_assay_description (from Pubchem Tools)
PubChem_get_assay_dose_response (from Pubchem Tools)
PubChem_get_assay_summary (from Pubchem Tools)
PubChem_get_assay_targets (from Pubchem Tools)
PubChem_get_assays_for_compound_active (from Pubchem Tools)
PubChem_get_associated_patents_by_CID (from Pubchem Tools)
PubChem_get_compound_2D_image_by_CID (from Pubchem Tools)
PubChem_get_compound_bioactivity (from Pubchem Tools)
PubChem_get_compound_properties_by_CID (from Pubchem Tools)
PubChem_get_compound_synonyms_by_CID (from Pubchem Tools)
PubChem_get_compound_xrefs_by_CID (from Pubchem Tools)
PubChem_get_substance_by_SID (from Pubchem Tools)
PubChem_get_substances_by_source (from Pubchem Tools)
PubChem_list_substance_sources (from Pubchem Tools)
PubChem_search_assays_by_target_gene (from Pubchem Tools)
PubChem_search_assays_by_type (from Pubchem Tools)
PubChem_search_compounds_by_similarity (from Pubchem Tools)
PubChem_search_compounds_by_substructure (from Pubchem Tools)

PubChemToxTool (8 tools)#

Local Tools:

PubChemTox_get_acute_effects (from Pubchem Tox Tools)
PubChemTox_get_carcinogen_classification (from Pubchem Tox Tools)
PubChemTox_get_ecotoxicity_values (from Pubchem Tox Tools)
PubChemTox_get_ghs_classification (from Pubchem Tox Tools)
PubChemTox_get_human_toxicity_values (from Pubchem Tox Tools)
PubChemTox_get_target_organs (from Pubchem Tox Tools)
PubChemTox_get_toxicity_summary (from Pubchem Tox Tools)
PubChemTox_get_toxicity_values (from Pubchem Tox Tools)

PubMedGuidelinesTool (1 tools)#

Local Tools:

PubMed_Guidelines_Search (from Unified Guideline Tools)

PubMedRESTTool (5 tools)#

Local Tools:

PubMed_get_article (from Pubmed Tools)
PubMed_get_cited_by (from Pubmed Tools)
PubMed_get_links (from Pubmed Tools)
PubMed_get_related (from Pubmed Tools)
PubMed_search_articles (from Pubmed Tools)

PubTatorTool (2 tools)#

Local Tools:

PubTator3_EntityAutocomplete (from Pubtator Tools)
PubTator3_LiteratureSearch (from Pubtator Tools)

PyPIPackageInspector (1 tools)#

Local Tools:

PyPIPackageInspector (from Pypi Package Inspector Tools)

PythonCodeExecutor (1 tools)#

Local Tools:

python_code_executor (from Python Executor Tools)

PythonScriptRunner (1 tools)#

Local Tools:

python_script_runner (from Python Executor Tools)

QuickGOTool (4 tools)#

Local Tools:

QuickGO_annotations_by_gene (from Quickgo Tools)
QuickGO_annotations_by_goterm (from Quickgo Tools)
QuickGO_get_term_children (from Quickgo Tools)
QuickGO_get_term_detail (from Quickgo Tools)

RCSBAdvancedSearchTool (2 tools)#

Local Tools:

RCSBAdvSearch_search_by_motif (from Rcsb Advanced Search Tools)
RCSBAdvSearch_search_structures (from Rcsb Advanced Search Tools)

RCSBDataTool (3 tools)#

Local Tools:

RCSBData_get_assembly (from Rcsb Data Tools)
RCSBData_get_entry (from Rcsb Data Tools)
RCSBData_get_nonpolymer_entity (from Rcsb Data Tools)

RCSBGraphQLTool (3 tools)#

Local Tools:

RCSBGraphQL_get_ligand_info (from Rcsb Graphql Tools)
RCSBGraphQL_get_polymer_entity (from Rcsb Graphql Tools)
RCSBGraphQL_get_structure_summary (from Rcsb Graphql Tools)

RCSBSearchTool (1 tools)#

Local Tools:

PDB_search_similar_structures (from Rcsb Search Tools)

RCSBTool (39 tools)#

Local Tools:

get_assembly_info_by_pdb_id (from Rcsb Pdb Tools)
get_assembly_summary (from Rcsb Pdb Tools)
get_binding_affinity_by_pdb_id (from Rcsb Pdb Tools)
get_chem_comp_audit_info (from Rcsb Pdb Tools)
get_chem_comp_charge_and_ambiguity (from Rcsb Pdb Tools)
get_citation_info_by_pdb_id (from Rcsb Pdb Tools)
get_core_refinement_statistics (from Rcsb Pdb Tools)
get_crystal_growth_conditions_by_pdb_id (from Rcsb Pdb Tools)
get_crystallization_ph_by_pdb_id (from Rcsb Pdb Tools)
get_crystallographic_properties_by_pdb_id (from Rcsb Pdb Tools)
get_ec_number_by_entity_id (from Rcsb Pdb Tools)
get_em_3d_fitting_and_reconstruction_details (from Rcsb Pdb Tools)
get_emdb_ids_by_pdb_id (from Rcsb Pdb Tools)
get_gene_name_by_entity_id (from Rcsb Pdb Tools)
get_host_organism_by_pdb_id (from Rcsb Pdb Tools)
get_ligand_bond_count_by_pdb_id (from Rcsb Pdb Tools)
get_ligand_smiles_by_chem_comp_id (from Rcsb Pdb Tools)
get_mutation_annotations_by_pdb_id (from Rcsb Pdb Tools)
get_oligosaccharide_descriptors_by_entity_id (from Rcsb Pdb Tools)
get_polymer_entity_annotations (from Rcsb Pdb Tools)
get_polymer_entity_count_by_pdb_id (from Rcsb Pdb Tools)
get_polymer_entity_ids_by_pdb_id (from Rcsb Pdb Tools)
get_polymer_entity_type_by_entity_id (from Rcsb Pdb Tools)
get_polymer_molecular_weight_by_entity_id (from Rcsb Pdb Tools)
get_protein_classification_by_pdb_id (from Rcsb Pdb Tools)
get_protein_metadata_by_pdb_id (from Rcsb Pdb Tools)
get_refinement_resolution_by_pdb_id (from Rcsb Pdb Tools)
get_release_deposit_dates_by_pdb_id (from Rcsb Pdb Tools)
get_sequence_by_pdb_id (from Rcsb Pdb Tools)
get_sequence_lengths_by_pdb_id (from Rcsb Pdb Tools)
get_sequence_positional_features_by_instance_id (from Rcsb Pdb Tools)
get_source_organism_by_pdb_id (from Rcsb Pdb Tools)
get_space_group_by_pdb_id (from Rcsb Pdb Tools)
get_structure_determination_software_by_pdb_id (from Rcsb Pdb Tools)
get_structure_title_by_pdb_id (from Rcsb Pdb Tools)
get_structure_validation_metrics_by_pdb_id (from Rcsb Pdb Tools)
get_target_cofactor_info (from Rcsb Pdb Tools)
get_taxonomy_by_pdb_id (from Rcsb Pdb Tools)
get_uniprot_accession_by_entity_id (from Rcsb Pdb Tools)

