Iedb Ext Tools¶

Configuration File: iedb_ext_tools.json Tool Type: Local Tools Count: 4

This page contains all tools defined in the iedb_ext_tools.json configuration file.

Available Tools¶

iedb_get_epitope_tcell_assays (Type: IEDBTool)¶

Get T-cell assay data linked to a specific epitope structure ID. Given an epitope_id (from iedb_s…

Useful for understanding the T-cell immunogenicity of a known epitope.

Parameters:

epitope_id (integer) (required) IEDB epitope structure ID (from iedb_search_epitopes results). Example: 20354 for GILGFVFTL.

limit (integer) (optional) Maximum rows to return.

offset (integer) (optional) Pagination offset.

select (unknown) (optional) Columns to return.

filters (object) (optional) Additional PostgREST filters.

Example Usage:
query = {
    "name": "iedb_get_epitope_tcell_assays",
    "arguments": {
        "epitope_id": 10
    }
}
result = tu.run(query)

iedb_search_bcr_sequences (Type: IEDBTool)¶

Search B-cell receptor (BCR) / antibody sequence data from the IEDB. Returns antibody sequences w…

Useful for antibody discovery, therapeutic antibody engineering, and studying humoral immune responses.

Parameters:

limit (integer) (optional) Maximum rows to return.

offset (integer) (optional) Pagination offset.

select (unknown) (optional) Columns to return.

filters (object) (optional) PostgREST filters. Key columns: receptor_group_id, receptor_type, receptor_name, chain_type, v_gene, j_gene.

Example Usage:
query = {
    "name": "iedb_search_bcr_sequences",
    "arguments": {
    }
}
result = tu.run(query)

iedb_search_tcell_assays (Type: IEDBTool)¶

Search T-cell assay data from the IEDB. Returns T-cell response assays with epitope sequences, MH…

Useful for finding T-cell epitopes for vaccine design, immunotherapy, and understanding cellular immunity. Filter by peptide sequence, MHC class, organism, or qualitative result.

Tip: use select to request only key fields for faster responses.

Parameters:

sequence (string) (optional) Exact peptide sequence to search (e.g., GILGFVFTL for influenza M1 epitope).

sequence_contains (string) (optional) Partial peptide sequence (substring match). Example: ‘SIINFEKL’.

mhc_class (string) (optional) MHC class restriction (I or II).

qualitative_measure (string) (optional) Filter by assay result.

limit (integer) (optional) Maximum rows to return.

offset (integer) (optional) Pagination offset.

select (unknown) (optional) Columns to return (array of strings). Example: [‘tcell_id’,’linear_sequence’,’mhc_restriction’,’qualitative_measure’].

filters (object) (optional) Advanced PostgREST filters (e.g., {“source_organism_iri”:”eq.NCBITaxon:11320”}).

Example Usage:
query = {
    "name": "iedb_search_tcell_assays",
    "arguments": {
    }
}
result = tu.run(query)

iedb_search_tcr_sequences (Type: IEDBTool)¶

Search T-cell receptor (TCR) sequence data from the IEDB. Returns TCR sequences paired with their…

Useful for TCR engineering, adoptive cell therapy design, and understanding antigen-specific T-cell responses.

Parameters:

limit (integer) (optional) Maximum rows to return.

offset (integer) (optional) Pagination offset.

select (unknown) (optional) Columns to return.

filters (object) (optional) PostgREST filters. Key columns: receptor_group_id, receptor_type, receptor_name, cdr3_alpha, cdr3_beta, chain_type, v_gene, j_gene.

Example Usage:
query = {
    "name": "iedb_search_tcr_sequences",
    "arguments": {
    }
}
result = tu.run(query)