Ebi Proteins Features Tools#

Configuration File: ebi_proteins_features_tools.json Tool Type: Local Tools Count: 3

This page contains all tools defined in the ebi_proteins_features_tools.json configuration file.

Available Tools#

EBIProteins_get_domains_sites (Type: EBIProteinsFeaturesTool)#

Get and page through domain/site features for a protein from the EBI Proteins API. Returns true c…

EBIProteins_get_domains_sites tool specification

Tool Information:

  • Name: EBIProteins_get_domains_sites

  • Type: EBIProteinsFeaturesTool

  • Description: Get and page through domain/site features for a protein from the EBI Proteins API. Returns true counts and continuation metadata and preserves every evidence record (plus its original payload), rather than silently limiting each feature to three evidence links.

Parameters:

  • accession (string) (required) UniProt accession. Examples: ‘P04637’ (TP53/p53), ‘P00533’ (EGFR), ‘P01308’ (Insulin), ‘P31749’ (AKT1).

  • limit (integer) (optional) Maximum features to return on this page.

  • offset (integer) (optional) Zero-based offset into category features.

Example Usage:

query = {
    "name": "EBIProteins_get_domains_sites",
    "arguments": {
        "accession": "example_value"
    }
}
result = tu.run(query)

EBIProteins_get_molecule_processing (Type: EBIProteinsFeaturesTool)#

Get and page through molecule-processing features for a protein from the EBI Proteins API. Return…

EBIProteins_get_molecule_processing tool specification

Tool Information:

  • Name: EBIProteins_get_molecule_processing

  • Type: EBIProteinsFeaturesTool

  • Description: Get and page through molecule-processing features for a protein from the EBI Proteins API. Returns true counts, continuation metadata, and every evidence record for signal peptides, chains, propeptides, transit peptides, and related processing annotations.

Parameters:

  • accession (string) (required) UniProt accession. Examples: ‘P01308’ (Insulin - classic example), ‘P01375’ (TNF-alpha), ‘P01189’ (POMC - multiple peptides), ‘P06213’ (Insulin receptor).

  • limit (integer) (optional) Maximum features to return on this page.

  • offset (integer) (optional) Zero-based offset into category features.

Example Usage:

query = {
    "name": "EBIProteins_get_molecule_processing",
    "arguments": {
        "accession": "example_value"
    }
}
result = tu.run(query)

EBIProteins_get_structural_features (Type: EBIProteinsFeaturesTool)#

Get and page through secondary-structure annotations for a protein from the EBI Proteins API. Ret…

EBIProteins_get_structural_features tool specification

Tool Information:

  • Name: EBIProteins_get_structural_features

  • Type: EBIProteinsFeaturesTool

  • Description: Get and page through secondary-structure annotations for a protein from the EBI Proteins API. Returns true counts and continuation metadata plus complete evidence for helices, beta strands, and turns; feature-rich proteins do not silently stop at 100.

Parameters:

  • accession (string) (required) UniProt accession. Examples: ‘P04637’ (TP53/p53), ‘P69905’ (Hemoglobin alpha), ‘P00533’ (EGFR), ‘P38398’ (BRCA1).

  • limit (integer) (optional) Maximum features to return on this page.

  • offset (integer) (optional) Zero-based offset into category features.

Example Usage:

query = {
    "name": "EBIProteins_get_structural_features",
    "arguments": {
        "accession": "example_value"
    }
}
result = tu.run(query)