RDKitCheminfoTool (2 tools)#

Local Tools:

RDKit_matched_molecular_pair (from Rdkit Cheminfo Tools)
RDKit_pharmacophore_features (from Rdkit Cheminfo Tools)

RGDStrainTool (3 tools)#

Local Tools:

RGD_get_strain (from Rgd Strain Tools)
RGD_get_strain_annotations (from Rgd Strain Tools)
RGD_search_strains (from Rgd Strain Tools)

RGDTool (6 tools)#

Local Tools:

RGD_get_annotations (from Rgd Tools)
RGD_get_gene (from Rgd Tools)
RGD_get_orthologs (from Rgd Tools)
RGD_get_qtls_in_region (from Rgd Tools)
RGD_resolve_symbol_or_region (from Rgd Tools)
RGD_search_genes (from Rgd Tools)

RNAcentralGenomeTool (2 tools)#

Local Tools:

RNAcentral_get_genome_locations (from Rnacentral Genome Tools)
RNAcentral_get_sequence (from Rnacentral Genome Tools)

RNAcentralGetTool (3 tools)#

Local Tools:

RNAcentral_get_by_accession (from Rnacentral Tools)
RNAcentral_get_region_ncRNAs (from Rnacentral Tools)
RNAcentral_get_xrefs_and_pubs (from Rnacentral Tools)

RNAcentralSearchTool (1 tools)#

Local Tools:

RNAcentral_search (from Rnacentral Tools)

ROCAnalysisTool (1 tools)#

Local Tools:

ROC_analysis (from Roc Analysis Tools)

RXNChemistryTool (2 tools)#

Local Tools:

RXNChemistry_predict_reaction (from Rxn Chemistry Tools)
RXNChemistry_predict_retrosynthesis (from Rxn Chemistry Tools)

Re3DataTool (2 tools)#

Local Tools:

re3data_get_repository (from Re3Data Tools)
re3data_search_repositories (from Re3Data Tools)

ReMapRESTTool (2 tools)#

Local Tools:

ReMap_get_peaks_in_region (from Remap Tools)
ReMap_get_transcription_factor_binding (from Remap Tools)

ReactomeAnalysisTool (7 tools)#

Local Tools:

ReactomeAnalysis_expression_analysis (from Reactome Analysis Tools)
ReactomeAnalysis_not_found_identifiers (from Reactome Analysis Tools)
ReactomeAnalysis_pathway_enrichment (from Reactome Analysis Tools)
ReactomeAnalysis_pathway_found_entities (from Reactome Analysis Tools)
ReactomeAnalysis_species_comparison (from Reactome Analysis Tools)
ReactomeAnalysis_species_comparison_v2 (from Reactome Analysis Tools)
ReactomeAnalysis_token_result (from Reactome Analysis Tools)

ReactomeContentTool (3 tools)#

Local Tools:

ReactomeContent_get_contained_events (from Reactome Content Tools)
ReactomeContent_get_enhanced_pathway (from Reactome Content Tools)
ReactomeContent_search (from Reactome Content Tools)

ReactomeInteractorsTool (3 tools)#

Local Tools:

ReactomeInteractors_get_entity_pathways (from Reactome Interactors Tools)
ReactomeInteractors_get_protein_interactors (from Reactome Interactors Tools)
ReactomeInteractors_search_entity (from Reactome Interactors Tools)

ReactomeRESTTool (20 tools)#

Local Tools:

Reactome_get_complex (from Reactome Tools)
Reactome_get_database_version (from Reactome Tools)
Reactome_get_diseases (from Reactome Tools)
Reactome_get_entity_compartment (from Reactome Tools)
Reactome_get_entity_events (from Reactome Tools)
Reactome_get_event_ancestors (from Reactome Tools)
Reactome_get_events_hierarchy (from Reactome Tools)
Reactome_get_interactor (from Reactome Tools)
Reactome_get_participant_reference_entities (from Reactome Tools)
Reactome_get_participants (from Reactome Tools)
Reactome_get_pathway (from Reactome Tools)
Reactome_get_pathway_hierarchy (from Reactome Tools)
Reactome_get_pathway_reactions (from Reactome Tools)
Reactome_get_pathways_low_entity (from Reactome Tools)
Reactome_get_reaction (from Reactome Tools)
Reactome_list_species (from Reactome Tools)
Reactome_list_top_pathways (from Reactome Tools)
Reactome_map_uniprot_to_pathways (from Reactome Tools)
Reactome_map_uniprot_to_reactions (from Reactome Tools)
Reactome_query_by_ids (from Reactome Tools)

RegulomeDBRESTTool (1 tools)#

Local Tools:

RegulomeDB_query_variant (from Regulomedb Tools)

