Uniprot Tools¶
Configuration File: uniprot_tools.json
Tool Type: Local
Tools Count: 10
This page contains all tools defined in the uniprot_tools.json configuration file.
Available Tools¶
UniProt_get_alternative_names_by_accession (Type: UniProtRESTTool)¶
Extract all alternative names (alternativeNames) from UniProtKB entry.
UniProt_get_alternative_names_by_accession tool specification
Tool Information:
Name:
UniProt_get_alternative_names_by_accessionType:
UniProtRESTToolDescription: Extract all alternative names (alternativeNames) from UniProtKB entry.
Parameters:
accession(string) (required) UniProtKB accession, e.g., P05067.
Example Usage:
query = {
"name": "UniProt_get_alternative_names_by_accession",
"arguments": {
"accession": "example_value"
}
}
result = tu.run(query)
UniProt_get_disease_variants_by_accession (Type: UniProtRESTTool)¶
Extract all variants (feature type = VARIANT) and their related annotations from UniProtKB entry.
UniProt_get_disease_variants_by_accession tool specification
Tool Information:
Name:
UniProt_get_disease_variants_by_accessionType:
UniProtRESTToolDescription: Extract all variants (feature type = VARIANT) and their related annotations from UniProtKB entry.
Parameters:
accession(string) (required) UniProtKB accession, e.g., P05067.
Example Usage:
query = {
"name": "UniProt_get_disease_variants_by_accession",
"arguments": {
"accession": "example_value"
}
}
result = tu.run(query)
UniProt_get_entry_by_accession (Type: UniProtRESTTool)¶
Get the complete JSON entry for a specified UniProtKB accession.
UniProt_get_entry_by_accession tool specification
Tool Information:
Name:
UniProt_get_entry_by_accessionType:
UniProtRESTToolDescription: Get the complete JSON entry for a specified UniProtKB accession.
Parameters:
accession(string) (required) UniProtKB entry accession, e.g., P05067.
Example Usage:
query = {
"name": "UniProt_get_entry_by_accession",
"arguments": {
"accession": "example_value"
}
}
result = tu.run(query)
UniProt_get_function_by_accession (Type: UniProtRESTTool)¶
Extract functional annotations from UniProtKB entry (Comment type = FUNCTION).
UniProt_get_function_by_accession tool specification
Tool Information:
Name:
UniProt_get_function_by_accessionType:
UniProtRESTToolDescription: Extract functional annotations from UniProtKB entry (Comment type = FUNCTION).
Parameters:
accession(string) (required) UniProtKB accession, e.g., P05067.
Example Usage:
query = {
"name": "UniProt_get_function_by_accession",
"arguments": {
"accession": "example_value"
}
}
result = tu.run(query)
UniProt_get_isoform_ids_by_accession (Type: UniProtRESTTool)¶
Extract all splice isoform IDs from UniProtKB entry (isoformNames).
UniProt_get_isoform_ids_by_accession tool specification
Tool Information:
Name:
UniProt_get_isoform_ids_by_accessionType:
UniProtRESTToolDescription: Extract all splice isoform IDs from UniProtKB entry (isoformNames).
Parameters:
accession(string) (required) UniProtKB accession, e.g., P05067.
Example Usage:
query = {
"name": "UniProt_get_isoform_ids_by_accession",
"arguments": {
"accession": "example_value"
}
}
result = tu.run(query)
UniProt_get_organism_by_accession (Type: UniProtRESTTool)¶
Extract the organism scientific name from UniProtKB entry.
UniProt_get_organism_by_accession tool specification
Tool Information:
Name:
UniProt_get_organism_by_accessionType:
UniProtRESTToolDescription: Extract the organism scientific name from UniProtKB entry.
Parameters:
accession(string) (required) UniProtKB accession, e.g., P05067.
Example Usage:
query = {
"name": "UniProt_get_organism_by_accession",
"arguments": {
"accession": "example_value"
}
}
result = tu.run(query)
UniProt_get_ptm_processing_by_accession (Type: UniProtRESTTool)¶
Extract all PTM and processing sites from UniProtKB entry (feature type = MODIFIED RESIDUE or SIG…
UniProt_get_ptm_processing_by_accession tool specification
Tool Information:
Name:
UniProt_get_ptm_processing_by_accessionType:
UniProtRESTToolDescription: Extract all PTM and processing sites from UniProtKB entry (feature type = MODIFIED RESIDUE or SIGNAL, etc.).
Parameters:
accession(string) (required) UniProtKB accession, e.g., P05067.
Example Usage:
query = {
"name": "UniProt_get_ptm_processing_by_accession",
"arguments": {
"accession": "example_value"
}
}
result = tu.run(query)
UniProt_get_recommended_name_by_accession (Type: UniProtRESTTool)¶
Extract the recommended protein name (recommendedName) from UniProtKB entry.
UniProt_get_recommended_name_by_accession tool specification
Tool Information:
Name:
UniProt_get_recommended_name_by_accessionType:
UniProtRESTToolDescription: Extract the recommended protein name (recommendedName) from UniProtKB entry.
Parameters:
accession(string) (required) UniProtKB accession, e.g., P05067.
Example Usage:
query = {
"name": "UniProt_get_recommended_name_by_accession",
"arguments": {
"accession": "example_value"
}
}
result = tu.run(query)
UniProt_get_sequence_by_accession (Type: UniProtRESTTool)¶
Extract the canonical sequence from UniProtKB entry.
UniProt_get_sequence_by_accession tool specification
Tool Information:
Name:
UniProt_get_sequence_by_accessionType:
UniProtRESTToolDescription: Extract the canonical sequence from UniProtKB entry.
Parameters:
accession(string) (required) UniProtKB accession, e.g., P05067.
Example Usage:
query = {
"name": "UniProt_get_sequence_by_accession",
"arguments": {
"accession": "example_value"
}
}
result = tu.run(query)
UniProt_get_subcellular_location_by_accession (Type: UniProtRESTTool)¶
Extract subcellular localization annotations from UniProtKB entry (Comment type = SUBCELLULAR LOC…
UniProt_get_subcellular_location_by_accession tool specification
Tool Information:
Name:
UniProt_get_subcellular_location_by_accessionType:
UniProtRESTToolDescription: Extract subcellular localization annotations from UniProtKB entry (Comment type = SUBCELLULAR LOCATION).
Parameters:
accession(string) (required) UniProtKB accession, e.g., P05067.
Example Usage:
query = {
"name": "UniProt_get_subcellular_location_by_accession",
"arguments": {
"accession": "example_value"
}
}
result = tu.run(query)