May 2023: Congratulations to Ada and Michelle
Congrats to PhD student Michelle on being selected as the 2023 Albert J. Ryan Fellow and also to participate in the Heidelberg Laureate Forum. Congratulations to PhD student Ada for being selected as the Kempner Institute Graduate Fellow!
Apr 2023: Universal Domain Adaptation at ICML 2023
New paper introducing the first model for closed-set and universal domain adaptation on time series accepted at ICML 2023. Raincoat addresses feature and label shifts and can detect private labels. Project website.
Apr 2023: Celebrating Achievements of Our Undergrads
Undergraduate researchers Ziyuan, Nick, Yepeng, Jiali, Julia, and Marissa are moving onto their PhD research in Computer Science, Systems Biology, Neuroscience, and Biological & Medical Sciences at Harvard, MIT, Carnegie Mellon University, and UMass Lowell. We are excited for the bright future they created for themselves.
Apr 2023: Welcoming a New Postdoctoral Fellow
An enthusiastic welcome to Tianlong Chen, our newly appointed postdoctoral fellow.
Apr 2023: New Study in Nature Machine Intelligence
New paper in Nature Machine Intelligence introducing the blueprint for multimodal learning with graphs.
Mar 2023: Precision Health in Nature Machine Intelligence
New paper with NASA in Nature Machine Intelligence on biomonitoring and precision health in deep space supported by artificial intelligence.
Mar 2023: Self-Driving Labs in Nature Machine Intelligence
New paper with NASA in Nature Machine Intelligence on biological research and self-driving labs in deep space supported by artificial intelligence.
Mar 2023: TxGNN - Zero-shot prediction of therapeutic use
New study on zero-shot prediction of therapeutic use with geometric deep learning and clinician centered design. Check out our project website and TxGNN Explorer.
Mar 2023: GraphXAI published in Scientific Data
Our approach evaluating explainability of geometric deep learning models is published in Scientific Data. Project website.
Feb 2023: Welcoming New Postdoctoral Fellows
A warm welcome to postdoctoral fellows Wanxiang Shen and Ruth Johnson. Congratulations to Ruthie for being named a Berkowitz Fellow.
Feb 2023: New Preprint on Distribution Shifts
Feb 2023: PrimeKG published in Scientific Data
Our multimodal knowledge graph for precision medicine is published in Scientific Data. Project website.
Jan 2023: GNNDelete published at ICLR 2023
New paper on machine unlearning for graph neural networks accepted at ICLR 2023. Project website.
Jan 2023: New Network Principle for Molecular Phenotypes
New paper introducing mutual interactor-based GNN for molecular phenotype prediction at PSB. Project website.
Dec 2022: Can we shorten rare disease diagnostic odyssey?
New preprint! Geometric deep learning for diagnosing patients with rare genetic diseases. Implications for using deep learning on sparsely-labeled medical datasets. Thankful for this collaboration with Zak Lab. Project website.
Nov 2022: Can AI transform the way we discover new drugs?
Our conversation with Harvard Medicine News highlights recent developments and new features in Therapeutics Data Commons.
Oct 2022: New Paper in Nature Biomedical Engineering
New paper on graph representation learning in biomedicine and healthcare published in Nature Biomedical Engineering.
Sep 2022: New Paper in Nature Chemical Biology
Our paper on artificial intelligence foundation for therapeutic science is published in Nature Chemical Biology.
Sep 2022: Self-Supervised Pre-Training at NeurIPS 2022
New paper on self-supervised contrastive pre-training accepted at NeurIPS 2022. Project page. Thankful for this collaboration with the Lincoln National Laboratory.
Sep 2022: Best Paper Honorable Mention Award at IEEE VIS
Our paper on user-centric AI of drug repurposing received the Best Paper Honorable Mention Award at IEEE VIS 2022. Thankful for this collaboration with Gehlenborg Lab.
Sep 2022: Multimodal Representation Learning with Graphs
New preprint! We present the blueprint for graph-centric multimodal learning.
Aug 2022: On Graph AI for Precision Medicine
The recording of our tutorial on using graph AI to advance precision medicine is available. Tune into four hours of interactive lectures about state-of-the-art graph AI methods and applications in precision medicine.
Aug 2022: Evaluating Explainability for GNNs
New preprint! We introduce a resource for broad evaluation of the quality and reliability of GNN explanations, addressing challenges and providing solutions for GNN explainability. Project website.
Jul 2022: New Frontiers in Graph Learning at NeurIPS
Excited to organize the New Frontiers in Graph Learning workshop at NeurIPS.
Jul 2022: AI4Science at NeurIPS
We are excited to host the AI4Science meeting at NeurIPS discussing AI-driven scientific discovery, implementation and verification of AI in science, the influence AI has on the conduct of science, and more.