RemoteTool (41 tools)#

Remote Tools:

boltz2_docking (from Boltz Tools)
compute_depmap24q2_gene_correlations (from Depmap Tools)
consult_human_expert (from Expert Feedback Tools)
get_abstract_from_patent_app_number (from Uspto Downloader Tools)
get_claims_from_patent_app_number (from Uspto Downloader Tools)
get_expert_response (from Expert Feedback Tools)
get_expert_status (from Expert Feedback Tools)
get_full_text_from_patent_app_number (from Uspto Downloader Tools)
list_pending_expert_requests (from Expert Feedback Tools)
mcp_auto_loader_human_expert (from Expert Feedback Tools)
run_borzoi_predict (from Borzoi Tools)
run_borzoi_variant_effect (from Borzoi Tools)
run_cell2location_deconvolution (from Cell2Location Tools)
run_cellrank_fate (from Cellrank Tools)
run_celltypist_annotate (from Celltypist Tools)
run_chrombpnet_predict (from Chrombpnet Tools)
run_chrombpnet_variant_effect (from Chrombpnet Tools)
run_compass_prediction (from Immune Compass Tools)
run_enformer_predict (from Enformer Tools)
run_enformer_variant_effect (from Enformer Tools)
run_harmony_integrate (from Harmony Tools)
run_ldsc_genetic_correlation (from Ldsc Tools)
run_ldsc_heritability (from Ldsc Tools)
run_liana_cellphonedb (from Liana Tools)
run_macs3_callpeak (from Macs3 Tools)
run_milo_differential_abundance (from Milo Tools)
run_mofa_factors (from Mofa Tools)
run_monocle3_pseudotime (from Monocle3 Tools)
run_paga_trajectory (from Paga Tools)
run_pinnacle_ppi_retrieval (from Pinnacle Tools)
run_scanvi_annotate (from Scanvi Tools)
run_scrublet_doublets (from Scrublet Tools)
run_scvelo_velocity (from Scvelo Tools)
run_scvi_differential_expression (from Scvi Tools)
run_scvi_integration (from Scvi Tools)
run_singler_annotate (from Singler Tools)
run_slingshot_trajectory (from Slingshot Tools)
run_squidpy_nhood_enrichment (from Squidpy Tools)
run_tangram_deconvolution (from Tangram Tools)
run_transcriptformer_embedding_retrieval (from Transcriptformer Tools)
submit_expert_response (from Expert Feedback Tools)

ReplicateTool (2 tools)#

Local Tools:

Replicate_get_prediction (from Replicate Tools)
Replicate_run_prediction (from Replicate Tools)

RetractionCheckTool (1 tools)#

Local Tools:

Crossref_check_retraction (from Retraction Tools)

RfamTool (9 tools)#

Local Tools:

Rfam_accession_to_id (from Rfam Tools)
Rfam_get_alignment (from Rfam Tools)
Rfam_get_covariance_model (from Rfam Tools)
Rfam_get_family (from Rfam Tools)
Rfam_get_sequence_regions (from Rfam Tools)
Rfam_get_structure_mapping (from Rfam Tools)
Rfam_get_tree_data (from Rfam Tools)
Rfam_id_to_accession (from Rfam Tools)
Rfam_search_sequence (from Rfam Tools)

RheaReactionTool (2 tools)#

Local Tools:

Rhea_get_reaction (from Rhea Reaction Tools)
Rhea_get_reaction_participants (from Rhea Reaction Tools)

RheaTool (3 tools)#

Local Tools:

Rhea_search_by_chebi (from Rhea Tools)
Rhea_search_by_ec (from Rhea Tools)
Rhea_search_reactions (from Rhea Tools)

RxClassTool (5 tools)#

Local Tools:

RxClass_find_classes (from Rxclass Tools)
RxClass_get_class_hierarchy (from Rxclass Tools)
RxClass_get_class_members (from Rxclass Tools)
RxClass_get_disease_relations (from Rxclass Tools)
RxClass_get_drug_classes (from Rxclass Tools)

RxNormExtendedTool (5 tools)#

Local Tools:

RxNorm_find_rxcui (from Rxnorm Extended Tools)
RxNorm_get_drug_info (from Rxnorm Extended Tools)
RxNorm_get_ndc_properties (from Rxnorm Extended Tools)
RxNorm_get_ndc_status_history (from Rxnorm Extended Tools)
RxNorm_get_related_drugs (from Rxnorm Extended Tools)

RxNormTool (1 tools)#

Local Tools:

RxNorm_get_drug_names (from Rxnorm Tools)

SABIORKTool (1 tools)#

Local Tools:

SABIO_RK_search_reactions (from Sabiork Tools)

SASBDBRESTTool (4 tools)#

Local Tools:

SASBDB_get_entries_by_tag (from Sasbdb Tools)
SASBDB_get_entries_by_uniprot (from Sasbdb Tools)
SASBDB_get_entry (from Sasbdb Tools)
SASBDB_list_instruments (from Sasbdb Tools)

SASBDBSearchTool (1 tools)#

Local Tools:

SASBDB_search_entries (from Sasbdb Tools)

SASBDBTextSearchTool (1 tools)#

Local Tools:

SASBDB_search (from Sasbdb Tools)

SAbDabTool (4 tools)#

Local Tools:

SAbDab_get_structure (from Sabdab Tools)
SAbDab_get_structure_summary (from Sabdab Tools)
SAbDab_get_summary (from Sabdab Tools)
SAbDab_search_structures (from Sabdab Tools)

SCExpressionAtlasTool (3 tools)#

Local Tools:

SCXA_get_cluster_marker_genes (from Scxa Tools)
SCXA_list_experiments (from Scxa Tools)
SCXA_search_gene (from Scxa Tools)

SCREENRESTTool (1 tools)#

Local Tools:

SCREEN_get_regulatory_elements (from Screen Tools)

SGDProteinTool (3 tools)#

Local Tools:

SGD_get_literature (from Sgd Protein Tools)
SGD_get_protein_domains (from Sgd Protein Tools)
SGD_get_ptm_sites (from Sgd Protein Tools)

SGDTool (8 tools)#

Local Tools:

