Ebi Proteins Interactions Tools#

Configuration File: ebi_proteins_interactions_tools.json Tool Type: Local Tools Count: 2

This page contains all tools defined in the ebi_proteins_interactions_tools.json configuration file.

Available Tools#

EBIProteins_get_interaction_details (Type: EBIProteinsInteractionsTool)#

Get protein metadata, disease associations, subcellular locations, and a paginated experiment-cou…

EBIProteins_get_interaction_details tool specification

Tool Information:

  • Name: EBIProteins_get_interaction_details

  • Type: EBIProteinsInteractionsTool

  • Description: Get protein metadata, disease associations, subcellular locations, and a paginated experiment-count-sorted interaction list from the EBI Proteins API. Use limit/offset and inspect total_interactions, interactions_truncated, and next_offset to retrieve every partner.

Parameters:

  • accession (string) (required) UniProt accession of the query protein. Examples: ‘P04637’ (TP53), ‘P00533’ (EGFR).

  • limit (integer) (optional) Interaction partners returned per page (default 50, maximum 500).

  • offset (integer) (optional) Zero-based offset in the experiment-count-sorted interaction list.

Example Usage:

query = {
    "name": "EBIProteins_get_interaction_details",
    "arguments": {
        "accession": "example_value"
    }
}
result = tu.run(query)

EBIProteins_get_interactions (Type: EBIProteinsInteractionsTool)#

Get experimentally supported protein interaction partners from the EBI Proteins API/IntAct, sorte…

EBIProteins_get_interactions tool specification

Tool Information:

  • Name: EBIProteins_get_interactions

  • Type: EBIProteinsInteractionsTool

  • Description: Get experimentally supported protein interaction partners from the EBI Proteins API/IntAct, sorted by supporting experiment count. Use limit and offset to page through all partners; inspect total_interactions, interactions_truncated, and next_offset. TP53 currently has well over 100 distinct partners.

Parameters:

  • accession (string) (required) UniProt accession of the query protein. Examples: ‘P04637’ (TP53), ‘P00533’ (EGFR), ‘P38398’ (BRCA1), ‘P01308’ (insulin).

  • limit (integer) (optional) Interaction partners returned per page (default 50, maximum 500).

  • offset (integer) (optional) Zero-based offset in the experiment-count-sorted interaction list.

Example Usage:

query = {
    "name": "EBIProteins_get_interactions",
    "arguments": {
        "accession": "example_value"
    }
}
result = tu.run(query)