Regulomedb Tools#

Configuration File: regulomedb_tools.json Tool Type: Local Tools Count: 1

This page contains all tools defined in the regulomedb_tools.json configuration file.

Available Tools#

RegulomeDB_query_variant (Type: RegulomeDBRESTTool)#

Query RegulomeDB for regulatory variant annotations using rsID. Nearby SNPs are independently pag…

RegulomeDB_query_variant tool specification

Tool Information:

  • Name: RegulomeDB_query_variant

  • Type: RegulomeDBRESTTool

  • Description: Query RegulomeDB for regulatory variant annotations using rsID. Nearby SNPs are independently paginated: use nearby_snp_offset and nearby_snp_limit, and follow next_nearby_snp_offset until it is null.

Parameters:

  • rsid (string) (optional) dbSNP rsID (e.g., ‘rs4994’, ‘rs429358’)

  • variant (string) (optional) Alias for rsid. dbSNP rsID (e.g., ‘rs7903146’, ‘rs429358’).

  • nearby_snp_offset (integer) (optional) Zero-based offset into the nearby SNP list (default 0).

  • nearby_snp_limit (integer) (optional) Maximum nearby SNPs to return (default 10, max 500).

Example Usage:

query = {
    "name": "RegulomeDB_query_variant",
    "arguments": {
    }
}
result = tu.run(query)