SGD_get_disease_annotations (from Sgd Tools)
SGD_get_gene (from Sgd Tools)
SGD_get_go_annotations (from Sgd Tools)
SGD_get_interactions (from Sgd Tools)
SGD_get_phenotypes (from Sgd Tools)
SGD_get_regulation (from Sgd Tools)
SGD_get_sequence (from Sgd Tools)
SGD_search (from Sgd Tools)

SIGNListGuidelinesTool (1 tools)#

Local Tools:

SIGN_list_guidelines (from Unified Guideline Tools)

SIGNORTool (4 tools)#

Local Tools:

SIGNOR_connect_proteins (from Signor Tools)
SIGNOR_get_interactions (from Signor Tools)
SIGNOR_get_pathway (from Signor Tools)
SIGNOR_list_pathways (from Signor Tools)

SIGNSearchGuidelinesTool (1 tools)#

Local Tools:

SIGN_search_guidelines (from Unified Guideline Tools)

SIMBADAdvancedTool (1 tools)#

Local Tools:

SIMBAD_advanced_query (from Simbad Tools)

SIMBADTool (1 tools)#

Local Tools:

SIMBAD_query_object (from Simbad Tools)

SMILESVerifyTool (1 tools)#

Local Tools:

SMILES_verify (from Smiles Verify Tools)

SPrediXcanTool (1 tools)#

Local Tools:

SPrediXcan_associate (from Spredixcan Tools)

SRATool (2 tools)#

Local Tools:

SRA_get_experiment (from Sra Tools)
SRA_search_experiments (from Sra Tools)

SSGSEATool (1 tools)#

Local Tools:

ssGSEA_score (from Ssgsea Tools)

STITCHTool (3 tools)#

Local Tools:

STITCH_get_chemical_protein_interactions (from Stitch Tools)
STITCH_get_interaction_partners (from Stitch Tools)
STITCH_resolve_identifier (from Stitch Tools)

STRINGExtTool (2 tools)#

Local Tools:

STRING_get_enrichment (from String Ext Tools)
STRING_get_functional_annotations (from String Ext Tools)

STRINGRESTTool (4 tools)#

Local Tools:

STRING_functional_enrichment (from Ppi Tools)
STRING_get_protein_interactions (from Ppi Tools)
STRING_map_identifiers (from Ppi Tools)
STRING_ppi_enrichment (from Ppi Tools)

SYNERGxDBTool (8 tools)#

Local Tools:

SYNERGxDB_get_biomarker_association (from Synergxdb Tools)
SYNERGxDB_get_combo_matrix (from Synergxdb Tools)
SYNERGxDB_get_combo_stats (from Synergxdb Tools)
SYNERGxDB_get_drug (from Synergxdb Tools)
SYNERGxDB_list_cell_lines (from Synergxdb Tools)
SYNERGxDB_list_datasets (from Synergxdb Tools)
SYNERGxDB_list_drugs (from Synergxdb Tools)
SYNERGxDB_search_combos (from Synergxdb Tools)

ScientificCalculatorTool (5 tools)#

Local Tools:

DNA_translate_reading_frames (from Scientific Calculator Tools)
EnzymeKinetics_calculate (from Scientific Calculator Tools)
EquilibriumSolver_calculate (from Scientific Calculator Tools)
MolecularFormula_analyze (from Scientific Calculator Tools)
Statistics_test (from Scientific Calculator Tools)

ScreenCcreTool (2 tools)#

Local Tools:

SCREEN_get_cCRE_by_accession (from Screen Ccre Tools)
SCREEN_search_cCREs_by_region (from Screen Ccre Tools)

SearchSPLTool (1 tools)#

Local Tools:

DailyMed_search_spls (from Dailymed Tools)

SemanticScholarPDFSnippetsTool (1 tools)#

Local Tools:

SemanticScholar_get_pdf_snippets (from Semantic Scholar Tools)

SemanticScholarTool (1 tools)#

Local Tools:

SemanticScholar_search_papers (from Semantic Scholar Tools)

SequenceAnalyzeTool (4 tools)#

Local Tools:

Sequence_count_residues (from Sequence Analyze Tools)
Sequence_gc_content (from Sequence Analyze Tools)
Sequence_reverse_complement (from Sequence Analyze Tools)
Sequence_stats (from Sequence Analyze Tools)

SiderTool (5 tools)#

Local Tools:

SIDER_get_drug_indications (from Sider Tools)
SIDER_get_drug_side_effects (from Sider Tools)
SIDER_get_drugs_for_side_effect (from Sider Tools)
SIDER_search_drug (from Sider Tools)
SIDER_search_side_effect (from Sider Tools)

SmolAgentTool (2 tools)#

Local Tools:

advanced_literature_search_agent (from Smolagent Tools)
open_deep_research_agent (from Smolagent Tools)

SpecialTool (2 tools)#

Local Tools:

CallAgent (from Special Tools)
Finish (from Special Tools)

SpliceAITool (3 tools)#

Local Tools:

SpliceAI_get_max_delta (from Spliceai Tools)
SpliceAI_predict_pangolin (from Spliceai Tools)
SpliceAI_predict_splice (from Spliceai Tools)

StructureAnnotationTool (1 tools)#

Local Tools:

Structure_annotate_per_residue (from Structure Annotation Tools)

SurvivalTool (3 tools)#

Local Tools:

Survival_cox_regression (from Survival Tools)
Survival_kaplan_meier (from Survival Tools)
Survival_log_rank_test (from Survival Tools)

SwissADMETool (2 tools)#

Local Tools:

SwissADME_calculate_adme (from Swissadme Tools)
SwissADME_check_druglikeness (from Swissadme Tools)

SwissDockTool (3 tools)#

Local Tools:

SwissDock_check_job_status (from Swissdock Tools)
SwissDock_dock_ligand (from Swissdock Tools)
SwissDock_retrieve_results (from Swissdock Tools)

SwissLipidsTool (3 tools)#

Local Tools:

SwissLipids_get_children (from Swisslipids Tools)
SwissLipids_get_lipid (from Swisslipids Tools)
SwissLipids_search (from Swisslipids Tools)

SwissModelTool (4 tools)#

Local Tools:

