Source code for tooluniverse.tools.gnomAD_query_variant

"""
gnomAD_query_variant

Query gnomAD GraphQL for a variant in a dataset (returns ID and genome allele counts/frequency).
"""

from typing import Any, Optional, Callable
from ._shared_client import get_shared_client


[docs] def gnomAD_query_variant( variant_id: str, dataset: Optional[str] = "gnomad_r4", *, stream_callback: Optional[Callable[[str], None]] = None, use_cache: bool = False, validate: bool = True, ) -> dict[str, Any]: """ Query gnomAD GraphQL for a variant in a dataset (returns ID and genome allele counts/frequency). Parameters ---------- variant_id : str Variant ID like '1-230710048-A-G'. dataset : str Dataset ID (e.g., gnomad_r4). stream_callback : Callable, optional Callback for streaming output use_cache : bool, default False Enable caching validate : bool, default True Validate parameters Returns ------- dict[str, Any] """ # Handle mutable defaults to avoid B006 linting error return get_shared_client().run_one_function( { "name": "gnomAD_query_variant", "arguments": {"variant_id": variant_id, "dataset": dataset}, }, stream_callback=stream_callback, use_cache=use_cache, validate=validate, )
__all__ = ["gnomAD_query_variant"]