Alphafill Tools#

Configuration File: alphafill_tools.json Tool Type: Local Tools Count: 1

This page contains all tools defined in the alphafill_tools.json configuration file.

Available Tools#

AlphaFill_get_transplants (Type: AlphaFillTransplantsTool)#

Get ligands, cofactors, and ions transplanted into an AlphaFold model by AlphaFill. Source PDB ID…

AlphaFill_get_transplants tool specification

Tool Information:

  • Name: AlphaFill_get_transplants

  • Type: AlphaFillTransplantsTool

  • Description: Get ligands, cofactors, and ions transplanted into an AlphaFold model by AlphaFill. Source PDB IDs within every compound are independently paginated. Inspect source_pdb_ids_total, source_pdb_ids_truncated, and next_source_pdb_offset so structural provenance is complete.

Parameters:

  • uniprot (string) (required) UniProt accession, e.g. ‘P00520’ (ABL1), ‘P00533’ (EGFR), ‘P24941’ (CDK2).

  • source_pdb_offset (integer) (optional) Zero-based source-PDB offset applied within every compound.

  • source_pdb_limit (integer) (optional) Source PDB IDs returned per compound (default 10, maximum 500).

Example Usage:

query = {
    "name": "AlphaFill_get_transplants",
    "arguments": {
        "uniprot": "example_value"
    }
}
result = tu.run(query)