‘*’ Those authors contributed equally.
‘*’ Those authors contributed equally.
Latest News
Sep 2025: ToolUniverse: AI Agents for Science and Medicine
New paper: ToolUniverse introduces an open ecosystem for building AI scientists with 600+ scientific and biomedical tools. Build your AI co-scientists at https://aiscientist.tools.
Sep 2025: Democratizing "AI Scientists" with ToolUniverse
Our new initiative: Use Tool Universe to build an AI scientist for yourself from any language or reasoning model, whether open or closed. https://aiscientist.tools
Sep 2025: InfEHR in Nature Communications
Collaboration with Ben and Girish on clinical phenotype resolution through deep geometric learning on electronic health records published in Nature Communications.
Sep 2025: PDGrapher in Nature Biomedical Engineering
New paper in Nature Biomedical Engineering introducing PDGrapher, a model for phenotype-based target discovery. [Harvard Medicine News]
Sep 2025: AI and Net Medicine: Path to Precision Medicine
New perspective published in NEJM AI on advancing AI and network medicine on a path to precision medicine.
Aug 2025: CUREBench - Reasoning for Therapeutics
Update from CUREBench: 650+ entrants, 100+ teams and 500+ submissions. Thank you to the CUREBench community. Working on AI for drug discovery and reasoning in medicine? New teams welcome. Tasks, rules, and leaderboard: https://curebench.ai.
Aug 2025: Drug Discovery Workshop at NeurIPS 2025
Excited to organize a NeurIPS workshop on Virtual Cells and Digital Instruments. Submit your papers.
Aug 2025: AI for Science Workshop at NeurIPS
Excited to organize a NeurIPS workshop on AI for Science. This is our 6th workshop in the AI for Science series. Submit your papers.
Jul 2025: Launching CUREBench
Launched CUREBench, the first competition in AI reasoning for therapeutics. Colocated with NeurIPS 2025. Start at https://curebench.ai.
Jul 2025: Launching TxAgent Evaluation Portal
Launched TxAgent evaluation portal, our global evaluation of AI for drug decision-making and therapeutic reasoning. Participate in TxAgent evaluations! [TxAgent project]
Jul 2025: SPATIA Model of Spatial Cell Phenotypes
Jul 2025: AI-Enabled Drug Discovery Reaches Clinical Milestone
New piece in Nature Medicine on AI-enabled drug discovery reaching a clinical milestone.
Jun 2025: Knowledge Tracing for Biomedical AI Education
New preprint on biologically inspired architecture for knowledge tracing. The study on the use of generative AI in education with prospective evaluation of knowledge tracing in the classroom.
Jun 2025: Few shot learning for rare disease diagnosis
New paper in npj Digital Medicine: Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases.
Jun 2025: One Patient, Many Contexts: Scaling Medical AI
Jun 2025: ToolUniverse - 211+ Tools for "AI Scientist" Agents
ToolUniverse now offers access to over 211 cutting-edge biological and medical tools, all integrated with Model Context Protocol (MCP). Any “AI Scientist” agent can tap into these tools for biomedical research. [Tutorial] [ToolUniverse] [TxAgent]
May 2025: What Perturbation Can Reverse Disease Effects?
In press at Nature Biomedical Engineering: PDGrapher AI predicts chemicals to reverse disease phenotypic effects — with applications to drug target identification.
May 2025: Decision Transformers for Cell Reprogramming
New preprint: Decision transformers for generating reach-avoid policies in sequential decision making — with applications from robotics to cell reprogramming.
May 2025: COMPASS: Immunotherapy Outcome Prediction
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