Rfdiffusion3 Tools#

Configuration File: remote_tools/rfdiffusion3_tools.json Tool Type: Remote Tools Count: 1

This page contains all tools defined in the rfdiffusion3_tools.json configuration file.

Available Tools#

rfdiffusion3_design (Type: RemoteTool)#

Design protein backbones with RFdiffusion3. Either give a ‘length’ to build an unconditional back…

rfdiffusion3_design tool specification

Tool Information:

  • Name: rfdiffusion3_design

  • Type: RemoteTool

  • Description: Design protein backbones with RFdiffusion3. Either give a ‘length’ to build an unconditional backbone of that size, or a ‘contigs’ string with an ‘input_pdb’ to scaffold a motif out of an existing structure. Returns per-design metrics; the mmCIF text itself is opt-in.

Parameters:

  • length (string) (optional) Backbone length for unconditional design: ‘60’, or a sampled range ‘60-100’. Maximum 400.

  • contigs (string) (optional) Motif-scaffolding contig string, e.g. ‘10-40/A163-181/10-40’. Requires input_pdb.

  • input_pdb (string) (optional) Path to the input structure the contigs refer to. Required with ‘contigs’, and must be readable by the provider.

  • n_designs (integer) (optional) How many backbones to sample (default 1, max 8).

  • seed (integer) (optional) Random seed; the same seed reproduces the designs.

  • return_structures (boolean) (optional) Return the mmCIF text of every backbone (default false: megabytes).

Example Usage:

query = {
    "name": "rfdiffusion3_design",
    "arguments": {
    }
}
result = tu.run(query)