Antibody Registry Tools

Configuration File: antibody_registry_tools.json Tool Type: Local Tools Count: 2

This page contains all tools defined in the antibody_registry_tools.json configuration file.

Available Tools

AntibodyRegistry_get_by_rrid (Type: AntibodyRegistryTool)

Resolve a research-antibody RRID (e.g. ‘AB_2298772’, ‘RRID:AB_2298772’, or the bare numeric id) t…

AntibodyRegistry_get_by_rrid tool specification

Tool Information:

  • Name: AntibodyRegistry_get_by_rrid

  • Type: AntibodyRegistryTool

  • Description: Resolve a research-antibody RRID (e.g. ‘AB_2298772’, ‘RRID:AB_2298772’, or the bare numeric id) to its full Antibody Registry record: name, target (with UniProt/Entrez ids), clonality, clone id, host/source organism, conjugate, isotype, applications, vendor, catalog number, and defining citation. Use it to verify or expand an antibody cited by RRID in a methods section. To discover antibodies for a target, use AntibodyRegistry_search.

Parameters:

  • rrid (string) (required) Antibody RRID, e.g. ‘AB_2298772’, ‘RRID:AB_2298772’, or a bare numeric id like ‘2298772’.

Example Usage:

query = {
    "name": "AntibodyRegistry_get_by_rrid",
    "arguments": {
        "rrid": "example_value"
    }
}
result = tu.run(query)

AntibodyRegistry_search (Type: AntibodyRegistryTool)

Search the Antibody Registry (antibodyregistry.org, a SciCrunch/RRID resource of 3M+ research ant…

AntibodyRegistry_search tool specification

Tool Information:

  • Name: AntibodyRegistry_search

  • Type: AntibodyRegistryTool

  • Description: Search the Antibody Registry (antibodyregistry.org, a SciCrunch/RRID resource of 3M+ research antibodies) by target, name, or vendor keyword. Returns matching antibodies each with its persistent RRID (e.g. AB_2298772), target (and target UniProt/Entrez id), clonality, clone id, host/source organism, conjugate, applications, vendor, catalog number, and defining citation. Use it to find a validated antibody for a protein target or to obtain the RRID a journal requires for reproducibility. For resolving a known RRID, use AntibodyRegistry_get_by_rrid instead.

Parameters:

  • query (string) (required) Full-text search term: a target (e.g. ‘GFAP’, ‘CD3’), antibody name, vendor, or catalog number.

  • size (integer) (optional) Number of results to return (1-100, default 10).

  • page (integer) (optional) Result page, starting at 1 (default 1).

Example Usage:

query = {
    "name": "AntibodyRegistry_search",
    "arguments": {
        "query": "example_value"
    }
}
result = tu.run(query)