Jul 2022: Graph AI for Precision Medicine at ISMB
Check out our half-day tutorial with resources on methods and applications in graph representation learning for precision medicine.
Jul 2022: Welcoming Fellows and Summer Students
Welcoming a research fellow Julia Balla and three Summer students, Nicholas Ho, Satvik Tripathi, and Isuru Herath.
Jun 2022: Broadly Generalizable Pre-Training Approach
Excited to share a preprint on self-supervised method for pre-training. Project website with evaluation on eight datasets, including electrodiagnostic testing, human daily activity recognition, and health state monitoring.
Jun 2022: Welcoming New Postdocs
Excited to welcome George Dasoulas and Huan He, new postdocs joining us this Summer.
May 2022: George Named the 2022 Wojcicki Troper Fellow
Congratulations to George Dasoulas, our incoming postdoctoral fellow, on being named the 2022 Wojcicki Troper HDSI Postdoctoral Fellow. We are delighted to welcome George in our group.
May 2022: New preprint on PrimeKG
New preprint on building knowledge graphs to enable precision medicine applications.
May 2022: Building KGs to Support Precision Medicine
Apr 2022: Webster on the Cover of Cell Systems
Webster is on the cover of April issue of Cell Systems. Webster uses cell viability changes following gene perturbation to automatically learn cellular functions and pathways from data.
Apr 2022: NASA Space Biology
Dr. Zitnik will serve on the Science Working Group at NASA Space Biology.
Mar 2022: Yasha's Graduate Research Fellowship
Yasha won the National Defense Science and Engineering Graduate (NDSEG) Fellowship. Congratulations!
Mar 2022: AI4Science at ICML 2022
We are excited to be selected to organize the AI4Science meeting at ICML 2022. Stay tuned for details. http://www.ai4science.net/icml22
Mar 2022: Graph Algorithms in Biomedicine at PSB 2023
Excited to be organizing a session on Graph Algorithms at PSB 2023. Stay tuned for details.
Mar 2022: Multimodal Learning on Graphs
New preprint! We introduce REMAP, a multimodal AI approach for disease relation extraction and classification. Project website.
Feb 2022: Explainable Graph AI on the Capitol Hill
Owen has been selected to present our research on explainable biomedical AI to members of the US Congress at the “Posters on the Hill” symposium. Congrats Owen!
Feb 2022: Graph Neural Networks for Time Series
Hot off the press at ICLR 2022. Check out Raindrop, our graph neural network with unique predictive capability to learn from irregular time series. Project website.
Feb 2022: Biomedical Graph ML Tutorial Accepted to ISMB
Excited to present a tutorial at ISMB 2022 on graph representation learning for precision medicine. Congratulations, Michelle!
Feb 2022: Marissa Won the Gates Cambridge Scholarship
Marissa Sumathipala is among the 23 outstanding US scholars selected be part of the 2022 class of Gates Cambridge Scholars at the University of Cambridge. Congratulations, Marissa!
Jan 2022: Inferring Gene Multifunctionality
Hot off the press in Cell Systems. Webster is a tool to infer gene multifunctionality from high-dimensional gene perturbation data by applying sparse representation learning to large CRISPR-Cas9 fitness screens. Explore Webster’s web portal.
Jan 2022: Deep Graph AI for Time Series Accepted to ICLR
Paper on graph representation learning for time series accepted to ICLR. Congratulations, Xiang!
Jan 2022: Probing GNN Explainers Accepted to AISTATS
Paper on probing GNN explainers through rigorous theoretical and empirical analysis of GNN explanation methods accepted to AISTATS. Congratulations, Chirag!
Jan 2022: Marissa Sumathipala selected as Churchill Scholar
Marissa Sumathipala is selected for the prestigious Churchill Scholarship. Congratulations, Marissa!
Jan 2022: Therapeutics Data Commons User Meetup
We invite you to join the growing open-science community at the User Group Meetup of Therapeutics Data Commons! Register for the first live user group meeting on Tuesday, January 25 at 11:00 AM EST.
Jan 2022: Workshop on Graph Learning Benchmarks
Submit your papers to our Workshop on Graph Learning Benchmarks organized at The Web Conference (WWW). Call for papers!
Dec 2021: NASA: Precision Space Health System
Human space exploration beyond low Earth orbit will involve missions of significant distance and duration. To effectively mitigate myriad space health hazards, paradigm shifts in data and space health systems are necessary to enable Earth independence. Delighted to be working with NASA and can share our recommendations!
Dec 2021: Beyond Low Earth Orbit: Biological Research & AI
As space exploration is extended beyond low Earth orbit, experiments must be maximally autonomous and intelligent to guide biological research. Excited to be working with NASA and can share our recommendations!