Immune Compass Tools#

Configuration File: remote_tools/immune_compass_tools.json Tool Type: Remote Tools Count: 1

This page contains all tools defined in the immune_compass_tools.json configuration file.

Available Tools#

run_compass_prediction (Type: RemoteTool)#

Predict immune-checkpoint-inhibitor response with the official COMPASS architecture and a digest-…

run_compass_prediction tool specification

Tool Information:

  • Name: run_compass_prediction

  • Type: RemoteTool

  • Description: Predict immune-checkpoint-inhibitor response with the official COMPASS architecture and a digest-pinned provider artifact stored as safetensors plus data-only preprocessing arrays.

Parameters:

  • gene_expression_data_path (string) (required) One-sample CSV or TSV inside the provider data directory, with Index and cancer_code columns followed by all 15,672 model TPM genes.

  • threshold (number) (optional) Probability threshold for responder classification (0.0-1.0). Values ≥ threshold classify sample as likely responder. Default 0.5 provides balanced sensitivity/specificity. Consider lower thresholds (~0.3) for higher sensitivity.

Example Usage:

query = {
    "name": "run_compass_prediction",
    "arguments": {
        "gene_expression_data_path": "example_value"
    }
}
result = tu.run(query)