Nasa Osdr Tools#

Configuration File: nasa_osdr_tools.json Tool Type: Local Tools Count: 3

This page contains all tools defined in the nasa_osdr_tools.json configuration file.

Available Tools#

OSDR_get_study (Type: NASAOSDRTool)#

Retrieve full metadata for one NASA OSDR space biology study: title, description, organism, space…

OSDR_get_study tool specification

Tool Information:

  • Name: OSDR_get_study

  • Type: NASAOSDRTool

  • Description: Retrieve full metadata for one NASA OSDR space biology study: title, description, organism, spaceflight mission, experimental factors, assay type, and publication details. Example: study_id=’OSD-1’ (Drosophila immune response aboard the Space Shuttle). Use OSDR_search_studies to find a study_id.

Parameters:

  • study_id (string) (required) OSDR study accession, e.g. ‘OSD-1’ or ‘1’.

Example Usage:

query = {
    "name": "OSDR_get_study",
    "arguments": {
        "study_id": "example_value"
    }
}
result = tu.run(query)

OSDR_list_files (Type: NASAOSDRTool)#

List the downloadable data files for one NASA OSDR study: raw and processed files across assay ty…

OSDR_list_files tool specification

Tool Information:

  • Name: OSDR_list_files

  • Type: NASAOSDRTool

  • Description: List the downloadable data files for one NASA OSDR study: raw and processed files across assay types, with category, size, and download path. Example: study_id=’OSD-1’ returns 73 files including microarray differential expression tables. Use OSDR_search_studies to find a study_id.

Parameters:

  • study_id (string) (required) OSDR study accession, e.g. ‘OSD-1’ or ‘1’.

  • limit ([‘integer’, ‘null’]) (optional) Max files to return, 1-200. Default 50.

Example Usage:

query = {
    "name": "OSDR_list_files",
    "arguments": {
        "study_id": "example_value"
    }
}
result = tu.run(query)

OSDR_search_studies (Type: NASAOSDRTool)#

Full-text search NASA’s Open Science Data Repository (OSDR, formerly GeneLab): ~1,000 space biolo…

OSDR_search_studies tool specification

Tool Information:

  • Name: OSDR_search_studies

  • Type: NASAOSDRTool

  • Description: Full-text search NASA’s Open Science Data Repository (OSDR, formerly GeneLab): ~1,000 space biology studies on how spaceflight and microgravity affect organisms, across transcriptomics, proteomics, microscopy, and physiology assays. Optionally filter by organism. Example: query=’microgravity bone loss’, organism=’Mus musculus’. Results also include cross-referenced external datasets (e.g. GEO); only rows with usable_with_get_study true work with OSDR_get_study and OSDR_list_files.

Parameters:

  • query (string) (required) Free-text search, e.g. ‘microgravity bone loss’, ‘radiation Drosophila’.

  • organism ([‘string’, ‘null’]) (optional) Optional organism filter, e.g. ‘Mus musculus’, ‘Homo sapiens’, ‘Arabidopsis thaliana’.

  • limit ([‘integer’, ‘null’]) (optional) Max studies to return, 1-100. Default 25.

Example Usage:

query = {
    "name": "OSDR_search_studies",
    "arguments": {
        "query": "example_value"
    }
}
result = tu.run(query)