Complex Portal Tools#

Configuration File: complex_portal_tools.json Tool Type: Local Tools Count: 2

This page contains all tools defined in the complex_portal_tools.json configuration file.

Available Tools#

ComplexPortal_get_complex (Type: ComplexPortalTool)#

Get detailed information for a specific protein complex by Complex Portal ID (e.g., CPX-1234). Re…

ComplexPortal_get_complex tool specification

Tool Information:

  • Name: ComplexPortal_get_complex

  • Type: ComplexPortalTool

  • Description: Get detailed information for a specific protein complex by Complex Portal ID (e.g., CPX-1234). Returns full subunit composition with stoichiometry, function description, disease associations, GO annotations, and cross-references to PDB/Reactome.

Parameters:

  • complex_id (string) (required) Complex Portal accession ID (e.g., ‘CPX-1’, ‘CPX-6512’)

Example Usage:

query = {
    "name": "ComplexPortal_get_complex",
    "arguments": {
        "complex_id": "example_value"
    }
}
result = tu.run(query)

ComplexPortal_search_complexes (Type: ComplexPortalTool)#

Search for curated protein complexes by gene/protein name from the EBI Complex Portal (includes C…

ComplexPortal_search_complexes tool specification

Tool Information:

  • Name: ComplexPortal_search_complexes

  • Type: ComplexPortalTool

  • Description: Search for curated protein complexes by gene/protein name from the EBI Complex Portal (includes CORUM mammalian complexes). Returns complete complex descriptions, description_length, subunit compositions, and explicit offset pagination. When has_more is true, pass next_first as first in the next call to retrieve the following page.

Parameters:

  • query (string) (required) Gene symbol, protein name, or complex name to search (e.g., ‘WDR7’, ‘RAVE complex’, ‘proteasome’)

  • species (string) (optional) NCBI taxonomy ID or common species name to filter by species (default: ‘9606’ for human). Common IDs/names are mapped to Complex Portal’s organism index, e.g. ‘10090’ or ‘mouse’ for Mus musculus, ‘10116’ or ‘rat’ for Rattus norvegicus, ‘yeast’ for Saccharomyces cerevisiae; pass ‘’ for all species.

  • number (integer) (optional) Complexes requested for this page (default 25, reliable upstream maximum 500). Values above 500 trigger anomalous upstream over-returning and are rejected rather than silently changed.

  • first (integer) (optional) Zero-based result offset. Omit for the first page; use next_first from the preceding response for later pages.

Example Usage:

query = {
    "name": "ComplexPortal_search_complexes",
    "arguments": {
        "query": "example_value"
    }
}
result = tu.run(query)