Celltypist Tools#

Configuration File: remote_tools/celltypist_tools.json Tool Type: Remote Tools Count: 1

This page contains all tools defined in the celltypist_tools.json configuration file.

Available Tools#

run_celltypist_annotate (Type: RemoteTool)#

Annotate single-cell expression with CellTypist using a provider-converted data-only model archiv…

run_celltypist_annotate tool specification

Tool Information:

  • Name: run_celltypist_annotate

  • Type: RemoteTool

  • Description: Annotate single-cell expression with CellTypist using a provider-converted data-only model archive. The live service never downloads or deserializes upstream pickle files.

Parameters:

  • adata_path (string) (required) An .h5ad file inside the provider data directory containing log1p-normalized expression to 10,000 counts per cell.

  • model (string) (optional) Provider-approved CellTypist model identity; the server maps it to a safe .npz archive.

  • majority_voting (boolean) (optional) Refine predictions by CellTypist over-clustering when the dataset has more than 50 cells.

Example Usage:

query = {
    "name": "run_celltypist_annotate",
    "arguments": {
        "adata_path": "example_value"
    }
}
result = tu.run(query)