SwissModel_download_pdb (from Swissmodel Tools)
SwissModel_get_models (from Swissmodel Tools)
SwissModel_get_models_batch (from Swissmodel Tools)
SwissModel_get_summary (from Swissmodel Tools)

SwissTargetTool (2 tools)#

Local Tools:

SwissTargetPrediction_organisms (from Swiss Target Tools)
SwissTargetPrediction_predict (from Swiss Target Tools)

SynBioHubTool (3 tools)#

Local Tools:

SynBioHub_get_collections (from Synbiohub Tools)
SynBioHub_get_part (from Synbiohub Tools)
SynBioHub_search_parts (from Synbiohub Tools)

T3DBTool (2 tools)#

Local Tools:

T3DB_get_toxin (from T3Db Tools)
T3DB_search_toxins (from T3Db Tools)

TCDBTool (3 tools)#

Local Tools:

TCDB_get_transporter (from Tcdb Tools)
TCDB_search_by_substrate (from Tcdb Tools)
TCDB_search_family (from Tcdb Tools)

TDCDatasetTool (2 tools)#

Local Tools:

TDC_list_datasets (from Tdc Dataset Tools)
TDC_load_dataset (from Tdc Dataset Tools)

TDCOracleTool (1 tools)#

Local Tools:

TDC_predict_oracle_score (from Tdc Oracle Tools)

TIMERTool (3 tools)#

Local Tools:

TIMER2_gene_correlation (from Timer Tools)
TIMER2_immune_estimation (from Timer Tools)
TIMER2_survival_association (from Timer Tools)

TRIPDatabaseTool (1 tools)#

Local Tools:

TRIP_Database_Guidelines_Search (from Unified Guideline Tools)

TarkManeTranscriptsTool (1 tools)#

Local Tools:

Tark_get_mane_transcripts (from Tark Tools)

TarkTranscriptTool (1 tools)#

Local Tools:

Tark_get_transcript (from Tark Tools)

TextDownloadTool (1 tools)#

Local Tools:

download_text_content (from File Download Tools)

TheraSAbDabTool (4 tools)#

Local Tools:

TheraSAbDab_get_all_therapeutics (from Therasabdab Tools)
TheraSAbDab_get_therapeutic_sequences (from Therasabdab Tools)
TheraSAbDab_search_by_target (from Therasabdab Tools)
TheraSAbDab_search_therapeutics (from Therasabdab Tools)

ThreeDBeaconsTool (3 tools)#

Local Tools:

ThreeDBeacons_get_annotations (from Three D Beacons Tools)
ThreeDBeacons_get_structure_summary (from Three D Beacons Tools)
ThreeDBeacons_get_structures (from Three D Beacons Tools)

TogoIDConvertTool (1 tools)#

Local Tools:

TogoID_convert (from Togoid Tools)

TogoIDDatasetsTool (1 tools)#

Local Tools:

TogoID_list_datasets (from Togoid Tools)

ToolFinderEmbedding (2 tools)#

Local Tools:

Tool_Finder (from Finder Tools)
Tool_RAG (from Finder Tools)

ToolFinderKeyword (1 tools)#

Local Tools:

Tool_Finder_Keyword (from Finder Tools)

ToolFinderLLM (1 tools)#

Local Tools:

Tool_Finder_LLM (from Finder Tools)

ToolUniversePageTool (1 tools)#

Local Tools:

get_tool_page_url (from Tooluniverse Page Tools)

TumorHope2SearchPeptidesTool (1 tools)#

Local Tools:

TumorHope2_search_peptides (from Tumorhope2 Tools)

UCSCEpigenomicsTool (3 tools)#

Local Tools:

UCSC_get_cpg_islands (from Epigenomics Tools)
UCSC_get_encode_cCREs (from Epigenomics Tools)
UCSC_get_tf_binding_clusters (from Epigenomics Tools)

UCSCGenomeTool (4 tools)#

Local Tools:

UCSC_get_sequence (from Ucsc Genome Tools)
UCSC_get_track (from Ucsc Genome Tools)
UCSC_list_tracks (from Ucsc Genome Tools)
UCSC_search (from Ucsc Genome Tools)

UMLSRESTTool (5 tools)#

Local Tools:

icd_search_codes (from Umls Tools)
loinc_search_codes (from Umls Tools)
snomed_search_concepts (from Umls Tools)
umls_get_concept_details (from Umls Tools)
umls_search_concepts (from Umls Tools)

URLHTMLTagTool (1 tools)#

Local Tools:

get_webpage_title (from Url Fetch Tools)

URLToPDFTextTool (1 tools)#

Local Tools:

get_webpage_text_from_url (from Url Fetch Tools)

USDAPlantsCharacteristicsTool (1 tools)#

Local Tools:

USDA_plants_get_characteristics (from Usda Plants Tools)

USDAPlantsProfileTool (5 tools)#

Local Tools:

USDA_plants_get_invasive_status (from Usda Plants Tools)
USDA_plants_get_profile (from Usda Plants Tools)
USDA_plants_get_wetland_status (from Usda Plants Tools)
USDA_plants_get_wildlife_value (from Usda Plants Tools)
USDA_plants_search_by_name (from Usda Plants Tools)

USPTOOpenDataPortalTool (6 tools)#

Local Tools:

get_associated_documents_metadata (from Uspto Tools)
get_patent_application_metadata (from Uspto Tools)
get_patent_continuity_data (from Uspto Tools)
get_patent_foreign_priority_data (from Uspto Tools)
get_patent_overview_by_text_query (from Uspto Tools)
get_patent_term_adjustment_data (from Uspto Tools)

UniBindRESTTool (3 tools)#

Local Tools:

UniBind_get_dataset (from Unibind Tools)
UniBind_list_tfs (from Unibind Tools)
UniBind_search_datasets (from Unibind Tools)

UniChemTool (3 tools)#

Local Tools:

UniChem_connectivity_search (from Unichem Tools)
UniChem_list_sources (from Unichem Tools)
UniChem_search_compound (from Unichem Tools)

UniParcTool (2 tools)#

Local Tools:

UniParc_get_entry (from Uniparc Tools)
UniParc_search (from Uniparc Tools)

