tooluniverse.tools.humanbase_ppi_analysis module

humanbase_ppi_analysis

Retrieve tissue-specific protein-protein interactions and biological processes from HumanBase. Re…

tooluniverse.tools.humanbase_ppi_analysis.humanbase_ppi_analysis(gene_list, tissue, max_node, interaction, string_mode, *, stream_callback=None, use_cache=False, validate=True)[source]

Retrieve tissue-specific protein-protein interactions and biological processes from HumanBase. Re…

Parameters:

  • gene_list (list[Any]) – List of gene names or symbols to analyze for protein-protein interactions. Th…

  • tissue (str) – Tissue type for tissue-specific interactions. Examples: ‘brain’, ‘heart’, ‘li…

  • max_node (int) – Maximum number of nodes to retrieve in the interaction network. Warning: the …

  • interaction (str) – Specific interaction type to filter by. Available types: ‘co-expression’, ‘in…

  • string_mode (bool) – Whether to return the result in string mode. If True, the result will be a st…

  • stream_callback (Callable, optional) – Callback for streaming output

  • use_cache (bool, default False) – Enable caching

  • validate (bool, default True) – Validate parameters

Return type:

Any