Clinvar Submitted Tools

Configuration File: clinvar_submitted_tools.json Tool Type: Local Tools Count: 1

This page contains all tools defined in the clinvar_submitted_tools.json configuration file.

Available Tools

ClinVar_get_submitted_records (Type: ClinVarSubmittedRecordsTool)

Retrieve the individual per-submitter assertions (SCV / ClinicalAssertion records) for a ClinVar …

ClinVar_get_submitted_records tool specification

Tool Information:

  • Name: ClinVar_get_submitted_records

  • Type: ClinVarSubmittedRecordsTool

  • Description: Retrieve the individual per-submitter assertions (SCV / ClinicalAssertion records) for a ClinVar variant. Unlike ClinVar_search_variants / ClinVar_get_variant_details / ClinVar_get_clinical_significance (which use esummary and return only the single AGGREGATE germline classification), this tool calls NCBI eutils efetch (rettype=vcv) and parses the full VariationArchive XML to expose every submitter’s own classification, review status, condition and last-evaluated date. Use this when you need to see who classified a variant and how (e.g. to inspect conflicting interpretations behind a ‘Conflicting classifications of pathogenicity’ aggregate). Keyless NCBI endpoint.

Parameters:

  • variant_id (string) (required) ClinVar variant identifier. Accepts a VCV accession (e.g. ‘VCV000013961’) OR a bare ClinVar variation id (e.g. ‘13961’); a numeric id is normalized to VCV%09d. Example: ‘VCV000013961’ (BRAF V600E).

Example Usage:

query = {
    "name": "ClinVar_get_submitted_records",
    "arguments": {
        "variant_id": "example_value"
    }
}
result = tu.run(query)