UniProtIDMappingTool (4 tools)#

Local Tools:

UniProtIDMap_convert_ids (from Uniprot Idmapping Tools)
UniProtIDMap_gene_to_uniprot (from Uniprot Idmapping Tools)
UniProtIDMap_list_databases (from Uniprot Idmapping Tools)
UniProtIDMap_to_pdb (from Uniprot Idmapping Tools)

UniProtLocationsTool (2 tools)#

Local Tools:

UniProtLocations_get_location (from Uniprot Locations Tools)
UniProtLocations_search (from Uniprot Locations Tools)

UniProtRESTTool (18 tools)#

Local Tools:

UniProt_get_alternative_names_by_accession (from Uniprot Tools)
UniProt_get_disease_variants_by_accession (from Uniprot Tools)
UniProt_get_entry_by_accession (from Uniprot Tools)
UniProt_get_features_by_accession (from Uniprot Tools)
UniProt_get_function_by_accession (from Uniprot Tools)
UniProt_get_isoform_ids_by_accession (from Uniprot Tools)
UniProt_get_organism_by_accession (from Uniprot Tools)
UniProt_get_proteome (from Uniprot Tools)
UniProt_get_ptm_processing_by_accession (from Uniprot Tools)
UniProt_get_recommended_name_by_accession (from Uniprot Tools)
UniProt_get_sequence_by_accession (from Uniprot Tools)
UniProt_get_subcellular_location_by_accession (from Uniprot Tools)
UniProt_get_uniparc_entry (from Uniprot Tools)
UniProt_get_uniref_cluster (from Uniprot Tools)
UniProt_id_mapping (from Uniprot Tools)
UniProt_search (from Uniprot Tools)
UniProt_search_uniparc (from Uniprot Tools)
UniProt_search_uniref (from Uniprot Tools)

UniProtRefTool (6 tools)#

Local Tools:

UniProtRef_get_disease (from Uniprot Ref Tools)
UniProtRef_get_keyword (from Uniprot Ref Tools)
UniProtRef_get_proteome (from Uniprot Ref Tools)
UniProtRef_search_diseases (from Uniprot Ref Tools)
UniProtRef_search_keywords (from Uniprot Ref Tools)
UniProtRef_search_proteomes (from Uniprot Ref Tools)

UniProtTaxonomyTool (2 tools)#

Local Tools:

UniProtTaxonomy_get_taxon (from Uniprot Taxonomy Tools)
UniProtTaxonomy_search (from Uniprot Taxonomy Tools)

UniRefTool (2 tools)#

Local Tools:

UniRef_get_cluster (from Uniref Tools)
UniRef_search_clusters (from Uniref Tools)

UnpaywallTool (2 tools)#

Local Tools:

Unpaywall_check_oa_status (from Unpaywall Tools)
Unpaywall_get_full_text_url (from Unpaywall Tools)

UsageTipsTool (1 tools)#

Local Tools:

ToolUniverse_get_usage_tips (from Special Tools)

VCFStatsTool (3 tools)#

Local Tools:

VCF_count_variants (from Vcf Stats Tools)
VCF_normalize (from Vcf Stats Tools)
VCF_summary_stats (from Vcf Stats Tools)

VDJDBTool (3 tools)#

Local Tools:

VDJDB_get_antigen_specificity (from Vdjdb Tools)
VDJDB_get_database_summary (from Vdjdb Tools)
VDJDB_search_cdr3 (from Vdjdb Tools)

VEPPathogenicityTool (1 tools)#

Local Tools:

VEP_predict_pathogenicity (from Vep Pathogenicity Tools)

VEuPathDBTool (2 tools)#

Local Tools:

VEuPathDB_get_gene_record (from Veupathdb Tools)
VEuPathDB_search_genes_by_organism (from Veupathdb Tools)

WFGYPromptBundleTool (1 tools)#

Local Tools:

WFGY_triage_llm_rag_failure (from Wfgy Promptbundle Tools)

WHOGuidelineFullTextTool (1 tools)#

Local Tools:

WHO_Guideline_Full_Text (from Unified Guideline Tools)

WHOGuidelinesTool (1 tools)#

Local Tools:

WHO_Guidelines_Search (from Unified Guideline Tools)

WebAPIDocumentationSearchTool (1 tools)#

Local Tools:

web_api_documentation_search (from Web Search Tools)

WebSearchTool (1 tools)#

Local Tools:

web_search (from Web Search Tools)

WikiPathwaysExtTool (3 tools)#

Local Tools:

WikiPathways_find_pathways_by_gene (from Wikipathways Ext Tools)
WikiPathways_get_pathway_genes (from Wikipathways Ext Tools)
WikiPathways_get_pathway_metabolites (from Wikipathways Ext Tools)

WikiPathwaysGetTool (1 tools)#

Local Tools:

WikiPathways_get_pathway (from Wikipathways Tools)

WikiPathwaysSearchTool (1 tools)#

Local Tools:

WikiPathways_search (from Wikipathways Tools)

WikidataSPARQLTool (1 tools)#

Local Tools:

Wikidata_SPARQL_query (from Wikidata Sparql Tools)

WikipediaContentTool (1 tools)#

Local Tools:

Wikipedia_get_content (from Wikipedia Tools)

WikipediaSearchTool (1 tools)#

Local Tools:

Wikipedia_search (from Wikipedia Tools)

WikipediaSummaryTool (1 tools)#

Local Tools:

Wikipedia_get_summary (from Wikipedia Tools)

WoRMSRESTTool (5 tools)#

Local Tools:

WoRMS_get_classification (from Worms Tools)
WoRMS_get_distribution (from Worms Tools)
WoRMS_get_synonyms (from Worms Tools)
WoRMS_get_vernaculars (from Worms Tools)
WoRMS_search_species (from Worms Tools)

WormBaseTool (6 tools)#

Local Tools:

WormBase_get_expression (from Wormbase Tools)
WormBase_get_gene (from Wormbase Tools)
WormBase_get_human_diseases (from Wormbase Tools)
WormBase_get_interactions (from Wormbase Tools)
WormBase_get_orthologs (from Wormbase Tools)
WormBase_get_phenotypes (from Wormbase Tools)

