Esmfold2 Tools#

Configuration File: remote_tools/esmfold2_tools.json Tool Type: Remote Tools Count: 1

This page contains all tools defined in the esmfold2_tools.json configuration file.

Available Tools#

esmfold2_fold (Type: RemoteTool)#

Predict a protein (or protein complex) structure with ESMFold2 directly from sequence – no MSA a…

esmfold2_fold tool specification

Tool Information:

  • Name: esmfold2_fold

  • Type: RemoteTool

  • Description: Predict a protein (or protein complex) structure with ESMFold2 directly from sequence – no MSA and no template search. Give one chain for a monomer or several for a complex. Returns pTM/ipTM per sampled structure; the mmCIF text itself is opt-in.

Parameters:

  • chains (array) (required) Protein chains of one complex. Each item is either a bare sequence string or an object with ‘sequence’ and an optional ‘id’.

  • seed (integer) (optional) Random seed; the same seed reproduces the fold.

  • num_diffusion_samples (integer) (optional) Structures to sample (default 1). Each is scored separately, so >1 is how to compare conformations.

  • return_structures (boolean) (optional) Return the mmCIF text as well as the scores (default false: megabytes).

Example Usage:

query = {
    "name": "esmfold2_fold",
    "arguments": {
        "chains": ["item1", "item2"]
    }
}
result = tu.run(query)