Togoid Tools#

Configuration File: togoid_tools.json Tool Type: Local Tools Count: 2

This page contains all tools defined in the togoid_tools.json configuration file.

Available Tools#

TogoID_convert (Type: TogoIDConvertTool)#

Convert up to 50 biological identifiers between directly related TogoID datasets. Unlike TogoID’s…

TogoID_convert tool specification

Tool Information:

  • Name: TogoID_convert

  • Type: TogoIDConvertTool

  • Description: Convert up to 50 biological identifiers between directly related TogoID datasets. Unlike TogoID’s flattened multi-ID response, this wrapper performs identity-verified per-input conversion and returns complete input-to-output mappings, explicit unmapped IDs, association counts, and a compatibility union of unique targets. Unrelated dataset pairs return a no-route error. Call TogoID_list_datasets for current names.

Parameters:

  • ids (string) (required) One to 50 unique source identifiers, comma-separated, in the source dataset’s native format.

  • source (string) (required) Source TogoID dataset name, e.g. ‘ensembl_gene’, ‘ncbigene’, ‘uniprot’, ‘pubchem_compound’, ‘hgnc’.

  • target (string) (required) Target TogoID dataset name, e.g. ‘uniprot’, ‘hgnc’, ‘chebi’, ‘pdb’, ‘ensembl_transcript’.

Example Usage:

query = {
    "name": "TogoID_convert",
    "arguments": {
        "ids": "example_value",
        "source": "example_value",
        "target": "example_value"
    }
}
result = tu.run(query)

TogoID_list_datasets (Type: TogoIDDatasetsTool)#

List the current TogoID identifier datasets and preserve each complete upstream configuration rec…

TogoID_list_datasets tool specification

Tool Information:

  • Name: TogoID_list_datasets

  • Type: TogoIDDatasetsTool

  • Description: List the current TogoID identifier datasets and preserve each complete upstream configuration record, including label, category, catalog, validation regex, annotations, examples, and URI prefixes. Optionally filter by an exact case-insensitive category; unknown categories return an explicit error with valid choices.

Parameters:

  • category (string) (optional) Optional category filter, e.g. ‘Gene’, ‘Protein’, ‘Compound’, ‘Disease’, ‘Pathway’, ‘Variant’.

Example Usage:

query = {
    "name": "TogoID_list_datasets",
    "arguments": {
    }
}
result = tu.run(query)