‘*’ Those authors contributed equally.
‘*’ Those authors contributed equally.
Latest News
Jul 2025: Launching TxAgent Evaluation Portal
Launched TxAgent evaluation portal, our global evaluation of AI for drug decision-making and therapeutic reasoning. Participate in TxAgent evaluations! [TxAgent project]
Jul 2025: SPATIA Model of Spatial Cell Phenotypes
Jul 2025: AI-Enabled Drug Discovery Reaches Clinical Milestone
New piece in Nature Medicine on AI-enabled drug discovery reaching a clinical milestone.
Jun 2025: Knowledge Tracing for Biomedical AI Education
New preprint on biologically inspired architecture for knowledge tracing. The study on the use of generative AI in education with prospective evaluation of knowledge tracing in the classroom.
Jun 2025: Few shot learning for rare disease diagnosis
New paper in npj Digital Medicine: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases.
Jun 2025: One Patient, Many Contexts: Scaling Medical AI
Jun 2025: ToolUniverse - 211+ Tools for "AI Scientist" Agents
ToolUniverse now offers access to over 211 cutting-edge biological and medical tools, all integrated with Model Context Protocol (MCP). Any “AI Scientist” agent can tap into these tools for biomedical research. [Tutorial] [ToolUniverse] [TxAgent]
May 2025: What Perturbation Can Reverse Disease Effects?
In press at Nature Biomedical Engineering: PDGrapher AI predicts chemicals to reverse disease phenotypic effects — with applications to drug target identification.
May 2025: Decision Transformers for Cell Reprogramming
New preprint: Decision transformers for generating reach-avoid policies in sequential decision making — with applications from robotics to cell reprogramming.
May 2025: COMPASS: Immunotherapy Outcome Prediction
Apr 2025: ATOMICA - A Universal Model of Molecular Interactions
Mar 2025: On Biomedical AI in Harvard Gazette
Read about AI in medicine in the latest Harvard Gazette and New York Times.
Mar 2025: TxAgent: AI Agent for Therapeutic Reasoning
TxAgent is an AI agent for therapeutic reasoning that consolidates 211 tools from trusted sources, including all US FDA-approved drugs since 1939 and validated clinical insights. [Project website] [TxAgent] [ToolUniverse]
Mar 2025: Multimodal AI predicts clinical outcomes of drug combinations from preclinical data
Mar 2025: KGARevion: AI Agent for Knowledge-Intensive Biomedical QA
KGARevion is an AI agent designed for complex biomedical QA that integrates the non-codified knowledge of LLMs with the structured, codified knowledge found in knowledge graphs. [ICLR 2025 publication]
Feb 2025: MedTok: Unlocking Medical Codes for GenAI
Meet MedTok, a multimodal medical code tokenizer that transforms how AI understands structured medical data. By integrating textual descriptions and relational contexts, MedTok enhances tokenization for transformer-based models—powering everything from EHR foundation models to medical QA. [Project website]
Feb 2025: What If You Could Rewrite Biology? Meet CLEF
What if we could anticipate molecular and medical changes before they happen? Introducing CLEF, an approach for counterfactual generation in biological and medical sequence models. [Project website]
Feb 2025: Digital Twins as Global Health and Disease Models
New paper on the role of digital twins as global health and disease learning models for preventive and personalized medicine.
Jan 2025: LLM and KG+LLM agent papers at ICLR
New papers on test-time interventions in language models and knowledge graph based LLM agents accepted to ICLR. [KGARevion]
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