XMLTool (19 tools)#

Local Tools:

drugbank_filter_drugs_by_name (from Xml Tools)
drugbank_get_drug_basic_info_by_drug_name_or_id (from Xml Tools)
drugbank_get_drug_chemistry_by_drug_name_or_drugbank_id (from Xml Tools)
drugbank_get_drug_desc_pharmacology_by_moa (from Xml Tools)
drugbank_get_drug_interactions_by_drug_name_or_id (from Xml Tools)
drugbank_get_drug_name_and_description_by_indication (from Xml Tools)
drugbank_get_drug_name_and_description_by_pathway_name (from Xml Tools)
drugbank_get_drug_name_and_description_by_target_name (from Xml Tools)
drugbank_get_drug_products_by_name_or_drugbank_id (from Xml Tools)
drugbank_get_drug_references_by_drug_name_or_id (from Xml Tools)
drugbank_get_indications_by_drug_name_or_drugbank_id (from Xml Tools)
drugbank_get_pathways_reactions_by_drug_or_id (from Xml Tools)
drugbank_get_pharmacology_by_drug_name_or_drugbank_id (from Xml Tools)
drugbank_get_safety_by_drug_name_or_drugbank_id (from Xml Tools)
drugbank_get_targets_by_drug_name_or_drugbank_id (from Xml Tools)
mesh_get_subjects_by_pharmacological_action (from Xml Tools)
mesh_get_subjects_by_subject_id (from Xml Tools)
mesh_get_subjects_by_subject_name (from Xml Tools)
mesh_get_subjects_by_subject_scope_or_definition (from Xml Tools)

XenbaseTool (2 tools)#

Local Tools:

Xenbase_get_gene (from Xenbase Tools)
Xenbase_search_genes (from Xenbase Tools)

ZenodoRESTTool (5 tools)#

Local Tools:

Zenodo_get_license (from Zenodo Tools)
Zenodo_get_record (from Zenodo Tools)
Zenodo_get_record_files (from Zenodo Tools)
Zenodo_list_licenses (from Zenodo Tools)
Zenodo_search_records (from Zenodo Tools)

ZincTool (5 tools)#

Local Tools:

ZINC_get_compound (from Zinc Tools)
ZINC_get_purchasable (from Zinc Tools)
ZINC_search_by_properties (from Zinc Tools)
ZINC_search_by_smiles (from Zinc Tools)
ZINC_search_compounds (from Zinc Tools)

ZoomaTool (2 tools)#

Local Tools:

ZOOMA_annotate_text (from Zooma Tools)
ZOOMA_list_datasources (from Zooma Tools)

api_key (1 tools)#

Local Tools:

ALPHA_GENOME_API_KEY (from Api Keys Catalog)

dbSNPGetFrequencies (1 tools)#

Local Tools:

dbsnp_get_frequencies (from Dbsnp Tools)

dbSNPGetVariantByRsID (1 tools)#

Local Tools:

dbsnp_get_variant_by_rsid (from Dbsnp Tools)

dbSNPSearchByGene (1 tools)#

Local Tools:

dbsnp_search_by_gene (from Dbsnp Tools)

endpoint (5 tools)#

Local Tools:

BOLTZ_MCP_SERVER_HOST (from Api Keys Catalog)
ESM_MCP_SERVER_HOST (from Api Keys Catalog)
EXPERT_FEEDBACK_MCP_SERVER_URL (from Api Keys Catalog)
TXAGENT_MCP_SERVER_HOST (from Api Keys Catalog)
USPTO_MCP_SERVER_HOST (from Api Keys Catalog)

gnomADGetGeneConstraints (1 tools)#

Local Tools:

gnomad_get_gene_constraints (from Gnomad Tools)

gnomADGetVariantPopulations (1 tools)#

Local Tools:

gnomad_get_variant_populations (from Gnomad Tools)

gnomADGraphQLQueryTool (9 tools)#

Local Tools:

gnomad_get_gene (from Gnomad Tools)
gnomad_get_region (from Gnomad Tools)
gnomad_get_sv_by_gene (from Gnomad Tools)
gnomad_get_sv_by_region (from Gnomad Tools)
gnomad_get_sv_detail (from Gnomad Tools)
gnomad_get_transcript (from Gnomad Tools)
gnomad_get_variant (from Gnomad Tools)
gnomad_search_genes (from Gnomad Tools)
gnomad_search_variants (from Gnomad Tools)

iDigBioRecordTool (1 tools)#

Local Tools:

iDigBio_get_record (from Idigbio Tools)

iDigBioSearchTool (3 tools)#

Local Tools:

iDigBio_search_media (from Idigbio Tools)
iDigBio_search_records (from Idigbio Tools)
iDigBio_summary_facets (from Idigbio Tools)

iPTMnetTool (5 tools)#

Local Tools:

iPTMnet_get_proteoform_ppi (from Iptmnet Tools)
iPTMnet_get_proteoforms (from Iptmnet Tools)
iPTMnet_get_ptm_ppi (from Iptmnet Tools)
iPTMnet_get_ptm_sites (from Iptmnet Tools)
iPTMnet_search (from Iptmnet Tools)

miRNAGetTool (6 tools)#

Local Tools:

LNCipedia_get_lncrna (from Lncrna Tools)
LNCipedia_get_lncrna_publications (from Lncrna Tools)
LNCipedia_get_lncrna_xrefs (from Lncrna Tools)
miRBase_get_mirna (from Mirna Tools)
miRBase_get_mirna_publications (from Mirna Tools)
miRBase_get_mirna_xrefs (from Mirna Tools)

miRNASearchTool (3 tools)#

Local Tools:

LNCipedia_search_lncrna (from Lncrna Tools)
LNCipedia_search_ncrna_by_type (from Lncrna Tools)
miRBase_search_mirna (from Mirna Tools)

secret (39 tools)#

Local Tools:

