Monarch Tools

Configuration File: monarch_tools.json Tool Type: Local Tools Count: 3

This page contains all tools defined in the monarch_tools.json configuration file.

Available Tools

get_HPO_ID_by_phenotype (Type: Monarch)

Retrieve the HPO ID of a phenotype or symptom.

get_HPO_ID_by_phenotype tool specification

Tool Information:

  • Name: get_HPO_ID_by_phenotype

  • Type: Monarch

  • Description: Retrieve the HPO ID of a phenotype or symptom.

Parameters:

  • query (string) (optional) One query phenotype or symptom.

  • limit (integer) (optional) Number of entries to fetch.

  • offset (integer) (optional) Number of initial entries to skip.

Example Usage:

query = {
    "name": "get_HPO_ID_by_phenotype",
    "arguments": {
    }
}
result = tu.run(query)

get_joint_associated_diseases_by_HPO_ID_list (Type: MonarchDiseasesForMultiplePheno)

Retrieve diseases associated with a list of phenotypes or symptoms by a list of HPO IDs.

get_joint_associated_diseases_by_HPO_ID_list tool specification

Tool Information:

  • Name: get_joint_associated_diseases_by_HPO_ID_list

  • Type: MonarchDiseasesForMultiplePheno

  • Description: Retrieve diseases associated with a list of phenotypes or symptoms by a list of HPO IDs.

Parameters:

  • HPO_ID_list (array) (optional) List of phenotypes or symptoms

  • limit (integer) (optional) Number of entries to fetch.

  • offset (integer) (optional) Number of initial entries to skip.

Example Usage:

query = {
    "name": "get_joint_associated_diseases_by_HPO_ID_list",
    "arguments": {
    }
}
result = tu.run(query)

get_phenotype_by_HPO_ID (Type: Monarch)

Retrieve a phenotype or symptom by its HPO ID.

get_phenotype_by_HPO_ID tool specification

Tool Information:

  • Name: get_phenotype_by_HPO_ID

  • Type: Monarch

  • Description: Retrieve a phenotype or symptom by its HPO ID.

Parameters:

  • id (string) (optional) The HPO ID of the phenotype or symptom.

Example Usage:

query = {
    "name": "get_phenotype_by_HPO_ID",
    "arguments": {
    }
}
result = tu.run(query)