Remote Tools Setup

This section aggregates setup guides for all integrations under src/tooluniverse/remote.

• AlphaFold 2 initial-guess (binder interface) remote tool
• AlphaFold 3 (JAX fork) remote tool
• AlphaFold 3 (PyTorch port) remote tool
• AlphaProtein Novo (apnovo)
• AtlasFold remote tool
• BioEmu-2 as a ToolUniverse remote tool
• Boltz2 Tool Setup
• BoltzGen remote tool
• Borzoi Remote Tool (MCP Server)
• Borzoi (calico release) variant-scoring remote tool
• Carbon-A Remote Tool
• cell2location Remote Tool (MCP Server)
• CellRank Remote Tool (MCP Server)
• CellTypist Remote Tool (MCP Server)
• Chai-1 remote tool
• ChromBPNet Remote Tool (MCP Server)
• ColabDesign (BindCraft) remote tool
• ColabFold (AlphaFold2-Multimer) remote tool
• Proteina-Complexa binder-design remote tool
• DepMap Gene Correlation Analysis Tool - MCP Server
• E1 variant-effect remote tool
• EF2Inv binder-design remote tool
• Enformer Remote Tool (MCP Server)
• Enformer (official DeepMind release) remote tool
• ESM Cambrian (ESMC) Protein Embedding Tool
• ESM-IF1 inverse-folding remote tool
• ESM C embedding remote tool
• ESMFold 2 remote tool
• Evo 2 remote tool
• Human Expert Feedback System
• Genie 3 remote tool
• GPN-Star variant-effect remote tool
• Harmony Remote Tool (MCP Server)
• COMPASS immune-response remote tool
• LDSC Remote Tool (MCP Server)
• LIANA Remote Tool (MCP Server)
• MACS3 Remote Tool (MCP Server)
• Milo Remote Tool (MCP Server)
• MOFA+ Remote Tool (MCP Server)
• Monocle3 Remote Tool (MCP Server)
• Mosaic gradient binder-design remote tool
• OpenDDE remote tool
• OpenFold3 remote tool
• OpenFold3 (OpenBind-0) remote tool
• PAGA Remote Tool (MCP Server)
• PINNACLE Protein-Protein Interaction Tool
• ProGen2 remote tool
• ProteinMPNN remote tool
• Protenix v1 remote tool
• RFD4-Proteina
• RFdiffusion2 Remote Tool
• RFdiffusion3 remote tool
• RoseTTAFold3 remote tool
• scANVI Remote Tool (MCP Server)
• Scrublet Remote Tool (MCP Server)
• scVelo Remote Tool (MCP Server)
• scVI Remote Tool (MCP Server)
• SingleR Remote Tool (MCP Server)
• Slingshot Remote Tool (MCP Server)
• Squidpy Remote Tool (MCP Server)
• Tangram Remote Tool (MCP Server)
• Transcriptformer Gene Embedding Tool
• USPTO Downloader Tool Setup