ADDGENE_API_KEY (from Api Keys Catalog)
AZURE_OPENAI_API_KEY (from Api Keys Catalog)
BGPT_API_KEY (from Api Keys Catalog)
BIOCYC_EMAIL (from Api Keys Catalog)
BIOCYC_PASSWORD (from Api Keys Catalog)
BIOGRID_ACCESS_KEY (from Api Keys Catalog)
BRENDA_EMAIL (from Api Keys Catalog)
BRENDA_PASSWORD (from Api Keys Catalog)
CELLXGENE_CENSUS_PACKAGE_INSTALLED (from Api Keys Catalog)
CENSUS_API_KEY (from Api Keys Catalog)
CLUE_API_KEY (from Api Keys Catalog)
CLUSPRO_API_SECRET (from Api Keys Catalog)
CLUSPRO_USERNAME (from Api Keys Catalog)
DISGENET_API_KEY (from Api Keys Catalog)
ESM_API_KEY (from Api Keys Catalog)
FDA_API_KEY (from Api Keys Catalog)
FDC_API_KEY (from Api Keys Catalog)
GEMINI_API_KEY (from Api Keys Catalog)
HF_TOKEN (from Api Keys Catalog)
ICD_CLIENT_ID (from Api Keys Catalog)
ICD_CLIENT_SECRET (from Api Keys Catalog)
IUCN_API_KEY (from Api Keys Catalog)
LDLINK_TOKEN (from Api Keys Catalog)
MCULE_API_KEY (from Api Keys Catalog)
NCBI_API_KEY (from Api Keys Catalog)
NVIDIA_API_KEY (from Api Keys Catalog)
OMIM_API_KEY (from Api Keys Catalog)
ONCOKB_API_TOKEN (from Api Keys Catalog)
OPENAI_API_KEY (from Api Keys Catalog)
OPENALEX_API_KEY (from Api Keys Catalog)
OPENGWAS_JWT (from Api Keys Catalog)
OPENROUTER_API_KEY (from Api Keys Catalog)
PHARMVAR_API_KEY (from Api Keys Catalog)
REPLICATE_API_TOKEN (from Api Keys Catalog)
RXN4CHEMISTRY_API_KEY (from Api Keys Catalog)
SEMANTIC_SCHOLAR_API_KEY (from Api Keys Catalog)
UMLS_API_KEY (from Api Keys Catalog)
USPTO_API_KEY (from Api Keys Catalog)
WAQI_API_KEY (from Api Keys Catalog)

Quick Tool Search#

Use your browser’s search function (Ctrl+F / Cmd+F) to quickly find:

Tool Name: Search for the exact tool name
File Path: Search for filename.json to find all tools in that file
Tool Type: Search for specific tool types like “AgenticTool”, “OpenTarget”, etc.

Note

Each configuration file has its own dedicated page with detailed tool information and collapsible sections.

Available Tools#

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Local Tools#

Remote Tools#

Overview#

Local Tools#

Broken_Apis Tools#

Packages Tools#

Builtin Tools#

Remote Tools#

Tools by Type#

ADAStandardsTool (3 tools)#

ADMETAITool (9 tools)#

AHAACCGuidelineTool (4 tools)#

AMPSphereGetAmpDistributionsTool (1 tools)#

AMPSphereGetAmpFeaturesTool (1 tools)#

AMPSphereGetAmpTool (1 tools)#

AMPSphereGetFamilyTool (1 tools)#

AMPSphereSearchAmpsTool (1 tools)#

AMPSphereSequenceMatchTool (1 tools)#

AOPWikiDetailTool (2 tools)#

AOPWikiListTool (1 tools)#

APPRISTool (3 tools)#

ARCHS4Tool (2 tools)#

AddgeneTool (3 tools)#

AgenticTool (50 tools)#

AgingCohortSearchTool (1 tools)#

AllenBrainTool (5 tools)#

AllenCellTypesSpecimensTool (1 tools)#

AllianceGenomeTool (24 tools)#

AlphaFillTransplantsTool (1 tools)#

AlphaFoldRESTTool (3 tools)#

AlphaGenomeTool (2 tools)#

AlphaMissenseTool (3 tools)#

AntibodyRegistryTool (2 tools)#

ArXivPDFSnippetsTool (1 tools)#

ArXivTool (1 tools)#

ArrayExpressRESTTool (4 tools)#

BGPTPaperEvidenceTool (1 tools)#

BRENDATool (5 tools)#

BVBRCTool (13 tools)#

BaseRESTTool (277 tools)#

BgeeTool (3 tools)#

BiGGModelsTool (8 tools)#

BinaryDownloadTool (1 tools)#

BindingDBTool (5 tools)#

BioGRIDRESTTool (4 tools)#

BioImageArchiveTool (4 tools)#

BioModelsRESTTool (6 tools)#

BioPortalTool (4 tools)#

BioRxivTool (2 tools)#

BioSamplesTool (5 tools)#

BioStudiesRESTTool (4 tools)#

BioregistryTool (4 tools)#

BridgeDbTool (3 tools)#

CADDTool (3 tools)#

CATHTool (4 tools)#

CBioPortalRESTTool (14 tools)#

CDCRESTTool (3 tools)#

CELLxGENECensusTool (7 tools)#

CIViCTool (12 tools)#

CMAGuidelinesTool (1 tools)#

CODTool (2 tools)#

COSMICTool (2 tools)#

CPICGetRecommendationsTool (1 tools)#

CPICListGuidelinesTool (1 tools)#

CPICSearchPairsTool (2 tools)#

CTDTool (5 tools)#

CTFPHCListGuidelinesTool (1 tools)#

CTFPHCSearchGuidelinesTool (1 tools)#

CTISGetTrialTool (1 tools)#

CTISSearchTrialsTool (2 tools)#

CancerPPD2SearchPeptidesTool (1 tools)#

CancerPrognosisTool (4 tools)#

CancerVarTool (1 tools)#

CellMarkerTool (4 tools)#

CellPaintingTool (3 tools)#

CellosaurusGetCellLineInfoTool (1 tools)#

CellosaurusQueryConverterTool (1 tools)#

CellosaurusSearchTool (1 tools)#