tooluniverse.clinvar_tool module

ClinVar REST API Tool

This tool provides access to the ClinVar database for clinical variant information, disease associations, and clinical significance data.

class tooluniverse.clinvar_tool.ClinVarRESTTool[source]

Bases: BaseTool

Base class for ClinVar REST API tools.

__init__(tool_config)[source]
run(arguments)[source]

Execute the tool with given arguments.

class tooluniverse.clinvar_tool.ClinVarSearchVariants[source]

Bases: ClinVarRESTTool

Search for variants in ClinVar by gene or condition.

__init__(tool_config)[source]
run(arguments)[source]

Search variants by gene or condition.

class tooluniverse.clinvar_tool.ClinVarGetVariantDetails[source]

Bases: ClinVarRESTTool

Get detailed variant information by ClinVar ID.

__init__(tool_config)[source]
run(arguments)[source]

Get variant details by ClinVar ID.

class tooluniverse.clinvar_tool.ClinVarGetClinicalSignificance[source]

Bases: ClinVarRESTTool

Get clinical significance information for variants.

__init__(tool_config)[source]
run(arguments)[source]

Get clinical significance by variant ID.