T3Db Tools

Configuration File: t3db_tools.json Tool Type: Local Tools Count: 2

This page contains all tools defined in the t3db_tools.json configuration file.

Available Tools

T3DB_get_toxin (Type: T3DBTool)

Get detailed toxin information from the Toxin and Toxin-Target Database (T3DB) by T3DB ID. Return…

T3DB_get_toxin tool specification

Tool Information:

  • Name: T3DB_get_toxin

  • Type: T3DBTool

  • Description: Get detailed toxin information from the Toxin and Toxin-Target Database (T3DB) by T3DB ID. Returns chemical properties (name, CAS, formula, molecular weight), mechanism of toxicity, health effects, route of exposure, and protein/gene targets with UniProt IDs. Covers 3,678 common toxins including pollutants, pesticides, drugs, and food toxins. Use for toxicology research, environmental health, and chemical safety assessment.

Parameters:

  • toxin_id (string) (required) T3DB toxin ID (e.g., ‘T3D0001’ for Arsenic, ‘T3D0002’ for Lead). Numeric-only input is auto-prefixed with T3D.

Example Usage:

query = {
    "name": "T3DB_get_toxin",
    "arguments": {
        "toxin_id": "example_value"
    }
}
result = tu.run(query)

T3DB_search_toxins (Type: T3DBTool)

Search for toxins by name or keyword in the T3DB (Toxin and Toxin-Target Database). Returns match…

T3DB_search_toxins tool specification

Tool Information:

  • Name: T3DB_search_toxins

  • Type: T3DBTool

  • Description: Search for toxins by name or keyword in the T3DB (Toxin and Toxin-Target Database). Returns matching toxin IDs and names. Use T3DB_get_toxin with the returned ID for detailed information. Covers pollutants, pesticides, drugs, food toxins, and environmental chemicals.

Parameters:

  • query (string) (required) Toxin name or keyword (e.g., ‘arsenic’, ‘lead’, ‘mercury’, ‘bisphenol’)

Example Usage:

query = {
    "name": "T3DB_search_toxins",
    "arguments": {
        "query": "example_value"
    }
}
result = tu.run(query)